BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493893
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40850.1 | Symbols: UPM1 | urophorphyrin methylase 1 | chr5:... 2390 0.0
AT3G30415.1 | Symbols: | pseudogene, putative urophorphyrin II... 488 7e-137
AT3G30405.1 | Symbols: | transposable element gene | chr3:1201... 318 1e-85
> AT5G40850.1 | Symbols: UPM1 | urophorphyrin methylase 1 | chr5:16366470-16369099
FORWARD LENGTH=1789
Length=1789
Score = 2390 bits (1294), Expect = 0.0
Identities = 1545/1661 (93%), Gaps = 38/1661 (2%)
Strand=Plus/Plus
Query 1 AGCAAAAATCCTACAAATT-AAAA-TGTCTCTAACATGTGCATATTTGCAAAAGCACACA 58
||||||||| ||||||||| |||| |||||| |||||||||||| || | | ||||||
Sbjct 2 AGCAAAAATGCTACAAATTAAAAAGTGTCTCCAACATGTGCATA-TT-C---A-CACACA 55
Query 59 AGTTGGTGTCAACGCTCCACTTTTGTGC-AGACAGGCGTGTGTTCATTGTTGAATCTTCC 117
|||||||||||||||| || | | ||| |||||||||||||||||||||||||||
Sbjct 56 AGTTGGTGTCAACGCT-CA-----G-ACAAGAAAGGCGTGTGTTCATTGTTGAATCTTCC 108
Query 118 CATTTCCTCATCCAAATTCCGACATAACTCCTCTTGGCCGCCATTTGTTCTCCATATTAC 177
||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||
Sbjct 109 CATTTCCTCATCCAAATTCCGACATAACT-ATCCTAGCCGCCATTTGTTCTCCACATTAC 167
Query 178 AAAACCCTCAGCAGCTTCAAAACTCTTCCGATCTCT-CTTCGACGC-CGCAATTCTCTCA 235
|||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||
Sbjct 168 AAAACCCTCAGCAGCTTCAAAACTCTTCCGATCTCTCCCTC-ACGCTCGCAATTCTCTCG 226
Query 236 TCTCCATTTTTATAG--TTTCTGCTCGGAACCACAAATCTCCGGCTTCTTGTTCCGTGGT 293
|||||||||| |||| ||||| ||||||| ||||||||| |||||||||||||| | |
Sbjct 227 TCTCCATTTTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCC-T--T 283
Query 294 GAGTGTGTGTGTTGTTGGTTATTGAATGGCTCTTGTCCAGAGGATTCCCATTTCCTCCTC 353
| | ||||||| || | ||| ||||||||||||||| ||| ||||||| |||||||||||
Sbjct 284 G-GCGTGTGTG-TG-T-GTTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCTCCTC 339
Query 354 TAGTGTTCGGAATTGGCAACAAGCTAGGACCAATTCCACTCCTATTTGCTGTTTACATTA 413
||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 340 CAGTATTCGGAATTGGCAACAAGCGAGGACCAATTTGACTCCTATTTGTTGTTTACATTA 399
Query 414 CAATACTGCA---TCTTCTTCTTCACCCTTTACAGAGAAGCACTCTGTCGAGAGATACCA 470
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 400 CAATACTGCATCTTCTTCTTCTTCACCCTTTACAGAGAAGCACTCTGTGGAGAGATACCA 459
Query 471 GAGGGATCAATGGCTCTACAAGGCAGTTGAACCCACACCACCATCGACTCCATCTCCATC 530
|||||||||||||| ||||| || |||||||| || |||||||||||||||||||||||
Sbjct 460 AAGGGATCAATGGCTGTACAAAGCGGTTGAACCAACGCCACCATCGACTCCATCTCCATC 519
Query 531 GCCATTCAAAGATGAAGTCTTTGTTAGGGAAAACGACATTGCATCGCAGCTGCCTGAGCT 590
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GCCATTTGAAGATGAAGTCTTTGTTAGGGAAAACGACATTGCATCGCAGCTGCCTGAGCT 579
Query 591 GAAGAAGCTCTTGGCTGTGCTGAGAGAGAAGAGAGTTAAAGGCTGCAAAGGTGGTGATTG 650
||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 580 GAAGAAGCTTTTGGCAGTGCTGAAAGAGAAGAGAGTTAAAGGATGCAAAGGTGGTGATTG 639
Query 651 TGGACCGGGGGATGTGTATCTGGTTGGGACAGGACCAGGAGATCCTGAGCTTTTGACTCT 710
|||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 640 TGGACCAGGAGATGTGTATCTTGTTGGGACAGGGCCAGGAGATCCTGAGCTTTTGACTCT 699
Query 711 TAAAGCTGTCAGAGTTATTCAAAGTGCCGATCTTTTGCTTTACGACAGGCTTGTTTCCAA 770
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 700 TAAAGCTGTCAGAGTTATTCAAAGTGCCGATCTTTTGCTTTACGACAGGCTTGTCTCCAA 759
Query 771 TGATGTCTTGGAGTTGGTTGCTCCTGATGCTAGACTTCTTTATGTCGGCAAAACTGCTGG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TGATGTCTTGGAGTTGGTTGCTCCTGATGCTAGACTTCTTTATGTCGGCAAAACTGCTGG 819
Query 831 TTATCATAGCAGAACTCAGGTAGAGATTCATGAACTACTCCTAAGTTTTGCGGAAGCTGG 890
|||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 820 TTATCATAGCAGAACTCAGGAAGAGATTCATGAACTACTCCTAAATTTTGCTGAAGCTGG 879
Query 891 TGCCACTGTTGTCAGGCTTAAAGGTGGAGATCCTCTGGTCTTTGGACGGGGCGGGGAAGA 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 880 TGCCACTGTTGTCAGGCTTAAAGGTGGAGATCCTCTGGTCTTTGGACGGGGCGGCGAAGA 939
Query 951 AATGGACTTTCTACAACAACAAGGGATTCGAGTTCAAGTTATCCCAGGGATTACTGCGGC 1010
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 940 AATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGGGATAACTGCGGC 999
Query 1011 ATCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGCGGTGTTGCAACTAGTGT 1070
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1000 GTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGAGGTGTTGCAACTAGTGT 1059
Query 1071 AAGGTTTCTCACTGGTCATTCAAGGAAAGGAGGGACCGACCCTCTGTTTGTTGCAGAGAA 1130
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1060 AAGGTTTCTCACTGGTCATTCAAGGAAAGGAGGGACAGACCCTCTGTTTGTTGCAGAGAA 1119
Query 1131 TGCAGCTGATCCGGACACAACACTCGTTGTTTATATGGGTTTGGGAACCTTACCTTCTCT 1190
||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1120 TGCAGCTGACCCGGATACAACACTTGTCGTTTATATGGGTTTGGGAACTTTACCTTCTCT 1179
Query 1191 TGCACAAAAACTAATGGACCATGGTCTCCCTTGTGATACACCAGCTGTTGCGGTCGAACG 1250
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1180 TGCACAAAAACTAATGGACCATGGTCTCCCTTCTGATACACCAGCTGTTGCGGTTGAACG 1239
Query 1251 TGGAACCACTCCTCTACAGCGTACAGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGAT 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 TGGAACCACTCCTCTACAGCGTACAGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGAT 1299
Query 1311 TCAGTCAGCTGGATTGGTGTCACCAACGCTCATCATCATAGGGAAAGTCGTCGAGCTCTC 1370
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1300 TCAGTCAGCTGGATTGGTGTCACCAACACTCATCATCATAGGGAAAGTCGTTGAGCTCTC 1359
Query 1371 GCCTTTATGGCCACATTGCACGAAAGAATCCTCCTGCCTTGTAGAGACCCGGTAGATATT 1430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 ACCTTTATGGCCACATTGCACGAAAGAATCCTCCTGCCTTGTAGAGACCCGGTAGATATT 1419
Query 1431 TCACTCTTATTTTACGGGTCA-GTGGCTTCCATCGACATTACGGTGAAGTTTTAGGAGCT 1489
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TCACTCTTATTTTACGGG-CGTGTGGCTTCCATCGACATTACGGTGAAGTTTTAGGAGCT 1478
Query 1490 ATGGAGCTATGAAGGTTGAGACTTGAGAGATGTAATACACAAAAAGGAAAGCTTATATTT 1549
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 1479 ATGGAGCTATGAAGGTTGAGACTTGAGAGATGTAATAAACAAAAAGGAAAGCTGATAGTT 1538
Query 1550 TCTTATCATGTCCCTGTCCTTCAATTCTTTTTGGACAATGCCAATGGCATTGTTAATGTA 1609
|||||| | || ||||||||||| |||| |||||||| ||||||| ||||||||||
Sbjct 1539 TCTTATGACGT----GTCCTTCAATTGTTTTGGGACAATGGTAATGGCAATGTTAATGTA 1594
Query 1610 ATAAACAAGTTTCAATCTGTGCCATTGTGACTAAATTTTCC 1650
||||||||||||||||| |||||| ||||||||| ||||||
Sbjct 1595 ATAAACAAGTTTCAATCAGTGCCACTGTGACTAATTTTTCC 1635
> AT3G30415.1 | Symbols: | pseudogene, putative urophorphyrin
III methylase, blastp match of 80% identity and 2.7e-49 P-value
to GP|20161485|dbj|BAB90408.1||AP003681 uroporphyrin-III
C-methyltransferase-like protein {Oryza sativa (japonica cultivar-group)}
| chr3:12039061-12041042 FORWARD LENGTH=1982
Length=1982
Score = 488 bits (264), Expect = 7e-137
Identities = 344/380 (91%), Gaps = 15/380 (4%)
Strand=Plus/Plus
Query 1272 TACA-GTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTGGTGT 1330
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TACAGGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTGGTGT 1667
Query 1331 CACCAACGCTCATCATCATAGGGAAAGTCGTCGAGCTCTCGCCTTTATGGCCACATTGCA 1390
||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1668 CACCAACACCCATTATCATAGGGAAAGTCGTCGAGCTCTCGCCTTTATGGCCACATTGTA 1727
Query 1391 CGAAAGAATCCTCCTGCCTTGTAGAGACCCGGTAGATATTTCACTCTTATTTTACGGGTC 1450
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1728 TGAAAGAATCCTCCTGCCTTGTAGAGACCCAATAGATATTTCACTCTTATTTTACGGG-C 1786
Query 1451 -AGTGGCTTCCATCGACATTACGGTGAAGTTTTAGGAGCTATGGAGCTATGAAGGTTGAG 1509
| |||||||||||||||| |||||||| ||||||||| ||||||||||| || | | |
Sbjct 1787 GACTGGCTTCCATCGACATGACGGTGAACTTTTAGGAGGTATGGAGCTAT-AA--T-G-G 1841
Query 1510 ACTTGAGAGATGTAAT-ACACAAAAAGGAAAGCTTATATTTTCTTATCATGTCCC-TGTC 1567
|||||||||||||| | ||||||| ||||||| ||||||| || | ||||||| ||||
Sbjct 1842 --TTGAGAGATGTAATTA-ACAAAAAAGAAAGCTGATATTTTTTT-T-ATGTCCCGTGTC 1896
Query 1568 CTTCAATTCTTTTTGGACAATGCCAATGGCATTGTTAATGTAATAAACAAGTTTCAATCT 1627
|||||||| |||| |||||||| |||||||| |||||||||||||||||||||||| ||
Sbjct 1897 CTTCAATTGTTTTGGGACAATGGCAATGGCAATGTTAATGTAATAAACAAGTTTCAGTCA 1956
Query 1628 GTGCCATTGTGACTAAATTT 1647
||||||||| ||||||||||
Sbjct 1957 GTGCCATTGCGACTAAATTT 1976
Score = 372 bits (201), Expect = 7e-102
Identities = 249/273 (91%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 995 CAGGGATTACTGCGGCATCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGCG 1054
|||| || |||||||| ||| |||||||||| |||||||||||||||||||||||||| |
Sbjct 1232 CAGGAATAACTGCGGCGTCGAGGATAGCAGCGGAGTTGGGGATTCCACTAACACATCGAG 1291
Query 1055 GTGTTGCAACTAGTGTAAGGTTTCTCACTGGTCATTCAAGGAAAGGAGGGACCGACCCTC 1114
|||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||
Sbjct 1292 GTGTTGCAACTAGTGTAAGGCTTCTCATTGGTCATTCAAGGAAGGGAGGGACATACCCTC 1351
Query 1115 TGTTTGTTGCAGAGAATGCAGCTGATCCGGACACAACACTCGTTGTTTATATGGGTTTGG 1174
||||||||| ||||||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct 1352 TGTTTGTTGTAGAGAATGCAGCTGACCCGGATACAACACTTGTCGTTTATATGGGTTTCA 1411
Query 1175 GAACCTTACCTTCTCTTGCACAAAAACTAATGGACCATGGTCTCCCTTGTGATACACCAG 1234
||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1412 AAACTTTACCTTCTCTTCCACAAAAACTAATGGACCATGGTCTCCCTTTTGATACACCAG 1471
Query 1235 CTGTTGCGGTCGAACGTGGAACCACTCCTCTAC 1267
||| |||||| ||||||||||||||||||||||
Sbjct 1472 CTGCTGCGGTTGAACGTGGAACCACTCCTCTAC 1504
> AT3G30405.1 | Symbols: | transposable element gene | chr3:12019426-12025026
FORWARD LENGTH=5601
Length=5601
Score = 318 bits (172), Expect = 1e-85
Identities = 224/250 (90%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 503 CCACACCACCATCGACTCCATCTCCATCGCCATTCAAAGATGAAGTCTTTGTTAGGGAAA 562
|||||| ||||| | |||||||||||| || || ||||||||||||||||||| ||||
Sbjct 5351 CCACACGGCCATCAAATCCATCTCCATCACCGTTTGAAGATGAAGTCTTTGTTAGAGAAA 5410
Query 563 ACGACATTGCATCGCAGCTGCCTGAGCTGAAGAAGCTCTTGGCTGTGCTGAGAGAGAAGA 622
| ||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct 5411 ATGACATTGCATCGCGGCTACCTGAGCTGAAGAAGCTCTTGGTTGTGTTGAGAGAGAAGA 5470
Query 623 GAGTTAAAGGCTGCAAAGGTGGTGATTGTGGACCGGGGGATGTGTATCTGGTTGGGACAG 682
||||||||||||||||||| |||||||||||||| || ||||||||||| | |||||||
Sbjct 5471 GAGTTAAAGGCTGCAAAGGCGGTGATTGTGGACCCGGAGATGTGTATCTTCTGGGGACAG 5530
Query 683 GACCAGGAGATCCTGAGCTTTTGACTCTTAAAGCTGTCAGAGTTATTCAAAGTGCCGATC 742
||| |||||||||||||||||||||| ||||| |||| |||||||||||||||| |||||
Sbjct 5531 GACAAGGAGATCCTGAGCTTTTGACTTTTAAAACTGTAAGAGTTATTCAAAGTGTCGATC 5590
Query 743 TTTTGCTTTA 752
|||| |||||
Sbjct 5591 TTTTTCTTTA 5600
Score = 191 bits (103), Expect = 2e-47
Identities = 147/168 (88%), Gaps = 4/168 (2%)
Strand=Plus/Plus
Query 319 ATGGCTCTTGTCCAG-AGGATTCCCATTTCCTCCTCTAGTGTTCGGAATTGGCAACAAGC 377
||||||||||| | | | |||||| |||| ||| || ||| || ||||||||||||||||
Sbjct 1 ATGGCTCTTGTTCGGCA-GATTCCTATTTTCTCATCCAGTATTAGGAATTGGCAACAAGC 59
Query 378 TAGGACCAATTCCACTCCTATTTGCTGTTTACATTACAATACTGCATCTTCTTCTTCACC 437
||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 TAGGACCAATTTGAGTCCTATTTGTTGTTTACATTACAATACTGCATCTTCTTCTTCACC 119
Query 438 CTTTACAGAGAA-GCACTCTGTCGAGAGATACCAGAGGGATCAATGGC 484
|||| ||||||| | ||||| | ||||||||| ||||||||||| |||
Sbjct 120 CTTTGCAGAGAAAG-ACTCTTTTGAGAGATACTAGAGGGATCAAAGGC 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86144135220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5