BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493903
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40770.1 | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16314... 1759 0.0
AT3G27280.2 | Symbols: ATPHB4, PHB4 | prohibitin 4 | chr3:10076... 784 0.0
> AT5G40770.1 | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16314850-16316719
REVERSE LENGTH=1589
Length=1589
Score = 1759 bits (952), Expect = 0.0
Identities = 1070/1125 (95%), Gaps = 15/1125 (1%)
Strand=Plus/Plus
Query 1 ATATCATAAACCCTAGCAAAAActctttcctctctcgtcgtctcaaatctc-tcttcctt 59
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATATCATAAACCCTAGCAGAAACTCTTTCCTCTCTCGTCGTCTCAAATCTCTTCTTCCTT 60
Query 60 ccttcttctctctcGATTCAAGCTAATCGACACACGCAAAAATGGGAAGCCAACAAGCGG 119
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 -CTTCTTCTCTCTCGATTCAAGATAATC--CACACGCAAAAATGGGAAGCCAACAAGCGG 117
Query 120 CGGTTTCGTTCCTTTCCAATTTGGCAAAGGCAGCTTTCGGTCTCGGAACGGCGGCGACGG 179
| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 118 CTGTTTCGTTCCTTTCCAATTTGGCGAAGGCTGCTTTCGGTCTTGGAACGGCGGCGACGG 177
Query 180 TGTTGAATACATCGCTTTTCACCGTTGACGGCGGAGAAAGAGCTGTTATCTTCGATCGAT 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGCTGAATACATCGCTTTTCACCGTTGACGGCGGAGAAAGAGCTGTTATCTTCGATCGAT 237
Query 240 TCAGAGGAGTGATGGATCAGACTGTTGGTGAAGGAACTCATTTCTTGATCCCGATTCTTC 299
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 238 TCAGGGGAGTGATGGATCAGACTGTGGGTGAAGGGACTCATTTCTTGATCCCGATTCTTC 297
Query 300 AGAGACCTCACATCTTCGATATCCGCACGAAGCCTCACACGTTCTCTTCAATCTCTGGAA 359
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 298 AGAGGCCTCACATCTTCGATATCCGCACGAAGCCTCACACGTTCTCTTCAATCTCTGGTA 357
Query 360 CTAAGGATCTCCAGATGGTTAATCTCACTCTTCGTGTTCTCTCTCGCCCTGAGGTGTCGC 419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 CTAAGGATCTCCAGATGGTTAATCTCACTCTTCGTGTTCTCTCTCGTCCTGAGGTGTCGC 417
Query 420 GTCTCCCGTATATTTTCCAAACCTTGGGTCTAGAGTATGACGAGAAGGTTCTGCCTTCGA 479
|||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 418 GTCTCCCGTACATCTTCCAAACTTTGGGTCTAGAGTATGACGAGAAGGTTCTTCCTTCGA 477
Query 480 TTGGAAATGAGGTTTTGAAAGCTGTGGTTGCACAGTTCAACGCTGACCAGCTTCTCACAG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 478 TTGGAAATGAGGTTTTGAAAGCTGTGGTTGCACAGTTCAACGCTGACCAGCTTCTCACTG 537
Query 540 AGCGTCCTCACGTCTCAGCACTTGTTCGAGAGTCGCTAATCAACCGTGCCAAGGACTTCA 599
|||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||||||
Sbjct 538 AGCGTCCTCACGTCTCAGCACTTGTTCGGGAGTCACTAATCACCCGTGCGAAGGACTTCA 597
Query 600 ACATTGTGCTTGACGATGTAGCTATCACGCATTTGTCCTATGGTGTGGAGTTTTCAAGGG 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ACATTGTGCTTGATGATGTAGCTATCACGCATTTGTCCTATGGTGTGGAGTTTTCAAGGG 657
Query 660 CTGTTGAGCAGAAACAAGTGGCTCAACAGGAGGCAGAGAGGTCTAAGTTTGTGGTGATGA 719
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 658 CTGTTGAGCAGAAACAAGTGGCTCAGCAAGAGGCAGAGAGGTCTAAGTTTGTTGTGATGA 717
Query 720 AGGCTGATCAAGAGAGGAGAGCTGCGGTTATAAGAGCTGAAGGTGAGAGTGAAGCTGCTC 779
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 AGGCTGATCAAGAGAGGAGAGCTGCGGTTATAAGAGCTGAAGGTGAAAGTGAAGCTGCTC 777
Query 780 AGTTGATTTCTGATGCTACGGCTAAAGCTGGAATGGGACTTATCGAGCTCAGGAGGATCG 839
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 778 AGTTGATTTCTGATGCTACGGCTAAAGCTGGTATGGGACTTATCGAGCTTAGGAGGATTG 837
Query 840 AGGCTTCAAGGGAGATTGCGTCTACACTTGCTAGGTCTCCTAATGTGGCGTACTTACCCG 899
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 AAGCTTCAAGGGAGATTGCGTCTACACTTGCTAGGTCTCCTAATGTGGCCTACTTACCCG 897
Query 900 GTGGCCAGAGCATGCTCTTTGCTCTGAACCGTTGATCTTGATCAGATTTGATGGTATGTT 959
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 898 GTGGCCAGAGCATGCTCTTTGCCCTGAACCGTTGATCTTGATCAGATATGATGGT-TGTT 956
Query 960 GTGGGGAGCAATG-GCGATATT--AATGATCAAGTTGTGAATCTGATTGAATCTAAACCG 1016
|||| |||| | |||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 957 -TGGG-AGCATTTTGCGATATTTTAATGATCAAGTTGTGAATCTGATTGAATCAAAAA-G 1013
Query 1017 GTAAAATGCTCTTTTGTTTTCTGATGAACTCTGAAGAAAGAAAAAAGAAACTAGTTGTTT 1076
|| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||
Sbjct 1014 GTGAAATGCTCTTTTGTTTT--GATGAACTCTGAAGAA-GAAAAA-GAAACTAGTTGTTT 1069
Query 1077 GAGTTGTCATTATTGTGTTCTGAATCTTGGCAAAATTTACTCTAC 1121
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1070 GAGTTGTCATTATTGTGTTCTGAATCTCGGCAAAATTTACTCTAC 1114
Score = 182 bits (98), Expect = 1e-44
Identities = 173/206 (84%), Gaps = 18/206 (9%)
Strand=Plus/Plus
Query 1218 TTTTTGCATAAACAGAGCAAGTTCAGAAACAAAGCAA-TAAAAGAAGAGAAATCATTCAA 1276
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct 1355 TTTTTGCATAAACAGAGCAAGTTCAGAAACAAAGCAAATAAA-GAAGAGAAATCATGAAA 1413
Query 1277 -ACTAAGCCTTT-CTATCGATATCCATTTTATCCATCGGTTTTAGTAttttttttG--GG 1332
| || |||||| ||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1414 GA-TA-GCCTTTTCTATCGAGATCCATTTTATCCATCGGTTTTAGTTTTTTTTTTTTTGG 1471
Query 1333 TCATCTAATGATGATGTAAT-ACT-TCAGTAAA--CTGAACCGAAACCTAGATTCAACTT 1388
|||||||||||| ||| | | ||| | ||||| | | || |||||| |||||||
Sbjct 1472 TCATCTAATGATAATG-A-TGACTAT--GTAAAGACGGCGTCGGTTCCTAGACTCAACTT 1527
Query 1389 ATGTTTGTGTGTGTCAACAAACTCTA 1414
|||| || |||||||||||||||||
Sbjct 1528 ATGT--GTCTGTGTCAACAAACTCTA 1551
> AT3G27280.2 | Symbols: ATPHB4, PHB4 | prohibitin 4 | chr3:10076819-10078421
FORWARD LENGTH=1295
Length=1295
Score = 784 bits (424), Expect = 0.0
Identities = 705/841 (84%), Gaps = 18/841 (2%)
Strand=Plus/Plus
Query 98 AAAATGGGAAGCCAACAAGCGGCGGTTTCGTTCCTTTCCAATTTGGCAAAGGCAGC-TTT 156
||||||||||| ||||||| ||| ||||||| || | || ||||| ||||| || |||
Sbjct 83 AAAATGGGAAGTCAACAAGTAGCGATTTCGTTTCTGACGAACTTGGCGAAGGCGGCGTTT 142
Query 157 CGGTCTCGGAACGGCGGCGACGGTGTTGAA-TACATCGCTTTTCACCGTTGACGGCGGAG 215
||| | || ||||||||||| | || | | ||||| | ||| ||||| || || |
Sbjct 143 GGGT-TAGGTGTGGCGGCGACGGCACTAAACT-CGTCGCTCTACACTGTTGATGGTGGCG 200
Query 216 AAAGAGCTGTTATCTTCGATCGATTCAGAGGAGTGATGGATCAGACTGTTGGTGAAGGAA 275
| ||||||||| | |||||||||||||| |||||| |||||||||| || || ||||| |
Sbjct 201 AGAGAGCTGTTTTGTTCGATCGATTCAGGGGAGTGTTGGATCAGACCGTCGGCGAAGGGA 260
Query 276 CTCATTTCTTGATCCCGAT-TCTTCAGA-GACCTCACATCTTCGATATCCGCACGAAGCC 333
||||||||||||||||| | ||| |||| | || ||||| | |||||| || ||||| ||
Sbjct 261 CTCATTTCTTGATCCCG-TATCTCCAGACG-CCGCACATATACGATATTCGTACGAAACC 318
Query 334 TCACACGTTCT-CTTCAATCTCTGGAACTAAGGATCTCCAGATGGTTAATCTCACTCTTC 392
|||||| |||| || ||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 319 TCACACTTTCTCCTCCAA-ATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCCTTC 377
Query 393 GTGTTCTCTCTCGCCCTGAGGTGTCGCGTCTCCCGTATATTTTCCAAACCTTGGGTCTAG 452
||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct 378 GTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGTACATTTTCCAAACATTGGGTCTTG 437
Query 453 AGTATGACGAGAAGGTTCTGCCTTCGATTGGAAATGAGGTTTTGAAAGCTGTGGTTGC-A 511
| || || ||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 438 AATACGATGAGAAGGTTCTTCCATCGATTGGAAATGAGGTCTTGAAAGCTGTGGTTGCTA 497
Query 512 CAGTTCAACGCTGACCAGCTTCTCACAGAGCGTCCTCACGTCTCAGCACTTGTTCGAGAG 571
| ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| ||
Sbjct 498 -ATTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCGTGA- 555
Query 572 T-CGCTAATCAACCGTGCCAAGGACTTCAACATTGTGCTTGACGATGTAGCTATCACGCA 630
| | || ||||| ||||||| ||| || ||||||| ||| ||||| |||| || || ||
Sbjct 556 TGCTCTTATCAAGCGTGCCAGGGAATTTAACATTGAGCTCGACGACATAGCCATTACTCA 615
Query 631 TTTGTCCTATGGTG-TGGAGTTTTCAAGGGCTGTTGA-GCAGAAACAAGTGGCTCAACAG 688
|| || || |||| | ||||| || ||||| || || || ||| ||||||||||| |||
Sbjct 616 CTTATCGTACGGTGCT-GAGTTCTCGAGGGCAGTGGAGGC-GAAGCAAGTGGCTCAGCAG 673
Query 689 GAGGCAGAGAGGTCTAAGTTTGTGGTGATGAAGGCTGATCAAGAGAGGAGAGCTGCGGTT 748
|| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GAAGCTGAAAGGTCAAAGTTTGTGGTGATGAAGGCTGATCAAGAGAGGAGAGCTGCGGTT 733
Query 749 ATAAGAGCTGAAGGTGAGAGTGAAGCTGCTCAGTTGATTTCTGATGCTACGGCTAAAGCT 808
|||||||| ||||||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct 734 ATAAGAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATATCAGATGCAACAGCTAAAGCA 793
Query 809 GGAATGGGACTTATCGAGCTCAGGAGGATCGAGGCTTCAAGGGAGATTGCGTCTACACTT 868
||||||||||| || ||||| |||||||| || |||||||||||| ||||| |||| ||
Sbjct 794 GGAATGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCGGCTACTCTG 853
Query 869 GCTAGGTCTCCTAATGTGGCGTACTTACCCGGTGGCCAGAGCATGCTCTTTGCTCTGAAC 928
||||||||||| || ||||| |||||||| ||||| || |||||||||||| |||||||
Sbjct 854 GCTAGGTCTCCGAACGTGGCTTACTTACCTGGTGGACAAAGCATGCTCTTTAATCTGAAC 913
Query 929 C 929
|
Sbjct 914 C 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5