BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493916
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40660.1 | Symbols: | ATP12 protein-related | chr5:16283508... 1626 0.0
> AT5G40660.1 | Symbols: | ATP12 protein-related | chr5:16283508-16285326
REVERSE LENGTH=1285
Length=1285
Score = 1626 bits (880), Expect = 0.0
Identities = 1119/1228 (91%), Gaps = 41/1228 (3%)
Strand=Plus/Plus
Query 44 TTGCGACGTCGTTTAGGCTTGGATCTGACGATCTGTG-GATCTAAAACCCTAAGCAAGGA 102
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 72 TTGCGACGTCGTTTAGGCTTGGATCTGACGATCTATGTGATCTAAAACCCTAAGCAAGGA 131
Query 103 GGTGAGTGAGGTCCCATTTTCGTCACCGGAGAGGGAGGATTAATGGCGGCGATGTTAATC 162
| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 ---G-GT----CCCCATTTTCGTCACCGGAGAGGGAGGATTAATGGCGGCGATGTTAATC 183
Query 163 GGAAGAGCTTTTAAATCAGCTAGAAACTTTAACCTGGCCGTTCGTGCTCGATCCTTATGT 222
|||||||||||||| ||||| ||||||| ||| || || |||||||| |||||||||||
Sbjct 184 GGAAGAGCTTTTAAGTCAGCGAGAAACTCTAATCTTGCTATTCGTGCTAGATCCTTATGT 243
Query 223 ACGACGTCTGTCGCTCGTCAACCCGATTCCGATACTCAGCCATCGGAATCTTCGTCTTCG 282
||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 244 ACGACATCTGCCGCTCGTCAACCCGATTCCGATACTCAGCCATCGGAATCTTCG---TCG 300
Query 283 TCGTCTTCATTCACATTCGAGAAGGGAAATGAGAAACCTATCTTAGTGAAAGCTCCGAAC 342
||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 301 TCG------TTCACATTCGAGAAGGAAAATGAGAAACCCATCTTAGTGAAAGCTCCGAAC 354
Query 343 ACTCGCCGGAATAATGAATCGGATTCAGTGACGATGCCGACGTCTTTTATGACTGGTTCG 402
|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 355 TCTCGCCGGAAAAACGAATCGGATTCAGTGACGATGCCGACGTCTTTCATGACTGGTTCG 414
Query 403 ATTGTTGGGAAGAGGTTTTACAAGAAAGTGACGACGAGAGAAGCTGATGATGGAAATGGA 462
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 415 ATCGTAGGGAAGAGGTTTTACAAGAAAGTGACGACTAGAGAAGCTGATGATGGAAATGGA 474
Query 463 TGGACTGTGATGCTCGATTATAGAACCCTTAAAACCCCTTCCAAAAGACCTCTCAAGCTT 522
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 TGGACTGTGATGCTTGATTATAGAACCCTTAAAACCCCTTCGAAAAGACCTCTCAAGCTT 534
Query 523 CGTTCTTTGGCACTTGCTAAGGCCATTGCAGCTGAATGGGAGTATCAGCTAACAGAAGGG 582
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 535 CGTTCTTTGGCACTTGCTAAGGCCATTGCTGCTGAGTGGGAGTATCAGCTAACAGAAGGG 594
Query 583 ATCAGACCGTTCACTATGCCGCTAATGAGACTAGCATGTACTGCACTTGAAAGAGTTCCT 642
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 595 ATCAGACCATTCACAATGCCGCTTATGAGACTAGCATGTACTGCACTTGAAAGAGTTCCT 654
Query 643 CTCACGCGTTCAAAGATCATCGAACATCTATCGAGAAAGTTACATCAAGATCTTGTCTTT 702
|| ||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||
Sbjct 655 CTTACGCGTTCAAAGATCATAGAACATTTATCGAGAAAGATACATCAAGATCTCGTCTTT 714
Query 703 TTCCGAGCGCCTGAAGATAATGATCTAACTAGTGACGTCCATGAAATTCAGGTAGAGAGG 762
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 TTCCGAGCACCTGAAGATAATGATCTAACTAGTGACGTCCATGATATTCAGGTAGAGAGT 774
Query 763 ATTGATCCTCTACTTGAGTGGGTAGAATCAGAGTTTGGGGTAAAACC-AAATTTGTATTC 821
||||||||||||||||||||| |||| ||||||||| |||| ||||| ||| |||||||
Sbjct 775 ATTGATCCTCTACTTGAGTGGATAGAGTCAGAGTTTCGGGTCAAACCGAAA-GTGTATTC 833
Query 822 TAGTATTTTCGGGGGTAAACAAGACGACAAGCTAGTGAAAGCAGTAGAAGATCTGCTCAA 881
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 834 TAGCATCTTCGGGGGTAAACAAGACGACAAGCTAGTGAAAGCAGTAGAAGAACTGCTCAA 893
Query 882 GAAGACAAATGATGGTGAACTTGCAAGCATTGATGCACTCCAAGCATCAGCTCACTCGAT 941
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 894 GAAAACGAATGATGGTGAACTCGCAAGCATTGATGCACTCCAAGCATCAGCTCACTCTAT 953
Query 942 AGTAATCGCCCTCTGCATCTTCTGTGGGAAGCTCCAGATCGATGATGCAATTAAATTGAT 1001
||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 954 AGTAATCGCCCTCGGTATCTTCTGTGGGAAACTCCAGATCGATGATGCAATCAAATTGAT 1013
Query 1002 TAGACTTGAAGAAGATTTACAGGTGGACAAATGGGGACTAGTCGAAGGCGGGCACGACAT 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 TAGACTTGAAGAAGATTTACAGGTGGACAAATGGGGACTAGTCGAAGGCGGGCATGACAT 1073
Query 1062 TGATATTGCTGATCTAAAAGTTCAGATATCATCAGCTACAGTGTTTCTTGCTCTATCCCG 1121
|||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1074 TGATGTTGCTGATCTCAAAGTTCAGATCTCATCAGCTACAGTGTTTCTTGCTCTATCCCG 1133
Query 1122 TGAAAACTGATCATCAGTCTCTCTTTTGTGCTCAACACATTaaaaaaaaa----a---GA 1174
|||||||||||||| |||||||| ||| | ||||||||||||||||| || | |
Sbjct 1134 TGAAAACTGATCATTAGTCTCTCATTT-TCCTCAACACATTAAAAAACAAGCTTATCTGT 1192
Query 1175 ----ACA--AGCTTATCTG-TTT----GTAG-AATAGGTAAGTGTAAACATTTTTCTCTC 1222
| | || |||| | ||| || | || ||||| |||||||||||||||||||
Sbjct 1193 TTGTAGATTAG-TTATTTACTTTCCAAGTTGCAAGAGGTATGTGTAAACATTTTTCTCTC 1251
Query 1223 CTATTCACCAATAAAGCAAAACTCGAAA 1250
|||||||||||||||||||||||||||
Sbjct 1252 TTATTCACCAATAAAGCAAAACTCGAAA 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5