BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493912
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40700.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 1334 0.0
AT3G27350.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 279 3e-74
AT3G01710.1 | Symbols: | TPX2 (targeting protein for Xklp2) pr... 87.9 2e-16
> AT5G40700.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27350.1);
Has 475 Blast hits to 414 proteins in 93 species: Archae -
0; Bacteria - 43; Metazoa - 127; Fungi - 17; Plants - 143;
Viruses - 7; Other Eukaryotes - 138 (source: NCBI BLink). |
chr5:16291890-16293512 REVERSE LENGTH=1138
Length=1138
Score = 1334 bits (722), Expect = 0.0
Identities = 945/1046 (90%), Gaps = 41/1046 (4%)
Strand=Plus/Plus
Query 1 CTTCGATTTTTATTTATTTCATTTTGAGATTCCAACGAAGAAATTTTCGATTTTGAGGTT 60
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 1 CTTCGATTTTTATTTATTTCCTTTTGAGATTCCAACGAAGAAGTTCTCGATTTTGAGGTT 60
Query 61 TAGTTG-CAATGGGTGAATCTGCTGTTCTATTTCATTCCTATTCGTTCTCTCCTCCTCCT 119
| || | |||||| ||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 61 TTGTGGCCAATGGCTGAATCTGCTGTTCTGTTTCATTCCTATTCGTTCGCAGCTCCTCCT 120
Query 120 TCTCGTAATGAATCTCTTGAGGATAATCCGATTCATGCGCTTAGTCAATCAGTTTCATTT 179
|||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||
Sbjct 121 TCTCGTAATGAATCTCATGAGGATAATACGATGCATGCGCTTAGTCAATCAGTTTCATTT 180
Query 180 GGTAGGTTCGTGACAGAGAATCTTGAATGGGGAAAATGGTCAAGTTTTTCGCATAAGAAG 239
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GGTAGATTCATGACAGAGAATCTTGAATGGGGGAAATGGTCAAGTTTTTCGCATAAGAAG 240
Query 240 TATGTCGATGAAGCCGAGAAATTCTCTCAGTCTGAATCTGTTGCTCAGAAGAAAGCTTTC 299
|||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 241 TATGTCGATGAAGCTGAGAAGTTCTCTCAGCCTGGATCTGTTGCTCAGAAGAAAGCTTTC 300
Query 300 TTTGAAGCTCATTACAAGAAAATAGCTGAAGCCAAGAAAGCAAAAGCTTCAGATGAATCA 359
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 301 TTTGAAGCTCATTACAAGAAAATAGCTGAAGCAAAGAAAGCAAAAGCTTCAGATCAATCA 360
Query 360 TCTGACACTAAGCAAGAAGAACAAGAACCAGAAAGTGTTGCGGTGCTGCTTAACACTTTG 419
||||| || | | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 TCTGATTCTGA-C-CCTA-AACAAGAACCAGAAAGTGTTGCGGTGTTGCTTAACACTTTG 417
Query 420 GAGACATTGACTAAGGATGAGGTTAAGGAAGAAGA--GAG-TG--A-TGA---A-AC-TG 468
||||||||||||||||||||||||||||||||||| | | || | ||| | | ||
Sbjct 418 GAGACATTGACTAAGGATGAGGTTAAGGAAGAAGAGGGTGATGAAACTGAGTTAGTCTTG 477
Query 469 AGT--TAGTCATGAG-T--CG-T-AG---T------GA--A-GAGCCCGGAAGAA-AAAG 508
||| |||| | ||| | | | || | || | ||||| | ||||| |||
Sbjct 478 AGTAGTAGTGAAGAGTTGGTGTTGAGTATTGAGAAAGATGATGAGCCAGTAAGAACAAA- 536
Query 509 TGTTGCGGTTTTGGAACAAGAAGACGGTGGTTTGCAGGTTGTTCATGATGATAAAGAGAA 568
|||||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 537 TGTTGCGGTTTTGGAACAAGAAGA---TGATTTGCAGGTTATTCATGATGATAAAGAGAA 593
Query 569 AGAGAATCACTCagaggatggagagttgttgaagaagaattgtttcgatggagaaaaaga 628
||| |||||||| ||||||||||||||| ||||||||| |||||||| |||||| |||||
Sbjct 594 AGATAATCACTCTGAGGATGGAGAGTTGGTGAAGAAGAGTTGTTTCGTTGGAGAGAAAGA 653
Query 629 agaagagagaagaTCCGTTACCAACAACTCATCGGTGGTTAGATTGTCTATGGAGAAATC 688
||||||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 654 AGAAGAGAGAAAATCCGTAACCAAGAACTCATCGGTGGTTAGATTGTCTATAGAGAAATC 713
Query 689 AGCAACTTCTGAAACTCGGGACAATGCAATGGAGCTTGTTTTCTCACTGAAAATAAGTGG 748
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 714 AGCAACTTCTGAAACTCCGGACAAAGCAATGGAGCTTGTTTTCTCACTGAAAATAAGTGG 773
Query 749 AAAACCGATAACTCATAGTTCGTTGAAGAAAAACGAAAAACCAGTTCGTCCCAGATTCGG 808
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 774 AAAACCGATAACTCATAGTTCGTTGACGAAAAGCGAAAAACCAGTTCGTCCTAGATTCGG 833
Query 809 TTTCTTGAGCTGTTTGATGGGAAACACTAAAACTCAAGATCAAAACCCGGCTATGAAGAA 868
||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||||
Sbjct 834 TTTCTTGAGCTGTTTGATGGGAAACACTAAAACTCAAGATCAAAAGCTGACTATAAAGAA 893
Query 869 GCAGAGAAAGACGAGTAAGAAACCATTTCTATGTCTTTGCTTCAAACCTGAGATGGCTGG 928
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 894 GCAGAGAAAGACGAGTAAGAAACCATTTCTATGTCTTTGCTTCAAACCCGAGATGGCTGG 953
Query 929 GGAAACAGAAGC-GGCAAGACAAAGGTAGTACACCAAAACACCGAAGAGGAATCTCTGAA 987
|||||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 954 GGAAACAGAAGCAGG-AAGACAAAGGTAGAACACCAAAACACAGAAGAGGAATCTCTGAA 1012
Query 988 AACACTTGCAAGTAGAAAGATTGATC 1013
||||||||||||||||||||||||||
Sbjct 1013 AACACTTGCAAGTAGAAAGATTGATC 1038
> AT3G27350.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G40700.1). | chr3:10125659-10127992
FORWARD LENGTH=1635
Length=1635
Score = 279 bits (151), Expect = 3e-74
Identities = 252/300 (84%), Gaps = 9/300 (3%)
Strand=Plus/Plus
Query 44 TTTTCGATTTTGAGGTTTAGTTGCAATGGGTGAATCTGCTGTTCTATTTCATTCCTATTC 103
|||| ||| |||||| || | | ||||||||||||||| ||||| ||||||| |||||
Sbjct 558 TTTTTGATCTTGAGG-TT-G-TAAAATGGGTGAATCTGCAGTTCTGGTTCATTCTTATTC 614
Query 104 GTTCTCTCCTCCTCCTT-CTCGTAATGAATCTCTTGAGGATAATCCGATTCATGCGCTT- 161
||| | ||||| || ||||||| || |||| |||||| ||| ||||||||||| ||
Sbjct 615 CTTCGCAGCTCCT-ATTACTCGTAACGATTCTCATGAGGAGAATACGATTCATGCG-TTA 672
Query 162 AGTCAATCAGTTTCATTTGGTAGGTTCGTGACAGAGAATCTTGAATGGGGAAAATGGTCA 221
||||||||| | |||||||| | ||| ||||||||||||| |||||||| |||||||||
Sbjct 673 AGTCAATCAATATCATTTGGGAAATTCATGACAGAGAATCTAGAATGGGGGAAATGGTCA 732
Query 222 AGTTTTTCGCATAAGAAGTATGTCGATGAAGCCGAGAAATTCTCTCAGT-CTGAATCTGT 280
|| ||||| ||||| |||||||| || ||||| ||||||| ||| | || ||| ||||||
Sbjct 733 AGCTTTTCACATAAAAAGTATGTTGAAGAAGCAGAGAAATACTCAC-GTCCTGGATCTGT 791
Query 281 TGCTCAGAAGAAAGCTTTCTTTGAAGCTCATTACAAGAAAATAGCTGAAGCCAAGAAAGC 340
||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 792 TGCACAGAAAAAAGCTTTCTTTGAAGCTCATTACAAGAGAATAGCTGAAGCTAAGAAAGC 851
> AT3G01710.1 | Symbols: | TPX2 (targeting protein for Xklp2)
protein family | chr3:259639-261840 REVERSE LENGTH=1591
Length=1591
Score = 87.9 bits (47), Expect = 2e-16
Identities = 110/139 (79%), Gaps = 9/139 (6%)
Strand=Plus/Plus
Query 195 GAGAATCTTGAATGGGGA-AAATGGTCAAG-TTTTTCGCATA-AGAA---GTATGTCGAT 248
||||| ||||| | |||| |||||||| | ||| || || | |||| || || | |
Sbjct 208 GAGAAACTTGACT-GGGAGAAATGGTC-TGCTTTCTC-CACACAGAACCCTTACGTGGCT 264
Query 249 GAAGCCGAGAAATTCTCTCAGTCTGAATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCT 308
|| || |||| || |||| || | | ||||||||||||||||||||||||||||||||||
Sbjct 265 GAGGCAGAGAGATACTCTAAGCCCGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCT 324
Query 309 CATTACAAGAAAATAGCTG 327
|| ||||||||| | ||||
Sbjct 325 CACTACAAGAAAGTCGCTG 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5