BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493892
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40855.1 | Symbols: | unknown protein; Has 30201 Blast hits... 202 1e-51
AT5G05010.1 | Symbols: | clathrin adaptor complexes medium sub... 178 2e-44
> AT5G40855.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16369114-16369350
REVERSE LENGTH=237
Length=237
Score = 202 bits (109), Expect = 1e-51
Identities = 136/149 (91%), Gaps = 1/149 (1%)
Strand=Plus/Plus
Query 23 TCCATTTCACAATACTGCTTCACCTCAACAAGTGTCACACTTTTATTGTGCCCAAGAGAT 82
||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 89 TCCATTTCACAATACTGCTTCACCTGGACACTTGTCACACTTTCCTTGTGCCCAAGAGAT 148
Query 83 ATGACTTCATCAAATGCAAATATCAACTCAAAAGCAGCCCTGCCAAA-TCCCTTGTTCAT 141
||||| || |||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 149 ATGACCTCGTCAAATGCAAATATCAGCTCAAAAGTAGCCCTGCCAAAATCCCTTGTTCAT 208
Query 142 CTAAAGACATGGAAGACTCATGCACCTAG 170
|||||||||||||||||||||| || |||
Sbjct 209 CTAAAGACATGGAAGACTCATGTACATAG 237
> AT5G05010.1 | Symbols: | clathrin adaptor complexes medium subunit
family protein | chr5:1476583-1480197 FORWARD LENGTH=2059
Length=2059
Score = 178 bits (96), Expect = 2e-44
Identities = 126/140 (90%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 23 TCCATTTCACAATACTGCTTCACCTCAACAAGTGTCACACTTTTATTGTGCCCAAGAGAT 82
||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 560 TCCATTTCACAATACTGCTTCACCTGGGCAACTGTCACACTTTCCTTGTGCCCAAGAGAT 501
Query 83 ATGACTTCATCAAATGCAAATATCAACTCAAAAGCA-GCCCTGCCAAATCCCTTGTTCAT 141
||||||||||||||||||||||| | |||||||| | |||||| ||||||||| |||||
Sbjct 500 ATGACTTCATCAAATGCAAATATGAGCTCAAAAG-ATGCCCTGG-AAATCCCTTCTTCAT 443
Query 142 CTAAAGACATGGAAGACTCA 161
|||||||||||||| |||||
Sbjct 442 CTAAAGACATGGAATACTCA 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8651832372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5