BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493915
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40670.1 | Symbols: | PQ-loop repeat family protein / trans... 1635 0.0
> AT5G40670.1 | Symbols: | PQ-loop repeat family protein / transmembrane
family protein | chr5:16285711-16287793 FORWARD LENGTH=1272
Length=1272
Score = 1635 bits (885), Expect = 0.0
Identities = 1110/1208 (92%), Gaps = 57/1208 (5%)
Strand=Plus/Plus
Query 1 AAAATCACCTGCTTTACCCATCACGCTAAGATCGTGGAATCTTATATCACTAGACTCT-C 59
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 23 AAAATCACCTGCTTCACCCATCACGCTAAGATCGTGGAATCTTATATCACTAGACTCTCC 82
Query 60 CAGATCATGACACGTCATCA---TCATCTTGAGACCCATAATTTTTTGAAACTGTTTTAT 116
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 83 CAGATCATGACACGTCATCATCTTCATCATGAGACCCATAATTTTTTGAAACTGTTTTAT 142
Query 117 TTCATTTCCC----A-A-----TG-----A----TATTTAAGGCTCTTCATAAAATCTCC 157
|||| | ||| | | || | | |||||||||||||| |||||||||
Sbjct 143 TTCACTCCCCAATAATATTTTCTGCTTTTAGCTCTTTTTAAGGCTCTTCA-AAAATCTCC 201
Query 158 GTCAACGTCACA-AACAAAACTTGGAGAAATCGAAAAGA-GATC--GAT--A--AAAATG 209
||||||||| | ||||||| |||||||||||||| ||| |||| ||| | ||||||
Sbjct 202 GTCAACGTC-GAGAACAAAATTTGGAGAAATCGAACAGACGATCGAGATCGAGGAAAATG 260
Query 210 GCGTCGTGGAATTCGATTCCGCTAGAGATTTCGTATGAAATCGTTGGATGGATCGCTTTT 269
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||
Sbjct 261 GCGTCGTGGAATTCGATTCCGCTGGAGATCTCGTACGAAATCGTTGGATGGATCGCGTTT 320
Query 270 GCTTCGTGGTCAATTAGCTTTTACCCACAATTGATTTTGAATTTCCGTAGGAAAAGTGTT 329
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 321 GCTTCGTGGTCAATTAGCTTTTACCCACAGCTGATTTTGAATTTCCGTAGGAGAAGTGTT 380
Query 330 GTTGGATTGAACTTCGACTTCGTGATGTTGAATTTGACAAAACACTCGTCGTATATGATC 389
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 381 GTTGGATTGAACTTCGACTTCGTGATGTTGAATTTGACAAAGCACTCGTCGTATATGATC 440
Query 390 TACAATGTCTGCCTCTACTTTAGTCCTGTTATTCAAAAGCAGTACTTTGACACTTATGGC 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TACAATGTCTGCCTCTACTTTAGTCCTGTTATTCAAAAGCAGTACTTTGACACTTATGGC 500
Query 450 GATAAAGAGATGATACCTGTGGCTGCGAATGATGTTGCATTCTCAATCCATGCAGTTGTA 509
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 501 GATAAAGAGATGATACCTGTGGCTGCAAATGATGTTGCATTCTCGATCCATGCAGTTGTA 560
Query 510 ATGACAGCTGTTACACTGTTCCAGATCTTTATCTATGAACGTGGACCTCAAAAAGTATCT 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATGACAGCTGTTACACTGTTCCAGATCTTTATCTATGAACGTGGACCTCAAAAAGTATCC 620
Query 570 AGACTTGCTATAGGTATTGTGGTTGTTGTGTGGGCATTTGCAGCTATCTGTTTCTTCATA 629
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 621 AGACTTGCTATAGGTATTGTGGTTGTTGTGTGGGGATTTGCAGCTATCTGTTTCTTCATA 680
Query 630 GCATTACCTACACACTCTTGGCTATGGCTCATCTCGATCTTCAATTCAATTCAGGTCTTC 689
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 681 GCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTTCAATTCGATTCAGGTCTTC 740
Query 690 ATGACATGCGTCAAGTACATTCCACAGGCAAAGATGAACTTCACTAGAAAGAGCACAGTC 749
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 741 ATGACATGCGTCAAGTACATCCCACAGGCAAAGATGAACTTCACTAGGAAGAGCACAGTC 800
Query 750 GGATGGAGCATCGGGAATATTCTTCTTGATTTTACTGGAGGACTTGCTAATTATCTGCAA 809
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 801 GGGTGGAGCATCGGGAATATTCTTCTCGATTTTACTGGAGGACTTGCTAACTATCTGCAA 860
Query 810 ATGGTTATACAATCTATTGACCAAAATTCTTGGAAGAATTTCTATGGGAACATTGGAAAG 869
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 861 ATGGTTATACAATCTATTGACCAAAATTCTTGGAAGAATTTCTATGGGAACATGGGAAAG 920
Query 870 ACTCTTCTATCACTTATATCAATATTTTTCGACATCCTCTTCATGTTTCAACACTATGTG 929
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 ACTCTTCTCTCACTTATATCAATATTTTTCGACATCCTCTTCATGTTTCAACACTATGTG 980
Query 930 TTATACCCAGAGAAGAAAGCCTCAAAATCTCTGGAAACTGGTGAGGAATCGAACGAACCA 989
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 981 TTATACCCAGAGAAGAAAGTCTCAAAATCTCCGGAAACTGGTGAGGAATCGAACGAACCA 1040
Query 990 CTCATTGATTCTTCTCATGAACATGTTTAAAGATCAGATTCTCTGGAGAATATCAAAGTC 1049
||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1041 CTCATTGATTCTTCTCATGAACATGTTTAAAGATCAGATTCTCA--AGA--------GTC 1090
Query 1050 ATTAGTTTCAGCCTTCCCACTGTATATGTTTAAATCACAAAAAGGTACAAGAT-T-ATTA 1107
|||||||||||| ||||||||||||||||||| ||||||||||||||||| || | | |
Sbjct 1091 ATTAGTTTCAGCGTTCCCACTGTATATGTTTATATCACAAAAAGGTACAA-ATGTGAGAA 1149
Query 1108 -TCC-CATGTTATTGTCTTAATATCAGTTTAATGTATCA--T---T-ATCACAGAAACAA 1159
|| || | |||||| |||||||||| |||||||||| | | ||||||||||||
Sbjct 1150 CTCTTCA-G--ATTGTCGTAATATCAGTCTAATGTATCAAATCAATTATCACAGAAACAG 1206
Query 1160 CAAATGTA 1167
||||||||
Sbjct 1207 CAAATGTA 1214
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1172 TATATTTTAAGAAACAAGATGAAAGTTAA 1200
|||||||||||||||||||||||||||||
Sbjct 1238 TATATTTTAAGAAACAAGATGAAAGTTAA 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5