BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493905 Length=780 Score E Sequences producing significant alignments: (Bits) Value AT5G40750.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 512 2e-144 > AT5G40750.1 | Symbols: | FBD / Leucine Rich Repeat domains containing protein | chr5:16308356-16309819 FORWARD LENGTH=894 Length=894 Score = 512 bits (277), Expect = 2e-144 Identities = 396/450 (88%), Gaps = 21/450 (5%) Strand=Plus/Plus Query 1 ATGGCTGTCTATTTGGACGATGGTACCACG-A-CTCG-ATCATTGCGACTCCACAAGGCA 57 ||||| || ||||||||||||||| | || | || | |||||||||||||||||||||| Sbjct 1 ATGGCAGTTTATTTGGACGATGGT-GC-CGTAGCT-GAATCATTGCGACTCCACAAGGCA 57 Query 58 CCTATATTAGAAAGTTTGGA-TATAGAACTCGGTCCACATTGTCCTGTTGATGCTAACGT 116 |||||||||||||| || || |||| ||||||||||||||||||||||| |||||||||| Sbjct 58 CCTATATTAGAAAGATT-GACTATAAAACTCGGTCCACATTGTCCTGTTAATGCTAACGT 116 Query 117 GGGAAAGTGGATAGCAAATGCGGTTGATCGTAGGGTTTTTGTAGATGTTTCTTCTCCGGT 176 |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 117 GGGAAAGTGGATTGGAAATGCGGTTGATCGCAGGGTTTTTGTAGATGTTTCTTCTCCGGT 176 Query 177 ATGCCTCCCATCC-CTCAAACGTCTTCACCTTGTCTCTGTGGTGTACAAAGATGAAGATT 235 |||||||||| || ||||||||||||| |||||||| |||||| ||||||||||| |||| Sbjct 177 ATGCCTCCCA-CCTCTCAAACGTCTTCTCCTTGTCTTTGTGGTATACAAAGATGATGATT 235 Query 236 CTGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCAAATATTTGTATGTGTTGCGGCATG 295 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 236 ATGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCGAATATTTGTATGTGTTGCAACATG 295 Query 296 ACCAAGACAACGTGACCAATTTTAGTGTAAAAGTGCCATCTTTAGAGACCTTAACGTATT 355 | |||||||| ||||| || |||||||||||||| |||||||||||||| |||| |||| Sbjct 296 AGCAAGACAATGTGACAAAGTTTAGTGTAAAAGTTCCATCTTTAGAGACTTTAATATATT 355 Query 356 GTAAT-GTGAAACCAAAAGTAGTCGGCGAAGAAGATGTACAAGATATTGGAGGATCTTTG 414 | || | |||| |||||||| | | ||| | || | ||||||||| |||||||| Sbjct 356 TTTATCG-GAAAGCAAAAGTACTTGACGA-G--GA---A---GATATTGGAAGATCTTTG 405 Query 415 GCCATAGATTCTAAGATTTTAAAGGAATTC 444 |||||||||||||||||||||||| ||||| Sbjct 406 GCCATAGATTCTAAGATTTTAAAGAAATTC 435 Score = 375 bits (203), Expect = 2e-103 Identities = 234/249 (94%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 509 AACCGAATGATGTTCCACTATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAACGAAT 568 ||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| Sbjct 590 AACCGAATGATATTCCTCCATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAAAGAAT 649 Query 569 ATGGAG-GAACAAGCGAAGAGAAACATGTATTAAGTTACATTCTTGCCAACTCCAAATGT 627 |||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 650 ATGGAGCG-ACAAGCGAAGAGAAACAAGTGTTAAGTTACATTCTTGCCAACTCCAAATGT 708 Query 628 TTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATaaaaaaaaGATAATG 687 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 709 TTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAGAAGATAATG 768 Query 688 AAGGAGTTAAAATCCATTTATAGGATTTCAACATCATCTCAGCTTCTATTCTCCACTCAA 747 |||||||| |||||||| |||||||| |||||| ||||||||||||| |||||||||||| Sbjct 769 AAGGAGTTGAAATCCATGTATAGGATATCAACAACATCTCAGCTTCTCTTCTCCACTCAA 828 Query 748 TTGGAGTTT 756 |||||||| Sbjct 829 CTGGAGTTT 837 Score = 63.9 bits (34), Expect = 2e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 471 TTACCCTAATGACAAATTTATGAGATCTCTTTCCTCA 507 ||||||| ||||||||||||||||||||||||||||| Sbjct 516 TTACCCTGATGACAAATTTATGAGATCTCTTTCCTCA 552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37926780985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5