BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493908
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40720.1 | Symbols: | Domain of unknown function (DUF23) | ... 2863 0.0
AT3G27330.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 965 0.0
> AT5G40720.1 | Symbols: | Domain of unknown function (DUF23)
| chr5:16297898-16300001 FORWARD LENGTH=2025
Length=2025
Score = 2863 bits (1550), Expect = 0.0
Identities = 1823/1954 (93%), Gaps = 22/1954 (1%)
Strand=Plus/Plus
Query 1 TATTCTATTCTTTCAGAAAATTTTTATCGACCTAAAATCTTCGTAGCCTGCGACAAAGAG 60
|||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 9 TATTCTATTCCTTCAGAAAATTTTTATCGTCCTAAAATCTTCGTAGCCTGCAACAAAGA- 67
Query 61 AGAGACTAAGAAAGAACTAAAATATTTTGCTTCATCTAATTACtttttt--tttGGATTT 118
| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 68 A-AGACTAAGAAAGAACTAAAATATTTTGCTTCGTCTAATTACTTTTTTCCTTTGGATTT 126
Query 119 AATTCTCAGCCATCGCCGCCGTTTTCGGCGGTTTAAAAGATGAAGAACCGTAGGAAACGC 178
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 127 AATTCTCAGCCATCGCCGCCGTTTTCGGCGGTGTAAAAAATGAAGAACCGTAGGAAACGC 186
Query 179 GGTGGTTTAAGCGGTGGCGACGTCGTTGTTTCATGGAGAAGAtttttccgacttgtttct 238
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 187 GGTGGTTTAAGCAGTGTCGACGTCGTTGTTTCATGGAGAAGATTTTTCCGATTTGTTTCT 246
Query 239 ttgttcgtcttctccttcgttctcttctctgctttgttcatcttcttcGGGAAAATTCGA 298
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 247 TTGTTCGTCTTCTCCTTCGTTCTCTTCTCTGCTTTCTTCATCTTCTTAGGCAAAATTCGA 306
Query 299 CCGGTGGTGCGGACATCGGTCAACGCAGTGCTCCGTGGTTCTGTACCGGCGGTTAAGGTG 358
|||||||||||| | |||||||||||||| || |||||||||||||||| ||||||||||
Sbjct 307 CCGGTGGTGCGGTCTTCGGTCAACGCAGTTCTTCGTGGTTCTGTACCGGTGGTTAAGGTG 366
Query 359 GTGACGATCCATGAAGCAGTTGAGTTTCCCGACCAAACAATGATTTTCCTAAAATACCCT 418
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 367 ATCACGATCCATGAAGCAGTTGAGTTTCCCGACCAAACATTGATTTTCCTAAAATACCCT 426
Query 419 CCATATTCTCGGTTATTTACAAAAGAGGACCTCTTTTGCGTTTTCTCCGACGTAAACGAT 478
|||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 427 CCATCTTCTCGGTTTTTTACGAAAGAGGACCTCTTTTGCGTTTTCTCCGACGTAAACGAT 486
Query 479 TCGTCTAAACTATTTAAAGAGATTCCGTTCGCGGTGGAAACCGACGACTATGGCCGTCAG 538
||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 487 TCGTCTAAACTTTTTAAAGAGCTTCCTTTCGCGGTGGAAACCGACGACTATGGCCGTCAG 546
Query 539 ATCGTACGGTGTTCAGCCGTTCCACGTGGCAATACTGTATCCCTCGCCGTTTCGAGATGG 598
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 547 ATCGTACGGTGTTCCGCCGTGCCTCGTGGCAATACTGTATCCCTCGCCGTTTCGAGATGG 606
Query 599 ACGGTTGATAATAATAATCTCCAAGTAGGGCTCACACACCGATGGGATTGGCTGGTGTAC 658
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AGGGTTGATGATTATAATCTCCAAGTAGGGCTCACACACCGATGGGATTGGCTGGTGTAC 666
Query 659 GACGCCGTGATCGACGACGACAATTCCACGGTGGTTTTTGTCAAGGGGCTTAATCTACGG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GACGCCGTGATCGACGACGACAATTCCACGGTGGTTTTTGTCAAGGGGCTTAATCTACGG 726
Query 719 CCAGGAAAGGTTGCTGACGTGTCGAGATATGAGTGCGTGTACGGTTGGGATTTTACAAAG 778
||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||
Sbjct 727 CCAGGAAAGGTTGCTGACGCGTCGAGATATGAGTGTGTATACGGTTGGGATTTCACAAAG 786
Query 779 CCCAAACTTTTGCTTAGAGCACAAGTTATCTCTGCGGCCCAAGAGATCGTACGATGCAAA 838
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 787 CCCAAACTTTTGCTTAGAGCACAAGCTATCTCTGCGGCCCAAGAGATCGTACGTTGTAAA 846
Query 839 ACGCCACTAACAGTATTAGACGGCCCAAGAAAGGCCCAATCTCAACCGGTGAAAGTTTCT 898
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 847 ACGCCACTGACAGTATTAGACGGCCCAAGAAGGGCCCAATCTCAACCGGTGAAAGTTTCT 906
Query 899 GTGAGGATTAAAGGAAGTAGGATGCTTCCTTCTGTTGC-CAACCCAATTAAACGTCCGGG 957
|||||||| ||||||||| |||||||||||||||| || | | |||||||||||||||||
Sbjct 907 GTGAGGATCAAAGGAAGTGGGATGCTTCCTTCTGTAGCTC-ATCCAATTAAACGTCCGGG 965
Query 958 TCGGGTCAAAGACACGAAAACGTTTGAGACGTGTGTTTGTACCATGACGCGAAACGCAGC 1017
|||| |||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 966 TCGGATCAAAGTCTCGAAAACGTTTGAAACGTGTGTTTGCACCATGACGCGAAACGCAGC 1025
Query 1018 AAACGTTTTGA-GAGAATGGGTAATGTACCACGCCGGAATCGGCGTTCAACGGTGGTTCA 1076
||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1026 AAACGTTTT-ACGAGAATGGGTGATGTATCACGCCGGAATCGGCGTTCAACGGTGGTTCA 1084
Query 1077 TCTACGACAACAACAGCGACGACGACATTGTTTCCGAGATCAAGAATCTAGAAAATCGCG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TCTACGACAACAACAGCGACGACGACATTGTTTCCGAGATCAAGAATCTAGAAAATCGCG 1144
Query 1137 GTTACAACATCTCGAGACATTTTTGGCCGTGGATAAAAACTCAAGAAGCAGGATTCGCCA 1196
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1145 GTTACAACATCTCGAGACATTTTTGGCCGTGGATCAAAACTCAGGAAGCAGGATTCGCAA 1204
Query 1197 ATTGCGCGATTCGAGCAAAGAGCGATTGCGATTGGGTTGCGTTTATCGACGTCGACGAGT 1256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1205 ATTGCGCGATTCGAGCAAAGAGCGATTGCGATTGGGTCGCGTTTATCGACGTCGACGAGT 1264
Query 1257 TCTTCTACATCTCTTCTGGTCAAAC-CTTAACCGACGTAATCAGAAATCACAC-A-A-CA 1312
||||||||||| | ||||||||||| || |||| ||||||||||||||||||| | | ||
Sbjct 1265 TCTTCTACATCCCCTCTGGTCAAACTCT-AACCAACGTAATCAGAAATCACACGACAACA 1323
Query 1313 ---TC---GTCCGGCGAGATTGGTGAAATTCGAACGCCGTGTCACAGTTTCGGACCGTCG 1366
|| |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1324 CCATCATCGTCCGGCGAGATCGGTGAAATTCGAACGCCGTGTCACAGTTTTGGACCGTCG 1383
Query 1367 GGACTTAGCGATCCACCGGGCGGTGGAGTCACGGCGGCTTATACGTGTCGTATGGCGTTA 1426
|||||||| ||||||||| || | |||||||| ||||| || || |||||||||||||||
Sbjct 1384 GGACTTAGAGATCCACCGCGCAGCGGAGTCACAGCGGCGTACACATGTCGTATGGCGTTA 1443
Query 1427 CCGGAGAGACACAAGAGCATAATCAGACCGGAATCGCTAAACGCGACGCTGATAAACGTG 1486
||||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1444 CCGGAGAGACATAAAAGCATAATTAGACCGGAATCGCTAAACGCAACGCTAATAAACGTC 1503
Query 1487 GTGCATCATTTTCACTTAAAAGAAGGATTCGCGTTCGCTGACGTGGATAAGGGTATGATG 1546
|| |||||||||||||||||||||| ||||||||| | ||||||||||||| ||| ||||
Sbjct 1504 GTTCATCATTTTCACTTAAAAGAAGAATTCGCGTTTGTTGACGTGGATAAGAGTACGATG 1563
Query 1547 GTAATTAACCACTATAAATATCAGGTTTGGGAGATATTTAAAGAGAAGTTTAAAAGGAGA 1606
||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1564 GTAATTAACCATTATAAATATCAGGTTTGGGATATTTTTAAGGAGAAGTTTAAAAGGAGA 1623
Query 1607 GTGGCGACGTACGTGGCGGATTGGCAAAACGAAGAGAATGTCGGGTCGAAAGATCGGGCC 1666
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GTAGCGACTTATGTGGCGGATTGGCAAAACGAAGAGAATGTCGGGTCGAAAGATCGGGCA 1683
Query 1667 CCCGGATTAGGGACCCGACCCGTTGAACCGTCTGATTGGGCTGAGAGGTTTTGTGAAGTG 1726
|| || ||||||||||||||||||||||| |||||||||||||||| || ||||| |||
Sbjct 1684 CCTGGTTTAGGGACCCGACCCGTTGAACCAACTGATTGGGCTGAGAGATTCTGTGAGGTG 1743
Query 1727 AGAGATATTGGGCTTAGGGATTGGGTGTTGGATAATTTCAGGGACCGTAAAACGCAGCGT 1786
|| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1744 AGCGATATTGGGCTTAGGGATTGGGTGTTGGAGAAATTCAGTGACCGTAAAACGCAGCGT 1803
Query 1787 TTAGTATGGGAGAGAGAAGCGAGGAGAGTGGAAGATGAAGTTATAGCTCAAATGGGCTCG 1846
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1804 TTAGTATGGGAGAGAGAAGCAAGGAGAGTGGAAGATGAAGTTATAGTTCAAATGGGCTCG 1863
Query 1847 TGGGCTGATAAAAGGGTTGGTCGGAAGAGGAAAAAGCAGTTGAAAGCCCAATAGATTTTG 1906
||||| |||||||| ||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1864 TGGGCCGATAAAAGAGTTGGTCGGAAGAGGAAAAAGCAATTAAAAGCCCAATAGGTTTTG 1923
Query 1907 ttttttttttCCTAATTTTTTCCACGGTGAAAAA 1940
||||| ||||| |||||| |||||||||||||
Sbjct 1924 TTTTTGTTTTCTTAATTT---CCACGGTGAAAAA 1954
Score = 63.9 bits (34), Expect = 6e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1940 ATTTGTAAATATTGATTGCTTCCCGGGGGaaaaaaaa 1976
|||||||||||||||||||||||||||| ||||||||
Sbjct 1976 ATTTGTAAATATTGATTGCTTCCCGGGGAAAAAAAAA 2012
> AT3G27330.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:10116950-10120645 REVERSE LENGTH=2871
Length=2871
Score = 965 bits (522), Expect = 0.0
Identities = 1165/1468 (79%), Gaps = 74/1468 (5%)
Strand=Plus/Plus
Query 358 GGTGACGATCCATGAAGCAGTTG-AGTTTCCCGACCAAACAATGATTTTCCTAAAATACC 416
||| ||||| | |||||| | || | || || || ||||| || |||||||||||||||
Sbjct 354 GGTTACGATTCGTGAAGC-GGTGAAATTACCTGAACAAACTCTGGTTTTCCTAAAATACC 412
Query 417 CTCCATAT-TC-TCGGTTATTTACAAAAGAGGACCTCTTTTGCGTTTTCTCCGACGTAAA 474
|| || | || |||||||||||||||||| || ||| |||||||||||| | ||
Sbjct 413 CT-CA-GTCTCGTCGGTTATTTACAAAAGACGATCTCATTTGCGTTTTCT-C--CG---- 463
Query 475 CGATTCGTCTAAACTATTTAAAGAGAT-TCCGTTC-GCGGTGGAAACCGACGACTATGGC 532
| |||||| || ||| |||| | | |||| | || ||||| | ||| | | |||
Sbjct 464 -G-TTCGTCGAAGCTACGGAAAGTG-TATCCG-ACGGCTGTGGACAGAGACAAATTTGGA 519
Query 533 CGTCAGATCGTACGGTGT--TCAGCCGTTCCACGTGGCAATACTGTATCCCTCGCCGTTT 590
||||||||||||||||| | || || ||||||||| | || | || || |||||||
Sbjct 520 GGTCAGATCGTACGGTGTCCTGAGACG--CCACGTGGCTACACCATTTCGCTTGCCGTTT 577
Query 591 CGAGATGGACGGTTGATAATAATAATCTCCAAG-TAGGGCTC-ACACACCGATGGGATTG 648
||||||||||| | || || |||||| | | || | | || ||||| | |||||
Sbjct 578 CGAGATGGACGACCG---ATGATCATCTCCCGGCT-GGAC-CAACTCACCGGTATGATTG 632
Query 649 GCTGGTGTACGACGCCGTGATCGACGACGACAATTCCACGGTGGTTTTTGTCAAGGGGCT 708
|||||| |||||||||||||||||| |||| || || |||||||||||||||||||||||
Sbjct 633 GCTGGTTTACGACGCCGTGATCGACTACGATAACTCTACGGTGGTTTTTGTCAAGGGGCT 692
Query 709 TAATCTACGGCCAGGAAAG-GTTGCTGACGTGTCGAGATATGAGTGCGTGTACGGTTGGG 767
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TAATCTACGGCCAGG-AAGAGTTGCTGACGTGTCGAGATATGAGTGCGTGTACGGTTGGG 751
Query 768 ATTTTAC-AAAGCCCAAACTTTTGCTTAGAGCACAAGTTATCTCTGCGGCCCAAGAGATC 826
|||| | ||| | || | || | ||| || | || ||| ||||||| || ||||||
Sbjct 752 ATTTCGCGAAA-CATAATCGGTTAATAAGATCAGATGTCATCACTGCGGCTCAGGAGATC 810
Query 827 GTACGATGCAAAACGCCACTAACAGTATTAGACGGCCCAAGAA-AGGCCCAATCTCAACC 885
||||| || | ||| || || | || ||||||||||||| || ||||| | ||
Sbjct 811 GTACGGTGTAGAACACCGTTAGCTGTGTTAGACGGCCCAA-AAGCGGCCC---GTGGGCC 866
Query 886 GGTGAAAGTTTCTGTGAGGATTAAAGGAAGTA--GG-ATGCTTCCTTCTGTTGC-CAACC 941
|| ||||| || || || || |||||| | | || |||||||||||| | || | | |
Sbjct 867 TGTTAAAGTCTCGGTTAGAATCAAAGGAGGAACCGGAATGCTTCCTTCTATCGCTC-AGC 925
Query 942 CAATTAAAC-G-TCCGGGTCGGGTCAAAGACACGAAAACGTTTGAGACGTGTGTTTGTAC 999
| || | | || | | | || | |||| | ||| | | ||| ||||| ||
Sbjct 926 CGGTT---CGGATCATTAACCCG-CCGCGA-AAGAAACCCTTTCAAATGTGCGTTTGCAC 980
Query 1000 CATGACGCGAAACGCAGCAAAC-GTTTTGAGAGAATGGGTAATGTACCACGCCGGAATCG 1058
|||||| ||||||||||| | ||||||||||| ||||| ||||| ||||||||||| |
Sbjct 981 CATGACCCGAAACGCAGC-CGCGGTTTTGAGAGAGTGGGTGATGTATCACGCCGGAATTG 1039
Query 1059 GCGTTCAACGGTGGTTCATCTACGACAACAACAGCGACGACGACATTGTTTCCGAGATCA 1118
|||||||||||||||||||||| |||||||||||||||||||| || | ||||||||
Sbjct 1040 GCGTTCAACGGTGGTTCATCTATGACAACAACAGCGACGACGATATCATCGCCGAGATCG 1099
Query 1119 AGAATCTAGAAA-ATCGCGGTTACAACATCTCGAGACATTTTTGGCCGTGGATAAAAACT 1177
||||||| |||| | || |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1100 AGAATCTCGAAAGA-CGTGGTTACAACATCTCTAGACATTTCTGGCCGTGGATTAAAACT 1158
Query 1178 CAAGAAGCAGGATTCGCCAATTGCGCGATTCGAGCAAAGAGCGATTGCGATTGGGTTGCG 1237
|| ||||| |||||| | ||||||||||| || ||||||||||||||||||||| |||||
Sbjct 1159 CAGGAAGCCGGATTCTCTAATTGCGCGATCCGTGCAAAGAGCGATTGCGATTGGATTGCG 1218
Query 1238 TTTATCGACGTCGACGAGTTCTTCTACATCTCTTCTGGTCAAAC-CTTAACCGACGTAAT 1296
|||||||||||||||||||||||||||||| | || ||| |||| || ||| ||| ||
Sbjct 1219 TTTATCGACGTCGACGAGTTCTTCTACATCCCATCCGGTGAAACTCT-AACTTCCGTCAT 1277
Query 1297 CAGAAATCACACAAC-ATCGTCCGGCGAGATTGGTGAAATTCGAACGCCGTGTCACAGTT 1355
||||||| ||||||| | || | | | || |||||||||||||| || || |||||||
Sbjct 1278 CAGAAATTACACAACCACCGACT--C-A-ATCGGTGAAATTCGAACACCTTGCCACAGTT 1333
Query 1356 TCGGACCGTCGGGACTTAGCGATC-CA-CCG-GGCGGTGGAGTCACGGCGGCTTATACGT 1412
|||| || ||||| || | |||| | || || | |||||||||| ||| || || |
Sbjct 1334 TCGGGCCATCGGGT-TT-GAGATCTCGGCCTCGGAG-TGGAGTCACGTCGGGATACACTT 1390
Query 1413 GTCGTATGGCGTTACCGGAGAGACACAAGAGCATAATCAGACCGGAATCGCTAAACGCGA 1472
| ||| ||| |||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 1391 GCCGTGTGGTGTTACCGGAGAGACACAAGAGCATAATCCGGCCGGAAGCGATGAACGCGA 1450
Query 1473 CGCTGATAAACGTGGTGCATCATTTTCACTTAAAAGAAGGATTCGCGTTCGCTGACGTGG 1532
||||||||||||| || || ||||||||| | | ||| |||||| |||| |||||| |||
Sbjct 1451 CGCTGATAAACGTTGTTCACCATTTTCACCTCAGAGATGGATTCACGTTTGCTGACATGG 1510
Query 1533 ATAAGGGTATGATGGTAATTAACCACTATAAATATCAGGTTTGGGAGATATTT-AAAGAG 1591
|||||| ||| |||||||| |||||||| || |||||||| |||||| | ||| ||||||
Sbjct 1511 ATAAGGATATAATGGTAATCAACCACTACAAGTATCAGGTGTGGGAGGT-TTTCAAAGAG 1569
Query 1592 AAGTTTAAAAGGAGAGTGGCGACGTACGTGGCGGATTGGCAAAACGAAGAGAATGTCGGG 1651
|||||| | || |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1570 AAGTTTTATCGGCGAGTCGCGACGTACGTAGCGGATTGGCAAAACGAAGAGAATGTCGGG 1629
Query 1652 TCGAA-AGATCGGGCCCCCGGATTAGGGACCCGACCCGTTGAACCGTCTGATTGGGCTGA 1710
|| || |||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1630 TC-AAGAGATCGAGCACCCGGTTTAGGAACCCGACCCGTTGAACCATCTGATTGGGCTGA 1688
Query 1711 GAGGTTTTGTGAAGTGAGA-GATATTGGGCTTAGGGATTGGGTGTTGGATAATTTCAGGG 1769
||| || ||||| || | | |||| |||||||| ||| ||||| || || |||| |
Sbjct 1689 GAGATTCTGTGAGGTTA-ATGATACGGGGCTTAGAGATCAAGTGTTTGAGAAGTTCAAAG 1747
Query 1770 ACCGTAAAACGCAGCGTTTAGTATGGGA 1797
|| ||||||||||||||||| |||||
Sbjct 1748 ACAAAAAAACGCAGCGTTTAGTTTGGGA 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97891062750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5