BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493897
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40830.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2041 0.0
AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectas... 992 0.0
> AT5G40830.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:16354380-16356273
REVERSE LENGTH=1620
Length=1620
Score = 2041 bits (1105), Expect = 0.0
Identities = 1251/1321 (95%), Gaps = 11/1321 (1%)
Strand=Plus/Plus
Query 39 ATCCAATAATAAGTTCAACAATAT-G-ACACAA-TTGTGAATTGATGCAGTATAAGCTAC 95
|||| || ||| |||||||||||| | ||| || ||| ||||||||||| ||||||||||
Sbjct 79 ATCCGATCATAGGTTCAACAATATGGAACA-AATTTG-GAATTGATGCAATATAAGCTAC 136
Query 96 ATTGAAGTATGGGATCCGTATCGCTAAAGATTGGCGATGGAAGCGCAAGATTCAAGCGAT 155
|||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 137 ATTGAAGTATGGGATCTGTATCGCTGAAGATTGGCGATGGAACCGCAAGATTCAAGCGAT 196
Query 156 CAACGCTTTTTTCTTCCGCCATCAACCTCCTTATGCTTTTCTCTATAGTCACTACAAATC 215
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CAACGCTTTTTTCTTCAGCTATCAACCTCCTTATGCTTTTCTCTATAGTCACTACAAATC 256
Query 216 TCTTTGCATTATACGCCTTCTCGTCTCGGTCCCAATCCCACACGCCACATCCTCTTCATT 275
|||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 257 TCTTTGCACTATACGCCTTCTCGTCTCGGTCTCAATCCCACACGCCACACCCTCTTCATT 316
Query 276 CCAACAATGTCTCTTTGGTTTCTCAACATCTATCACTCATCCTCAGAGAAATCGATTCGT 335
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 317 CCAACAATGTCTCTTTGGTTTCTCAACATCTCTCACTCATCCTCAGAGAAATCGATTCCT 376
Query 336 CCCACCGTACACTCTCTCTA-ATGGAGAAACAAATGATTGGTTTTGAATCTCTCGATCTC 394
|||||| |||||| ||| | ||||||||||| || ||||||| ||||||||||||||||
Sbjct 377 CCCACCACACACTCACTC-AGATGGAGAAACAGATTATTGGTTATGAATCTCTCGATCTC 435
Query 395 TCGCATCAAGAAGTTCCACAAGAGCTTAAACTTTTCCTCCAACAACATCAGCTTCCTCTT 454
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 436 TCGCAACAAGAAGTTCCACAAGAGCTTAAACTTTTCCTTCAACAACATCAGCTTCCTCTT 495
Query 455 GGTAAAGATTCTCGTACTGGTATCACACATATGGTTGCATCTGTTGGACATTCCTGTGAA 514
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 496 GGTAAAGATTCTCGTACTGGTATCACACAAATGGTTGCATCTGTTGGACATTCCTGTGAA 555
Query 515 ATGTCTCTAGATTTGTTATCTCAGTATATGTCGTACAATGTGTTTGAAAAGTGTCCGGAT 574
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 556 ATGTCTCTAGATTTGTTATCTCAGTATATGTCGTATAATGTCTTTGAAAAATGTCCTGAT 615
Query 575 GATTGGAGCCTAGCACAGAAGTTGATTCTCCGTGCTTGTGAACCGTTGCCACGCCGTCGT 634
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GATTGGAGCCTAGCTCAGAAGTTGATTCTCCGTGCTTGTGAACCGTTGCCACGCCGTCGA 675
Query 635 TGTTTGGCTAAAACAGTACAGAAGA-CGGGTCTCGCTTGGTTTCCTGATTCTTTGTGGAG 693
|||||||||||||| || || || | | |||||||||| |||||||||||||||||||||
Sbjct 676 TGTTTGGCTAAAACGGTGCATAA-ACCAGGTCTCGCTTTGTTTCCTGATTCTTTGTGGAG 734
Query 694 ACCAGTTAGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTTTCGAATGCTT 753
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ACCAGTTGGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTTTCGAATGCTT 794
Query 754 GAAAGCTAAGAAACTGAGCCGGGATTGTGTTGGTTGCTTTGATCTAGCTACTAGTCATGA 813
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GAAAGGTAAGAAACTGAGCCGGGATTGTGTTGGTTGCTTTGATCTAGCTACTAGTCATGA 854
Query 814 GAAAGACAGGTTTGTTAAGGTTAAAGGGAAGACTGATTTCTTGATAGATGATGTTTTGGG 873
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 855 GAAAGATAGGTTTGTTAAGGTTAATGGGAAGACTGATTTCCTGATAGATGATGTTTTGGA 914
Query 874 TTTAAGCGATGGGAAAATCCGAATCGGGTTTGATATTAGCAGTGGATCAGGTACATTTGC 933
|||| ||||||||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct 915 TTTAGGCGATGGGAAAATCCGAATAGGATTCGATATTAGCAGTGGATCAGGTACGTTTGC 974
Query 934 TGCTAGAATGGCTGAAAAGAATGTGAATATAATCAGTAACACATTGAATATAGATGCTCC 993
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 975 TGCTAGAATGGCTGAAAAGAATGTGAATATAATCAGTAATACATTGAATATAGATGCTCC 1034
Query 994 TTTCAGTGAATTCATAGCTGCGAGAGGGGTTTTTCCGTTGTTCATGAGTTTGGATCAGAG 1053
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1035 TTTCAGCGAATTCATAGCTGCGAGAGGAATTTTTCCGTTGTTCATGAGTTTGGATCAGAG 1094
Query 1054 ATTACCGTTCTACGACAATGTTTTCGATCTCATTCACGCTTCTAACGGATTGGATTTAGC 1113
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1095 ATTACCGTTCTACGACAATGTTTTCGATCTCATACATGCATCTAACGGATTGGATTTAGC 1154
Query 1114 GGCTAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATCGGATCTTGAA 1173
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GGTTAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATCGGATCTTGAA 1214
Query 1174 ACCCGGTGGATTGTTCTGGTTAGACAATTTCTATTGCGGTAATGATGAGAAGAAGAGAGT 1233
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1215 ACCCGGTGGATTGTTCTGGTTAGACAATTTCTATTGCGGTAACGATGAGAAGAAGAGAGT 1274
Query 1234 TCTTACGCGTTTGATAGAGCGGTTTGGGTATAAGAAGCTGAAATGGGTTGTTGGAGAGAA 1293
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1275 TCTTACGCGTTTGATAGAGAGGTTTGGGTATAAGAAGTTGAAATGGGTTGTTGGAGAGAA 1334
Query 1294 AACTGATG-TAGAGGTTTATCTCTCGGCTGTTCTGCAGAAGCCTGCCAGGATTTGATTGA 1352
|||||||| | ||||||| |||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1335 AACTGATGCT-GAGGTTTTTCTCTCGGCTGTTCTGCAAAAGCCTGCCCGGATTTGATTGA 1393
Query 1353 T 1353
|
Sbjct 1394 T 1394
> AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated
and RAD3-related | chr5:16342745-16353898 REVERSE
LENGTH=9189
Length=9189
Score = 992 bits (537), Expect = 0.0
Identities = 658/716 (92%), Gaps = 10/716 (1%)
Strand=Plus/Plus
Query 641 GCTAAAACAGTACAGAAGACGGGTCTCGC-TTGGTTTCCTGATTCTTTGTGGAGACCAGT 699
|||||||||||||| ||| | |||||||| | ||||| |||||||||||||||| | ||
Sbjct 8269 GCTAAAACAGTACATAAGCCAGGTCTCGCACT-GTTTCATGATTCTTTGTGGAGAACGGT 8327
Query 700 TAGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTTTCGAATGCTTGAAAGC 759
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 8328 CAGTAACAATAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTTTTGAATGCTTGAAAGG 8387
Query 760 TAAGAAACTGAGCCGGGATTGTGTTGGTTGCTTTGATCTAGCTACTAGTCATGAGAAAGA 819
| ||||||||||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 8388 T-CTTAACTGAGCCGGGATTTTGTTGGTTGCTTTGATCTAGCT-CTGGTCATGAGAAAGA 8445
Query 820 CAGGTTTGTTAAGGTTAAAGGGAAGACTGATTTCTTGATAGATGATGTTTTGGGTTTAAG 879
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| |
Sbjct 8446 TAGGTTTGTTAAGGTTAAAGTGAAGACTGATTTCCTGATAGATGATG-TTTGGGTTTAGG 8504
Query 880 CGATGGGAAAATCCGAATCGGGTTTGATATTAGCAGTGGATCAGGTACATTTGCTGCTAG 939
||||||||||||||||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct 8505 CGATGGGAAAATCCGAATCGGATTCGATATTAGCAGCGGATCAGGCACGTTTGCTGCTAG 8564
Query 940 AATGGCTGAAAAGAATGTGAATATAATCAGTAACACATTGAATATAGATGCTCCTTTCAG 999
|||||||||||||||| ||||||| ||| ||| ||||| ||||||||||||||||||||
Sbjct 8565 AATGGCTGAAAAGAATCTGAATATTATCGGTATTACATTAAATATAGATGCTCCTTTCAG 8624
Query 1000 TGAATTCATAGCTGCGAGAGGGGTTTTTCCGTTGTTC--A-TGAGTTTGGATCAGAGATT 1056
|||||||||||| | |||||| |||||||||||||| | |||||||||| |||||||
Sbjct 8625 CGAATTCATAGCTACAAGAGGGATTTTTCCGTTGTTCAGAGGGAGTTTGGATTAGAGATT 8684
Query 1057 ACCGTTCTACGACAATGTTTTCGATCTCATTCACGCTTCTAACGGATTGGATTTAGCGGC 1116
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 8685 CCCGTTCTATGACAATGTTTTTGATCTCATTCATGCTTCTAACGGATTGGATTTAGCGGT 8744
Query 1117 TAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATCGGATCTTGAAACC 1176
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 8745 TAGTAGTAAACCCGAGAAGCTAGAGTTCTTGATGTTTGATCTTGATCGGATCTTGAAACC 8804
Query 1177 CGGTGGATTGTTCTGGTTAGACAATTTCTATTGCGGTAATGATGAGAAGAAGAGAGTTCT 1236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8805 CGGTGGATTGTTCTAGTTAGACAATTTCTATTGCGGTAATGATGAGAAGAAGAGAGTTCT 8864
Query 1237 TACGCGTTTGATAGAGCGGTTTGGGTATAAGAAGCTGAAATGGGTTGTTGGAGAGAAAAC 1296
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 8865 TACGCGTTTGATAGAGAGGTTTGGGTATAAGAAGTTGAAATGGGTTGTTGGAGAGAAAAC 8924
Query 1297 TGATG-TAGAGGTTTATCTCTCGGCTGTTCTGCAGAAGCCTGCCAGGATTTGATTG 1351
||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 8925 TGATGCT-GAGGTTTTTCTCTCGGCTGTTCTGCAGAAGCCTGCCAGGATTTGATTG 8979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5