BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493917
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40650.1 | Symbols: SDH2-2 | succinate dehydrogenase 2-2 | c... 1744 0.0
AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | c... 977 0.0
> AT5G40650.1 | Symbols: SDH2-2 | succinate dehydrogenase 2-2 |
chr5:16281404-16283527 FORWARD LENGTH=1132
Length=1132
Score = 1744 bits (944), Expect = 0.0
Identities = 1003/1031 (97%), Gaps = 5/1031 (0%)
Strand=Plus/Plus
Query 1 ACTATTaaaaaaaC-ATTCTCATTTCATTTGCTCTCTTCTCCGAGAAAAATGACGTTTGG 59
|||||||||||||| ||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 12 ACTATTAAAAAAACAATT-TCATTTCATTTGCTCTCTTCTCCGAG-AAAATGGCGTTTGG 69
Query 60 TTTGATCGGAAGAGTTGTTGGAACCAAATCGTCACGGTTATCCACGGCGGCGCGATTGAT 119
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 70 TTTGATCGGAAGAGTTGTTGGAACCAAATCATCACGATTATCCACGGCGGCGCGATTGAT 129
Query 120 TCCGGCGCGATGGACATCAACAGGATCAGAAGCACAATCGAAAGCTTCAACCGGCGGCGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCCGGCGCGATGGACATCAACAGGATCAGAAGCACAATCGAAAGCTTCAACCGGCGGCGG 189
Query 180 AGGAGCGAGTTTGAAGACGTTTCAGATCTATCGATGGAATCCAGATAATCCTGGAAAGCC 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AGGAGCGAGTCTGAAGACGTTTCAGATCTATCGATGGAATCCAGATAATCCTGGAAAGCC 249
Query 240 TGAGCTTCAAGATTACCAAATCGATCTCAAGGATTGTGGTCCAATGGTTCTAGATGCTTT 299
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AGAGCTTCAAGATTACAAAATCGATCTCAAGGATTGTGGTCCAATGGTTCTAGATGCTTT 309
Query 300 GATTAAGATTAAGAACGAGATGGATCCATCTCTCACTTTCCGTCGCTCTTGCCGTGAAGG 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 310 GATTAAGATTAAGAACGAGATGGATCCATCGCTCACTTTCCGTCGCTCTTGCCGTGAAGG 369
Query 360 TATTTGTGGTTCGTGTGCTATGAACATTGATGGATGTAATGGTCTTGCTTGTTTAACGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TATTTGTGGTTCGTGTGCTATGAACATTGATGGATGTAATGGTCTTGCTTGTTTAACGAA 429
Query 420 GATTGAATCTGGATCTAAAGAGACGACGATTACGCCGTTGCCTCATATGTTTGTGATTAA 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 430 GATTGAATCTGGATCTAAAGAGACGACGATTACGCCGTTGCCGCATATGTTTGTGATTAA 489
Query 480 GGATTTGGTTGTGGATATGACGAATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GGATTTGGTTGTGGATATGACGAATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTT 549
Query 540 GAAGAGGAAGAATCCAGCATCTGTTCCTGGGAAAGAGATTTTGCAGAGTAAGAAGGATAG 599
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 550 GAAGAGGAAGAATCCAGCATCTGTTCCTGGGAAAGAGATTTTACAGAGTAAGAAAGATAG 609
Query 600 AGCTAAGCTTGATGGAATGTATGAATGTATTCTCTGTGCTTGTTGTAGCACGTCTTGTCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 610 AGCTAAGCTTGATGGAATGTATGAATGTATTCTCTGTGCTTGTTGTAGCACGTCTTGCCC 669
Query 660 TAGCTATTGGTGGAACCCTGAGTCTTATCTTGGCCCAGCTGCTTTGCTTCATGCCAACAG 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 670 TAGCTATTGGTGGAACCCTGAGTCTTATCTTGGTCCAGCTGCTTTGCTTCATGCCAACAG 729
Query 720 GTGGATAAGCGATAGCCGAGATGAGTACACTAAGGAAAGACTTGAAGCCATTGACGATGA 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GTGGATAAGTGATAGCCGAGATGAGTACACTAAGGAAAGACTTGAAGCCATTGACGATGA 789
Query 780 GTTCAAGCTGTATCGATGCCACACAATTCTGAACTGTGCTCGTGCATGTCCAAAGGGATT 839
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 790 GTTCAAACTGTATCGATGCCACACAATTCTGAACTGTGCTCGTGCCTGTCCAAAGGGATT 849
Query 840 GAACCCAGGGAAACAGATTACACACATCAAGCAGCTTCAGAAATCTGGTTGAATAACAAA 899
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 850 GAACCCAGGGAAACAGATCACACACATCAAGCAGCTTCAGAAATCTGGTTGAACAACAAA 909
Query 900 TCAATCAGGCAGTACCTAATGGATTTTTGATGCTAATAATTTGCAAGAAACTCCAATTTT 959
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 910 TGAATCAGGCAGTACCTAATGGATTTTTGATTCTAATAATCTGCAAGAAACTCCAATTTT 969
Query 960 GGATTCATTCTTGTATTTGCTGTTACAACTATGAGAAT-AGATTATTTTGTGGTATATCT 1018
||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 970 GGATTCATTCTTGTATT-GCTGTCACAACTATCAGAATTAGATTATTTTGTGGTATATCT 1028
Query 1019 TGATGAAATTT 1029
||||||| |||
Sbjct 1029 TGATGAATTTT 1039
> AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 |
chr3:10129610-10132760 REVERSE LENGTH=2424
Length=2424
Score = 977 bits (529), Expect = 0.0
Identities = 749/855 (88%), Gaps = 16/855 (2%)
Strand=Plus/Plus
Query 36 TTCTCCGA-G--AAAAATGACGTTTGGTTTGATCGGAAGAGTT-GTTGGAACCAAATCGT 91
|||||||| | ||||||| ||| |||||||||||||||| || |||||||| ||| |||
Sbjct 72 TTCTCCGAGGAAAAAAATGGCGTCTGGTTTGATCGGAAGA-TTGGTTGGAACGAAACCGT 130
Query 92 C-ACGGTTATCCACGGCGGCGCGATTGATTCCGGCGCGATGGACATCAACAGGATCAGAA 150
| | ||| ||||||||||| | || ||||||||| ||||||| || |||||| | ||
Sbjct 131 CGA-AATTAGCCACGGCGGCGAGGTTAATTCCGGCGAGATGGACCTCTACAGGAGCGGAG 189
Query 151 GCACAATCGAAAGCTTCAACCGGCGGC-G--GAGGAGCGAGTTTGAAGACGTTTCAGATC 207
|| || | |||||||| | |||||| | ||||| ||| |||||||| |||||||||
Sbjct 190 GCGGAAACAAAAGCTTCCTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAGATC 249
Query 208 TATCGATGGAATCCAGATAATCCTGGAAAGCCTGAGCTTCAAGATTACCAAATCGATCTC 267
||||||||||||||||||||||| || ||||| ||||||||| ||||||| |||||||||
Sbjct 250 TATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTTCAAAATTACCAGATCGATCTC 309
Query 268 AAGGATTGTGGTCCAATGGT-TCTAGATGCTTTGATTAAGATTAAGAACGAGATGGATCC 326
|| ||||||||||||||||| | ||||||||||||||||||| || ||||| ||||||||
Sbjct 310 AAAGATTGTGGTCCAATGGTAT-TAGATGCTTTGATTAAGATCAAAAACGAAATGGATCC 368
Query 327 ATCTCTCACTTTCCGTCGCTCTTGCCGTGAAGGTATTTGTGGTTCGTGTGCTATGAACAT 386
|||||| ||||||||| | || ||||||||||| || |||||||| ||||||||||||||
Sbjct 369 ATCTCTTACTTTCCGTAGATCATGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAACAT 428
Query 387 TGATGGATGTAATGGTCTTGCTTGTTTAACGAAGATTGAATCTGGATCTA-AAGAGACGA 445
|||||||||||| || ||||||||||| || |||||| || || | | | |||||||
Sbjct 429 TGATGGATGTAACGGACTTGCTTGTTTGACAAAGATTCAAGATGAAGC-ATCGGAGACGA 487
Query 446 CGATTACGCCGTTGCCTCATATGTTTGTGATTAAGGATTTGGTTGTGGATATGACGAATT 505
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 488 CGATTACACCGTTGCCTCATATGTTTGTGATTAAGGATTTGGTTGTTGATATGACTAATT 547
Query 506 TTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAATCCAGCATCTGTTC 565
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 548 TTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTGTTC 607
Query 566 CTGGGAAAGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGAATGTATGAAT 625
||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 608 CTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAAT 667
Query 626 GTATTCTCTGTGCTTGTTGTAGCACGTCTTGTCCTAGCTATTGGTGGAACCCTGAGTCTT 685
||||||| ||||||||||||||||| ||||||||||| || |||||||| ||||||||||
Sbjct 668 GTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGTCTT 727
Query 686 ATCTTGGCCCAGCTGCTTTGCTTCATGCCAACAGGTGGATAAGCGATAGCCGAGATGAGT 745
| ||||| |||||||||||||| || || || |||||||||||||| || || |||||||
Sbjct 728 ACCTTGGTCCAGCTGCTTTGCTACACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGT 787
Query 746 ACACTAAGGAAAGACTTGAAGCCATTGACGATGAGTTCAAGCTGTATCGATGCCACACAA 805
||||||||||||||||||| || |||||||| ||||||||||| || || ||||| ||||
Sbjct 788 ACACTAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATACAA 847
Query 806 TTCT-GAACTGTGCTCGTGCATGTCCAAAGGGATTGAACCCAGGGAAACAGATTACACAC 864
| || ||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 848 T-CTTGAATTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATTACTCAC 906
Query 865 ATCAAGCAGCTTCAG 879
|||||||| ||||||
Sbjct 907 ATCAAGCAACTTCAG 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5