BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493913
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: EF-Hand 1... 1351 0.0
> AT5G40690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: EF-Hand
1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G41730.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:16290711-16291583 FORWARD LENGTH=873
Length=873
Score = 1351 bits (731), Expect = 0.0
Identities = 835/884 (94%), Gaps = 12/884 (1%)
Strand=Plus/Plus
Query 1 ACATCTTTCTTCTTCCttttttttttGTGTAGTTCAGGTCTCATTGATCAACGGCTAAGA 60
|||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||| |||||
Sbjct 1 ACATCTTTCTTCTTCCTTTTTTTTGTGTGTGGTTAAGGTCTCATCGATCAACGGATAAGA 60
Query 61 TGAAGCGAGAAGGCAAACAACACGGTATGGTCAGAACTTACCGGATTCTGCCTCCGTCGC 120
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 61 TGAAGCGTGAAGGCAAACAACACGGTATGGTGAGGACTTACCGGATTCTGCCTCCGTCGC 120
Query 121 TGAATCCAAGGCCGGAATCGAAGTTGGTCAACCCTTTGACTTCACGGCCAACCGCTGGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAATCCAAGGCCGGAATCGAAGTTGGTCAACCCTTTGACTTCACGGCCAACCGCTGGAT 180
Query 181 TGTTTACCAAAGTGACATCAAAGCCGACCAATCACTCGAAATTCACCGGAAAATGTGGTC 240
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TATTTACCAAAGTGACATCAAAGCCGACCAATCACTCGAAATTCACCGGGAAATGTGGTC 240
Query 241 AAGCAAGGTGCCTTGATTGTCATATGCATCCGATCACCAAATCCAAAGCCAAGACTAAAG 300
|||||||||||||||| || |||||||| ||| |||||||||| ||||||||||||||||
Sbjct 241 AAGCAAGGTGCCTTGACTGCCATATGCACCCGGTCACCAAATCTAAAGCCAAGACTAAAG 300
Query 301 GCTCTTCTAAGGTGAGATCAAATGATGTCACCTACAAGATGCTGACTTGGCAGGTTGCTG 360
||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 301 GCTCTTCAAAGGTGAGAACAAATGATGTCACCTATAAGATGCTGACTTGGCAGGTCGCTG 360
Query 361 CGGGTGGGCCTAGACCCGGTTTGAAGCTTTCCGGGTTCTCGGCTACCGGGATACTtgatc 420
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 CCGGTGGGCCTAGACCCGGTTTGAAGCTTTCCGGGTTCTCGGCTACCGGAATACTTGATC 420
Query 421 ttatgtctgatgattatggttatgatcatgattatgaagatgatgaagaagatgaagaag 480
||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||
Sbjct 421 TTATGTCTGATGATTATGGTTATGATCATGATTATGATTATGATGAAGAA-A--ATGAAG 477
Query 481 aagaagaaAACAGAGCAAGTGTTGTTGAAGAAATTGTGAAAATACAGAGTAGtgatgatg 540
||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 478 AAGAAGAAAACAGAGGGAGTGTTGTAGAAGAAGTTGTGAATATACAGAGTAGTGATGATG 537
Query 541 atggtgaaacagaagaagatgggtcacatgatgatgatgatgatgatgatgatactgatg 600
|||||||||||||||||| |||| | | | ||||||||||||||||||| ||||
Sbjct 538 GTGGTGAAACAGAAGAAGAAGGGT--C---A--A--ATGATGATGATGATGATACAGATG 588
Query 601 atgatggaaggatgagtttttgtgatgtggggatgatgatgatgatggatcatgtggaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATGATGGAAGGATGAGTTTTTGTGATGTGGGGATGATGATGATGATGGATCATGTGGAAG 648
Query 661 aatatgatgaaggatggTATTTGGTTGAAGAAATGATGACTTAATTGATCTGGCTGATTA 720
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 649 AATATGATGAAGGATGGTATTTGGTTGAAGAAATGATGACTTAACTGATCTCTCTGATTA 708
Query 721 TCCCCCAATAATTGTCTTTCCTTTTGCTTTTGTAAATTTTATCATTTTTAATAACTTGGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TCCCCCAATAATTGTCTTTCCTTTTGCTTTTGTAAATTTTATCATTTTTAATAACTTGGG 768
Query 781 GGAATGATTGATTATATCTATGTAAATGTGATTTGATTCTTAAATCAAAAACTATGATTT 840
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GGAATGAATGATTATTTCTATGTAAATGTGATTTGATTCTTAAATCAAAAACTATGATTT 828
Query 841 ATAATTGTAATTTATGTAAAGTTGAAACCTTTTCTCAACAACTC 884
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ATAATTGTAATTTATGTAAAGTTGAAACCTTTTCTCAACAACTC 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43151132273
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5