BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493891
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 841 0.0
> AT5G40860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27210.1);
Has 69 Blast hits to 69 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:16370368-16371985
FORWARD LENGTH=843
Length=843
Score = 841 bits (455), Expect = 0.0
Identities = 544/586 (93%), Gaps = 9/586 (2%)
Strand=Plus/Plus
Query 128 GGAGAATTTAGCTCCGGCGGCTACTCCGATGACGGTGGCTAATGGTTTAAGTGCTCAAGC 187
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 261 GGAGAATTTAGCTCCGGTGGCTACTCCGAAGACGGTGGATAATGGTTTAAGTGCTCAAGT 320
Query 188 GAAATCTCGATGGTCGTTTTCTTCTTCTAAGAGAAGCTTTGGAAGTAGTAAAGATGAAAC 247
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GAAATCTCGGTGGTCGTTTTCTTCTTCTAAGAGAAGCTTTGGAAGTAGTAAAGATGAAAC 380
Query 248 CTTTTTTGATTCACAACAATGGCTACAATCTGATTCTGAAGACGATTTCTACAGCGTTCA 307
|| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 381 CTATTTTGATTCACATCAATGGCAACAATCTGATTCTGAAGACGATTTCTATAGCGTTCG 440
Query 308 TGGCGATTTCACTCCATCACTTGGAAACACTCCGAAG-TGTAGTTTCTCAGAGAAGCTTC 366
||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||
Sbjct 441 TGGCGATTTCACTCCATCAGTTGGAAACACTCC-AAGGTGTAGTATCTCAGAGAAGCTTC 499
Query 367 CTCGTTTTCACAACCCTTTATTCGAAGGAGAGAAGCCTCGAGTATCGTTCTCGCATTCTC 426
||||| |||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 500 CTCGTATTCACAGCCCTTTATTTGAAGGAGAGAAACCTCGAGTATCGTTTTCGCATTCTC 559
Query 427 CTGCACCGCGGAGGAAGAAACTAGGCGAACTATTTGGAGATAGTATAAGAGAAGAACGAG 486
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 560 CTGCACCGCGGAGAAAGAAACTAGGCGAACTATTTAGAGATAGTATAAGAGAAGAACGAG 619
Query 487 -AGGAAAATTTGGAAGAGTCAACAGAAAACCAAAGTGAAAAGAGTAAAAAATCATCAGGT 545
|| || ||| ||||||||| | ||| ||||||||||||| ||||||||||||||| ||
Sbjct 620 CAGTAAT-TTTAGAAGAGTCATCGGAATACCAAAGTGAAAAAAGTAAAAAATCATCATGT 678
Query 546 GATAACTTTGG-TGAGCTCAAAGTCATTGAAGATTCTGTAGAAGAGAAGAAGAATCTTAA 604
||||| || || ||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 679 GATAA-TTCGGGTGAGCTCAAAGTCATTGAAGAATCTGTAAAAGAGAAGAAGAATCTTAA 737
Query 605 ATCT--T-TGAACTATCACCATCGTTGTCTTCCGAGATTCTCGTCTTTTAAAGGAAGTTT 661
|||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 ATCTCCTCTGAATTATCACCATCGTTGTCTTCCGAGATTCTCGTCTTTTAAAGGAAGTTT 797
Query 662 AATGGagaagagaaggaagaagaagaagaaAATTCATGTGAAATGA 707
|||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 798 AATGGACAAGAGAAAGAAGAAGAAGAAGAAAATTCATGTGAAATGA 843
Score = 128 bits (69), Expect = 7e-29
Identities = 93/104 (89%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 16 aaaaGCTCGTGA-AACTGCCCACTATGATAAGCAATGACTCATTGCCGGTGAATAATTCG 74
|||||||||||| | | |||||||||||||||| | ||||| || ||| |||||||||||
Sbjct 80 AAAAGCTCGTGAGATC-GCCCACTATGATAAGCCACGACTCGTTTCCGATGAATAATTCG 138
Query 75 CCGGTGACGGCGGAGGAGAATGTTGGTGTTACGGAAAAA-CCAt 117
|||||||||||||||||||| | |||||||||||||||| ||||
Sbjct 139 CCGGTGACGGCGGAGGAGAACGGTGGTGTTACGGAAAAATCCAT 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5