BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493905
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40750.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 512 2e-144
> AT5G40750.1 | Symbols: | FBD / Leucine Rich Repeat domains containing
protein | chr5:16308356-16309819 FORWARD LENGTH=894
Length=894
Score = 512 bits (277), Expect = 2e-144
Identities = 396/450 (88%), Gaps = 21/450 (5%)
Strand=Plus/Plus
Query 1 ATGGCTGTCTATTTGGACGATGGTACCACG-A-CTCG-ATCATTGCGACTCCACAAGGCA 57
||||| || ||||||||||||||| | || | || | ||||||||||||||||||||||
Sbjct 1 ATGGCAGTTTATTTGGACGATGGT-GC-CGTAGCT-GAATCATTGCGACTCCACAAGGCA 57
Query 58 CCTATATTAGAAAGTTTGGA-TATAGAACTCGGTCCACATTGTCCTGTTGATGCTAACGT 116
|||||||||||||| || || |||| ||||||||||||||||||||||| ||||||||||
Sbjct 58 CCTATATTAGAAAGATT-GACTATAAAACTCGGTCCACATTGTCCTGTTAATGCTAACGT 116
Query 117 GGGAAAGTGGATAGCAAATGCGGTTGATCGTAGGGTTTTTGTAGATGTTTCTTCTCCGGT 176
|||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 GGGAAAGTGGATTGGAAATGCGGTTGATCGCAGGGTTTTTGTAGATGTTTCTTCTCCGGT 176
Query 177 ATGCCTCCCATCC-CTCAAACGTCTTCACCTTGTCTCTGTGGTGTACAAAGATGAAGATT 235
|||||||||| || ||||||||||||| |||||||| |||||| ||||||||||| ||||
Sbjct 177 ATGCCTCCCA-CCTCTCAAACGTCTTCTCCTTGTCTTTGTGGTATACAAAGATGATGATT 235
Query 236 CTGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCAAATATTTGTATGTGTTGCGGCATG 295
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 236 ATGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCGAATATTTGTATGTGTTGCAACATG 295
Query 296 ACCAAGACAACGTGACCAATTTTAGTGTAAAAGTGCCATCTTTAGAGACCTTAACGTATT 355
| |||||||| ||||| || |||||||||||||| |||||||||||||| |||| ||||
Sbjct 296 AGCAAGACAATGTGACAAAGTTTAGTGTAAAAGTTCCATCTTTAGAGACTTTAATATATT 355
Query 356 GTAAT-GTGAAACCAAAAGTAGTCGGCGAAGAAGATGTACAAGATATTGGAGGATCTTTG 414
| || | |||| |||||||| | | ||| | || | ||||||||| ||||||||
Sbjct 356 TTTATCG-GAAAGCAAAAGTACTTGACGA-G--GA---A---GATATTGGAAGATCTTTG 405
Query 415 GCCATAGATTCTAAGATTTTAAAGGAATTC 444
|||||||||||||||||||||||| |||||
Sbjct 406 GCCATAGATTCTAAGATTTTAAAGAAATTC 435
Score = 375 bits (203), Expect = 2e-103
Identities = 234/249 (94%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 509 AACCGAATGATGTTCCACTATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAACGAAT 568
||||||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 590 AACCGAATGATATTCCTCCATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAAAGAAT 649
Query 569 ATGGAG-GAACAAGCGAAGAGAAACATGTATTAAGTTACATTCTTGCCAACTCCAAATGT 627
|||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 650 ATGGAGCG-ACAAGCGAAGAGAAACAAGTGTTAAGTTACATTCTTGCCAACTCCAAATGT 708
Query 628 TTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATaaaaaaaaGATAATG 687
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 709 TTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAGAAGATAATG 768
Query 688 AAGGAGTTAAAATCCATTTATAGGATTTCAACATCATCTCAGCTTCTATTCTCCACTCAA 747
|||||||| |||||||| |||||||| |||||| ||||||||||||| ||||||||||||
Sbjct 769 AAGGAGTTGAAATCCATGTATAGGATATCAACAACATCTCAGCTTCTCTTCTCCACTCAA 828
Query 748 TTGGAGTTT 756
||||||||
Sbjct 829 CTGGAGTTT 837
Score = 63.9 bits (34), Expect = 2e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 471 TTACCCTAATGACAAATTTATGAGATCTCTTTCCTCA 507
||||||| |||||||||||||||||||||||||||||
Sbjct 516 TTACCCTGATGACAAATTTATGAGATCTCTTTCCTCA 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5