BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493907
Length=415
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40730.1 | Symbols: AGP24, ATAGP24 | arabinogalactan protein... 571 2e-162
> AT5G40730.1 | Symbols: AGP24, ATAGP24 | arabinogalactan protein
24 | chr5:16301075-16301520 FORWARD LENGTH=446
Length=446
Score = 571 bits (309), Expect = 2e-162
Identities = 365/391 (93%), Gaps = 8/391 (2%)
Strand=Plus/Plus
Query 31 Caaaaaaaa--aaaaaCGTTTTTGACG--AA-GATGATGATGAAGAAGATGTTTGTTCAG 85
||||||||| ||||||||||||| | || ||||||||||| ||||||||||||||||
Sbjct 49 CAAAAAAAACTCAAAACGTTTTTGAAGATAATGATGATGATGACGAAGATGTTTGTTCAG 108
Query 86 ATCGCTGTGGTTTGTCTATTGGCGACGATCGCCGTTGTGTCCGCTCATGAAGGTCACCAC 145
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct 109 ATCGCTGTGGTTTGTCTATTGGCGACGATGGCCGTTGTGTCCGCCCACGAGGGTCACCAC 168
Query 146 CACCATGCTCCGGCTCCAGCACCAGGACCCGCATCTAGCTCAGCCGTTGTTTCGGCCACC 205
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 169 CACCATGCTCCGGCTCCAGCACCAGGACCCGCATCTAGCTCAACCGTTGTTTCGGCCACC 228
Query 206 AATATGTTCACCGTCTTGGCTTTTGCCGCCGTGGCTCTCGTCGTTGGTTCCAACCATTAA 265
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 229 AATATGTTCACCGTCTTGGCTATTGCTGCCGTGGCTCTCGTCGTTGGTTCCAACCACTAA 288
Query 266 GTTGGTTATTACATTCGTCTTTTTGTTTCAGTTTCTATGAA-TTGTTCTCTTGACTTTTA 324
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 289 GTTGGTTATTACATTCGTCGTTTTGTTTCGGTTTCTATGAAATTGTTCTCTTGACTTTTA 348
Query 325 ATAtttttttGAAAATTTCTCATTTGTTTTATAACTCTCTCCATGTTGATCTGATTTCTT 384
|||| |||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 349 ATATATTTT-GAATTTTTCTCATTTGTTTT-TAACTCTCTCTATGTTGATCTGATTTCTT 406
Query 385 GAATAAAATAAAAGTTTATTGAACGTTTGTT 415
|||||||||||||||||||||||||| ||||
Sbjct 407 GAATAAAATAAAAGTTTATTGAACGTGTGTT 437
Score = 71.3 bits (38), Expect = 7e-12
Identities = 41/42 (98%), Gaps = 1/42 (2%)
Strand=Plus/Plus
Query 1 ACAAACAACACAAATCTTTTTCTCATTCATCaaaa-aaaaaa 41
||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ACAAACAACACAAATCTTTTTCTCATTCATCAAAAGAAAAAA 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19654689859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5