BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493894
Length=2645
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein | ... 3960 0.0
> AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein
| chr5:16359430-16363792 REVERSE LENGTH=2684
Length=2684
Score = 3960 bits (2144), Expect = 0.0
Identities = 2516/2689 (94%), Gaps = 52/2689 (2%)
Strand=Plus/Plus
Query 3 CTCTCTGCTCTCaaaaaaaaaaCTAACCTTTGTCTAAAACCCAGAATCTGGGAAACCTTA 62
||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CTCGCTGCTCTCTTAAAAAAAACTAACCTTTGTCTAAAACCCAGAATCTGGTAAACCTTC 60
Query 63 AGAC-AAAAAATGTTTTACTCGCAATGTCTCGTATCGAGAAAAGGACCTTTAGGAGCTAT 121
| || |||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 61 ACACTCAAAAATGTTTTACTCGCATTGTCTAGTATCGAGAAAAGGACCTTTAGGAGCTAT 120
Query 122 TTGGGTCGCTGCCTATTTCTTCAAAAAGCTTAAGAAAGCTCAAGTCAAAGCTACTCATAT 181
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TTGGGTCGCTGCCTATTTCTTCAAAAAGCTTAAGAAATCTCAAGTCAAAGCTACTCATAT 180
Query 182 TCCTTCTTCCGTTGATCAGATCTTGCAAAAAGAGTTAGATGCGTTGACATACAGAGTTTT 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCTTCTTCCGTTGATCAAATCTTGCAAAAAGAGTTAGATGCGTTGACATACAGAGTTTT 240
Query 242 AGCGTATCTTCTTCTGGGTGTTGTAAGGATATATTCCAAGAAGGTGGACTTTTTGTTTGA 301
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 241 GGCGTATCTTCTTCTTGGTGTTGTAAGGATATATTCCAAGAAGGTTGACTTTTTGTTCGA 300
Query 302 TGATTGCAACAAAGCGTTGATCGGTGTTAAGGAGTTTGTGGCTAAGGAGAA-GAACAGAG 360
||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 301 TGATTGCAATAAAGCGTTGATCGGTGTAAAGGAGTTTGTGGCTAAGGA-AAGGAACAGAG 359
Query 361 AAAAGACAGGTGTTTCATTGCCTGCATCTATCGAGTGTTTTTCCATTGCTTTGCCTGAGA 420
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 AAAAGACAGGTGTATCATTGCCTGCATCTATCGAGTGTTTTTCCATTGCTTTACCTGAGA 419
Query 421 GATTTGAACTAGATGCTTTTGATCTTGGGATTTTGGAGGATTTTCATGGGGGAAATGTTA 480
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 420 GATTTGAACTAGATGCTTTTGATCTTGGGGTTCTGGAGGATTTTCATGGGGGAAATGTTA 479
Query 481 AGCCGCAGGAAGATATTACACTTAAAGATGGAAGTCCGGAACCAGAGAGCATGGACATGT 540
||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 480 AGCCGCATGAAGATATTACACTTAAAGATGGAAGTCAGGAAACAGAGCGCATGGACATGT 539
Query 541 ATTCAATGGAAAGGTTTGACATGGAAGAGGACCTTCTGTTTACGTTTCATGAGACTTTCT 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTCGATGGAAAGGTTTGACATGGAAGAGGACCTTCTGTTTACGTTTCATGAGACTTTCT 599
Query 601 CTGCCAATCATAATGAAAATAAACATGAGAGTTTTGCTCATGATATGGACA-TGGATGCA 659
|| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 600 CTACCAATCATAATGAAAATAAACATGAGAGTTTTGCTCATGATATGGA-ATTGGATGCA 658
Query 660 GAAAATGTCAGAGATACTACTGAAGAAGCATCGGTCAGAGTCGTTGAAGCGGAACCACTG 719
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 GAAAATGTCAGAGATACCACTGAAGAAGCATCCGTCAGAGTCGTTGAAGCGGAACCACTG 718
Query 720 GATTCTAATGAACCATCCAGAGATCATCAAAATGCATCCAGGCATAGAGAGCATCCAGAA 779
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 719 GATTCTAATGAACCATCCAGAGATCATCAAAATGCATCTAGGCATAGAGAGGATCCAGAA 778
Query 780 TCAGATGACATTCTTGTGGAACCGCGAATGTCTGAAGATATCAGAAGAGCTCAAGAAGAA 839
||||||||||||||| ||||||||| |||||| ||||||||| ||| |||||||||||||
Sbjct 779 TCAGATGACATTCTTCTGGAACCGCAAATGTCCGAAGATATCCGAATAGCTCAAGAAGAA 838
Query 840 GACACATTTAGAGAAACCATATCTACTATTGTGCAGAGACTAGTGGATCCTCATGAATCC 899
|| ||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 839 GATACAGTTAGAGAAACCATATGTACCATTGTGCAGAGACTAGTGGATTCTCATGAATCC 898
Query 900 TCAGGCGATAATCTACGCAGAGATGGTCACATAGAGAATTTAGAATC---G--------G 948
||||| |||||||||| |||||||||||||| ||||||||||||||| | |
Sbjct 899 TCAGGAGATAATCTACACAGAGATGGTCACACAGAGAATTTAGAATCGGAGAAAACCTCG 958
Query 949 -AGAAAACAAGTTGCGAAGAAATGCAGCATGA-AGGGTCCCTCCCATCTGAATGCGTAAG 1006
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct 959 AAGAAAACAAGTTGCGAAGAGATGCAGCATGACA-GGTCCCTCCCATCTGAATGCGGAAT 1017
Query 1007 ACCTGAAGCGATTCACAGGATTGAGGATCAACTTTGTAGTGCCACAAGAATTAATGGGGA 1066
||||||||| ||||| ||||||||||||||| || | ||||||||||||||||||||||
Sbjct 1018 ACCTGAAGCAATTCATGGGATTGAGGATCAACCTTCTGGTGCCACAAGAATTAATGGGGA 1077
Query 1067 GAAGGAGATCCCGGAGATGAGTACTCTAGAAGAACCAGAACCAGTATCTGTGACTGGTTC 1126
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 GAAGGAGATCCCTGAGATGAGTACTCTAGAAAAACCAGAACCAGTATCTGTGACTGGTTC 1137
Query 1127 CAGAGACTCGCCAGAAGGCGTAGAGAAATGTCGAGACCATAATGAAGCGGAAATGGGAAA 1186
|||||||| || |||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1138 CAGAGACTTGCAAGAAGGCGTAGAAAAATGTCGAGACCATAATGAAGCGGAAATGGCAGA 1197
Query 1187 CTTTGAGTTGCTTCATGGGTCTCATAAAGAGCAATCTGATACTTCTGAAGTGAATCTCCA 1246
|||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1198 CTTTGAATTGTTTCATGGGTCTCATAAAGAGCAATCTGAAACTTCTGAAGTGAATCTCCA 1257
Query 1247 TGGTTCCGAGAAAGGTTTTCTCTCTGACATGACTGTTTCAAAAGACCCTAGTAGAGGGTT 1306
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1258 TGGTTCCGAGAAAGGTTTTCTCTCTGACATGACTGTTTCTAAAGACCCTAGTAGCGAATT 1317
Query 1307 TAATGCAGCAGATACTCCAGTTGCTGTCACTCCCAAAACACCTTCGCGGGTGCAAATCTC 1366
||||||| |||||||||||||| |||||||||||||||||||||| ||| || |||| ||
Sbjct 1318 TAATGCAACAGATACTCCAGTTACTGTCACTCCCAAAACACCTTCCCGGTTGAAAATTTC 1377
Query 1367 TGAAGGGGGAACAAGTCCTCAGTTCTCGATCATCCCTACACCGGCTGCAAAGGAGTCTTC 1426
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1378 TGAAGGGGGAACAAGTCCACAGTTCTCGATCATCCCTACGCCGGCTGCGAAGGAGTCTTC 1437
Query 1427 TCGAGTTTCACGGAAAAGAAAATGTCTGATAGATGATGAAGTGCTAATTCCAAACAAAGT 1486
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1438 TCGAGTTTCACGGAAAAGAAAATGTCTGATAGATGATGAAGTGATAATTCCGAACAAAGT 1497
Query 1487 TATGAAGGAAATGATAGAGGACTCAAGTAAATTGCTTGCAAAACGGAAAAACGTACCTCA 1546
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1498 TATGAAGGAAATGATAGAGGACTCAAGTAAATTGCTTGCAAAACGGAGAAACGTACCTCA 1557
Query 1547 TACTGACTGTCCTGAGAGGAGAACCAAACGTTTTGCCAATCCTTTTCGAAGTTTCTTGGA 1606
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1558 TACTGACTGTCCTGAGAGGAGAACCAAACGTTTTGCCAATCCTTTTCGAAGTTTTTTGGA 1617
Query 1607 ACCTTTGATTCAGTATGGTTCTTCGGACCTCCAGTCGCTTTTTTGTCAACCCATCAAGCT 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 ACCTTTGATTCAGTATGGTTCTTCGGACCTCCAGTCGCTTTTTTGTCAACCCATCAAGCT 1677
Query 1667 TAAAAACTGGGCAACCACAGGAACTCCTAAAGATGCTAAAATCGCTAGACGTAAGGAAAA 1726
|||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct 1678 TAAAAACTGGGCAACCACAGGAACCCCTAAAGATACTAAAATCGCTAGACATAAGGAAAA 1737
Query 1727 TTCTTCTCTTGACACCGTCAGAACTCCTGGGGTTATTTTATCTTCAGATCAGACTGAGAA 1786
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1738 GTCTTCTCTTGACACTGTCAGATCTCCTGGGGTTATTTTATCTTCAGATCAGACTGAGAA 1797
Query 1787 TACTCAAGAAATTATGGAGACTCCTCAGGCTGCTGCTCTTGCTGGGCTGAAAGTGACAGC 1846
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1798 TACTCAAGAAATTATGGAGACTCCTCAGGCTGCTGCTCTCGCTGGGCTGAAAGTGACAGC 1857
Query 1847 CGGAAATAGTAACATGGTTTCGGTTGAGATGGGAGCAAGTTCTATGACTTCTGGAACTGC 1906
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1858 CGGAAATAGTAACGTGGTTTCGGTTGAGATGGGAGCAAGTTCTACAACTTCTGGAACTGC 1917
Query 1907 TCATCAAACAGAAAATGCCGCAGAGACACCTGTGAAGCCTTCAGTTATTGCTCCAGAAAC 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 TCATCAAACAGAAAATGCCGCAGAGACACCTGTGAAGCCTTCAGTTATTGCTCCAGAAAC 1977
Query 1967 ACCCGTGAGGACATCAGAGCAAACAGAGATTGCTCCAGAAACACCAGTGGTCTCTGAGCA 2026
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1978 ACCCGTGAGGACATCAGAGCAAACAGTGATTGCTCCAGAAACACCAGTAGTCTCTGAGCA 2037
Query 2027 AGTAGAGATTGCACCTGAAACGCCAGTGAGGGAATCAATGTCGAAAAGATTTTTCAAGGA 2086
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2038 AGTAGAGATTGCACCTGAAACGCCGGTGAGGGAATCAATGTCGAAAAGATTTTTCAAGGA 2097
Query 2087 CCCTGAGACCTGTTATAAAAAATCCAGACCTGCAAGTCCCTTCACTTCCTTTGAGGAGCA 2146
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 CCCTGGGACCTGTTATAAAAAATCCAGACCTGCAAGTCCCTTCACTTCCTTTGAGGAGCA 2157
Query 2147 GCCGTCTGTGTATTATGTGGAAAATAGAGATCTTGATACGATTTTAATGAACGACGAG-- 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2158 CCCGTCTGTGTATTATGTGGAAAATAGAGATCTTGATACGATTTTAATGAACGATGAGCA 2217
Query 2205 G-TGAATGCAGATGAAACACACGACTTGCAACAAGAGACATGGTCAGCAAGAACAAGGAA 2263
| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 2218 GGTGAATGCAGATGAAAGACAGGACTTACAACAAGAGACATGGTCCTCAAGAACAAGGAA 2277
Query 2264 TGTGGCGAAATTCTTGGAAAAGACGTTTGTGGAACAGAGGGAAAGAGAAGAAGAAGAAAA 2323
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 2278 TGTGGCGAAATTCTTGGAAAAGACGTTTTTGGAACAGAGGGAAAGAGAAGAAGAAGAGAA 2337
Query 2324 GGTGAGTTTGTTGCAACTGTGTAGAGGAAGAACTCAGAAGGAAAGCGCAAGCCTCTTCTA 2383
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2338 GGTGAGTTTGTTGCAACTGTGTAGAGGAAGAACTCAGAAGGAAAGCGCAAGACTCTTCTA 2397
Query 2384 CGAGACTTTGGTGTTGAAGACCAAAGGATACTTGGAAGTGAAGCAAAATCGTCCATATAG 2443
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2398 CGAGACTTTGGTGTTGAAGACCAAAGGATACGTGGAAGTGAAGCAAAATCATCCATATAG 2457
Query 2444 TGATGTTCTTCTCACGCCA-TT-CGCTAGACAACAAAAAGCTTGTTGAAAAATGG-T-T- 2498
||||||| |||||| || || | | |||| ||||||||||||||||||||||| | |
Sbjct 2458 TGATGTTTTTCTCATGCGTGTTTC-C-AGACCACAAAAAGCTTGTTGAAAAATGGATATT 2515
Query 2499 --C--C--T---------C---AGATTTCTTCGGTTAGGTTTCAGATTAGTGCTGTTAAA 2540
| | | | |||||||||| |||||||||||||||| || |||||
Sbjct 2516 TTCTTCACTTAAGATTTTCCTCAGATTTCTTCAGTTAGGTTTCAGATTAATGTTGTTAGC 2575
Query 2541 TTTTAGTATCTTCTAACAAAATAGCAATTTTGAGTTTTTCTTTTAAGTTAATTTTTAGTA 2600
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2576 TTTTAGTATCTTCTAACAAAATAGCTATTTTTAGTTTTTCTTTTAAGTTAATTTTTAGTA 2635
Query 2601 AAGAATAATTGACGATCTTT--TAGATGT--CTTATCAAGTTTTTAAGT 2645
| |||||||||||||||| || |||| ||||||||||||||||||
Sbjct 2636 A-GAATAATTGACGATCTAAAGTATATGTGTCTTATCAAGTTTTTAAGT 2683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131337056774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5