BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493918
Length=2184
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40640.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 3520 0.0
AT3G27390.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1009 0.0
AT5G40645.1 | Symbols: | RPM1-interacting protein 4 (RIN4) fam... 185 1e-45
> AT5G40640.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING:
7 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G27390.1); Has 104 Blast hits
to 102 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr5:16277042-16280424 FORWARD
LENGTH=2230
Length=2230
Score = 3520 bits (1906), Expect = 0.0
Identities = 2102/2196 (96%), Gaps = 16/2196 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCGAATCTTTCGTGTTGTTTACTGTTCAAAATTGAAATTTTAAATATATaaa 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 37 TCTCTCTCTCGAATCTTTCGTGTTGTTTGCTGTTCAAAATTGAAATTTTAAATAT-T-AA 94
Query 61 aaaaaaCAGAAGATAACTTGTTCTGCTTCTTGTCGTGTCTGTCACAGTTTGAATTtctct 120
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 95 AAAAAA-AGAAGAAAACTTGTTCTGCTTCTTGTCGTGTCCGTCACAGTTTGAATTTCTCT 153
Query 121 ctctc--tctctctTCCTCATAAAAATCTCTACTTTACCTTTAGTTTTCGAAGGGTTTCA 178
||||| |||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 154 CTCTCTTTCTCTCTTCCTCATAAAAATCTCTGCTTTACCTTTTCTTTTCAAAGGGTTTCA 213
Query 179 TTTTGATTCTA-GG--GTTCTAAATGCGACATTTTGACTGATGGGTCTCTGTTGAATTCG 235
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 214 TTTTGATTCTAGGGTTGTTCTAAATGCGACATTTTGACTGATGGGTCTTTGTTGAATTTG 273
Query 236 AAGAGA--AAAAGAG-AA-AGATAGTTCTAATGGAGCCTCCAACGGGAATCTTGGCTTCT 291
|||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 274 AAGAGAGCAAAAGAGAAAGAGATTGTTCTAATGGAGCCTCCAACGGGAATCTTGGCTTCT 333
Query 292 CTGTGGCAATTTATACTCTTCATTCCTTATTTCACTGGATTACTGCTTCTTGGTGTCATT 351
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 334 CTGTGGCAATTTATACTCTTCATTCCTTATTTCACTGGTTTACTGCTTCTCGGTGTCATT 393
Query 352 AAAGGCATCGTTTTCTGCCCGCTTATATGCCTTATTGTGGCTATTGGAAACTCTGCAATC 411
||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 394 AAAGGTATCGTTTTATGCCCGCTTATATGCCTTACTGTGGCTATTGGAAACTCTGCAATC 453
Query 412 ATCTTAGGTCTTTTACCGGTACACGCGATTTGGACTCTATATTCGATAGCGAGTGCTAAA 471
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATCTTAGGCCTTTTACCAGTACACGCGATTTGGACTCTATATTCGATAGCGAGTGCTAAA 513
Query 472 CAGTTAGGACCGATCTTGAAGATCTTTCTGTGTTTATGCGTTCCTCTTGGTGTCATCCTC 531
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 514 CAGTTAGGACCAATCCTGAAGATCTTTCTGTGTTTATGCGTTCCTCTTGGTGTCATTCTC 573
Query 532 TGGCTTGTGGTTAGTATCGTAGGGAGTATTCTCGGAGGAGCTATATATGGTTTTCTTTCT 591
|||||||||||||||||| |||| ||| |||| ||||||||||| ||||| |||||||||
Sbjct 574 TGGCTTGTGGTTAGTATCTTAGGAAGTGTTCTTGGAGGAGCTATTTATGGATTTCTTTCT 633
Query 592 CCAATATTTGCTACATTCGATGCTGTTGGCGAAGGGAAGTCTAATCCGTTTTTCCATTGC 651
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 634 CCAATATTTGCTACTTTCGATGCTGTTGGTGAAGGGAAGTCTAATCCGTTTTTCCATTGC 693
Query 652 TTTTATGATGGAACTTGGAGCACTGTTCAAGGCAGTTTCACCGTTGTCTGCGATTTTAAA 711
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 694 TTTTATGATGGAACTTGGAGCACTGTTCAAGGCAGTTTCACCGTTGTTTGTGATTTTAAA 753
Query 712 GATGTTTGCTTTCACTCCTACTTTTCTTTTATGGATGATCTTCGAACATCTAGTGCGGAT 771
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 754 GATGTTTGCTTTCACTCCTACTTTTCTTTTATGGATGATCTTCGAACATCTACTGCGAAC 813
Query 772 CGTCACTATTATGAAATAAGGTTACTTCAAATTCCAGGCGCTGTGATTGTTGCGGTTCTC 831
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 814 CGTCACTATTATGAAATAAGGTTACTTCAAATTCCAGGTGCTGTGATTGTTGCGGTTCTC 873
Query 832 GGAATTCTTGTTAATTTTCCAGTAATTTCACTCTTAGCATTGTGTAAAAGCCCGTACATG 891
|||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 874 GGAATTCTTGTTGATTTCCCAGTGATTTCACTCTTAGCATTGTGTAAAAGCCCGTACATG 933
Query 892 TTGTTCAAAGGGTGGCACCGTTTGTTTCATGATCTCATTGGACGTGAAGGTCCTTTCTTG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TTGTTCAAAGGGTGGCACCGTTTGTTTCATGATCTCATTGGACGTGAAGGTCCTTTCTTG 993
Query 952 GAAACAATGTGTGTCCCAATCGCTGGCCTTGTGATCTTACTCTGGCCTTTAGCTGTTGTC 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GAAACAATGTGTGTCCCAATCGCTGGCCTTGTGATCTTACTCTGGCCTTTAGCTGTTGTT 1053
Query 1012 GGAGCAGTTTTAGGATCCATGGTCTCTAGTGTCTTCCTCGGTGCTTATGGCGGTGTAGTC 1071
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1054 GGAGCAGTTTTAGGATCCGTGGTCTCTAGTGTCTTCCTTGGTGCTTATGGCGGTGTAGTC 1113
Query 1072 TCATATCAGGAGTCATCGTTCTTCTTCGGTCTCTGCTATGTTGTTGCTTCTGTTTCTATA 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 TCATATCAGGAGTCATCGTTCTTCTTCGGTCTCTGCTATGTTGTTGCTTCTGTTTCTATT 1173
Query 1132 TATGATGAGTATAGCAACGATGTTCTTGACATGCCTGAAGGTTCTTGCTTTCCCAGGCCA 1191
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1174 TACGATGAGTATAGCAACGATGTTCTTGATATGCCTGAAGGTTCTTGCTTTCCCAGGCCA 1233
Query 1192 ATATATCGAAGAAACGAAGAGGTCGCTAGTACGGCATTTTCTGGTGGTCTTTCAAGACCA 1251
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1234 ATATATCGAAGAAACGAAGAGGGCGCTAGTACGGCATTTTCTGGTGGTCTTTCAAGACCG 1293
Query 1252 AACTCTTTCAAGACAACTCCATCAAGAGGAGGATCAAACAAAGGCCCAATGATTGACCTG 1311
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 AACTCCTTCAAGACAACTCCATCAAGAGGAGGATCAAACAAAGGCCCAATGATTGACCTG 1353
Query 1312 AAACCGCTTGATCTTTTGGAGGCTCTATTTGTGGAATGTAGGCGGCACGGAGAGATTATG 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 AAACCGCTTGATCTTTTGGAGGCTCTATTTGTGGAATGTAGGCGGCACGGAGAGATTATG 1413
Query 1372 GTAACGAAAGGGATTATAAATTCAAAAGACATCGAGGAAGCTAAATCTAGCAAAGGCAGT 1431
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1414 GTAACGAAAGGGATTATAAATTCAAAAGACATTGAAGAAGCTAAATCTAGCAAAGGCAGT 1473
Query 1432 CAAGTGATCAGCTTTGGTTTACCTGCTTATTCTCTTCTTCAAGAGCTTTTACGCTCTATC 1491
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1474 CAAGTGATCAGCTTTGGCTTACCTGCTTATTCTCTTCTTCACGAGCTTTTACGCTCTATC 1533
Query 1492 AAATCTAATTCCACCGGTTTATTACTCGGTGACGGTGTAACGGAGATAACTACCAGAAAC 1551
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AAATCTAACTCCACCGGTTTATTACTCGGTGACGGTGTAACGGAGATAACTACCAGAAAC 1593
Query 1552 CGCCCAAAAGATGCGTTTTTTGACTGGTTTCTGAATCCGTTTTTGATCCTTAAAGACCAG 1611
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1594 CGCCCAAAAGATGCGTTTTTTGATTGGTTTCTGAATCCGTTTTTGATCCTTAAAGACCAG 1653
Query 1612 ATCGAAGCTGCAAACCTATCTGTGGAAGAAGAAGAGTATCTTGGTAAATTGGTACTGCTC 1671
|||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||
Sbjct 1654 ATCGAAGCTGCAAACCTATCCGAGGAAGAAGAAGAGTATCTTGGTAAATTGGTATTACTC 1713
Query 1672 TTTGGAGATTCCGAGAGACTTAAAAGCTCCATTGTTGAATCTGAATCTCCTCCTTTAACC 1731
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1714 TTTGGAGATTCAGAGAGACTTAAAAGCTCCATTGTTGAATCTGAATCTCCTCCTCTAACT 1773
Query 1732 GAACTCAGGAAAGGCGAACTTGATGCATTTGCTCGCAGGCTTCAAGGATTAACCAAATCA 1791
|||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1774 GAACTCAGAAAAGCCGAACTTGATGCCTTTGCTCGCAGGCTTCAAGGATTAACCAAATCA 1833
Query 1792 GTATCAAGATATCCAACATTCAGAAGACATTTTGTGGAACTGGTCAAGAAACTATCAAAT 1851
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1834 GTATCAAGATATCCAACATTCAGAAGACATTTTGTGGAACTAGTCAAGAAACTATCAAAT 1893
Query 1852 GATCTAGACAATAAACATAACCGTTTTGAAGGCGGTTCAAGATCAGTTCCACGTCCCGGG 1911
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1894 GATCTAGACAATAAACATAACCGTTTTGAAGGCGGTTCGAGATCAGTTCCACGTCCCGGG 1953
Query 1912 AAAACGGTGTCTCGGATTTTCAGTCAGAAATCGTTCAAGAAAAAGACAAGCAGCAATGGG 1971
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1954 AAAACGGTGTCTCGGATTTTCAGCCAAAAATCGTTCAAGAAAAAGACAAGTAGCAATGGG 2013
Query 1972 TCAGATCAAGATTCACCAAACAGAGGGTTAAGAGACATTGATATTGTGTAAGTAAATGTT 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 TCAGATCAAGATTCACCAAACAGAGGGTTAAGAGACATTGATATTGTGTAAGTAAATGTT 2073
Query 2032 GTGTGACCAGAATTAGATCGAAACTGCGTCTGTTTTTAGCTCTGTAATGATAAATTTATA 2091
|| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||
Sbjct 2074 ATGCGACCAGAATTAGACCGAAACTTCGTCTGCTTTTAGCTCTGTAATGATAAATTTATA 2133
Query 2092 CAGATTCCAAGTGAATATGAAACTGTTTTGATGT-TCTAACAAATGTTTTTCACTCAGCT 2150
|||||||||||||||||||||||||||| || | ||||||||||||||| || ||||||
Sbjct 2134 CAGATTCCAAGTGAATATGAAACTGTTTC-ATTTATCTAACAAATGTTTTACATTCAGCT 2192
Query 2151 TGTGCTTGATGATGT-T-GTTCCTCAGAAACAGCAG 2184
| ||||||||||||| | ||| ||||||||||||||
Sbjct 2193 TTTGCTTGATGATGTGTTGTTTCTCAGAAACAGCAG 2228
> AT3G27390.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G40640.1);
Has 101 Blast hits to 99 proteins in 12 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10133196-10136630
REVERSE LENGTH=2189
Length=2189
Score = 1009 bits (546), Expect = 0.0
Identities = 1294/1642 (79%), Gaps = 103/1642 (6%)
Strand=Plus/Plus
Query 257 TTCTAATGGAGCCTCCAACGGGAATCTT-G-GCTTCTCTGTGGCAATT-TATACTCTTCA 313
||| |||||||||||||| || || || | |||||| | | ||||| | ||||||||
Sbjct 243 TTC-AATGGAGCCTCCAATAGG-AT-TTCGAGCTTCTTTATTCCAATTCT-TACTCTTCC 298
Query 314 TTCCTTATTTCACTGGATTACTGCTTCTTGGTGTCATTAAAGGCATCGTTTTCTGCCCGC 373
|||||||||||| |||||| || |||| ||| |||| ||||| || ||||| ||||| |
Sbjct 299 TTCCTTATTTCATTGGATTGCTATTTCTGGGTTTCATCAAAGGTATTGTTTTGTGCCCAC 358
Query 374 TTATATGCCTTATTGTGGCTATTGGAAACTCTGCAATCAT-CTTAGGTCTTTTACCGGTA 432
| ||||||| ||||| |||| || ||||| || |||| || | ||||| |||| ||
Sbjct 359 TCGTATGCCTCGTTGTGACTATAGGCAACTCCGCGGTCATACTGA-GTCTTCTACCAGTC 417
Query 433 CAC-GCGATTTGGACTCTATATTCGATAGCGAGTGCTAAAC-AGTTAGGACCGATCTTGA 490
||| || |||||||| | ||||| || | |||||| |||| || ||||||| |||||||
Sbjct 418 CACATCG-TTTGGACTTTCTATTCAATCGTGAGTGCCAAACAAG-TAGGACCAATCTTGA 475
Query 491 AGATCTTTCTGTGTTTATG-CGTTCCT-CTTGGTGTCATCCTCTGGCTTGTGGTTAGTAT 548
|||||||||| || ||||| | ||||| | || |||| ||||||| | | ||| ||||
Sbjct 476 AGATCTTTCTATGCTTATGTC-TTCCTGC-TGCCATCATTCTCTGGCCTATTGTTGGTAT 533
Query 549 CGTAGGGAGTATTCTCGGAGGAGCTATATATGGTTTTCTT-TCTCCAATATTT-GCTACA 606
|||| ||| || | ||||||||| ||||||| |||||| || ||||| ||| || ||
Sbjct 534 TTTAGGAAGTGTTTTGGGAGGAGCTTTATATGG-TTTCTTCTCCCCAAT-TTTCGCCACC 591
Query 607 TTCGATGCTGTTGGCGAAGGGAAGTCTAATCC-GTTTTTCCATTGCTTTTATGATGGAAC 665
|| ||||||||||| ||||| ||| || | || |||||||||||||||||||||||||||
Sbjct 592 TTTGATGCTGTTGGTGAAGGCAAGCCTTA-CCAGTTTTTCCATTGCTTTTATGATGGAAC 650
Query 666 TTGGAGCACTGTTCAAGGCAGTTTCACCGTTGT-CTGCGATTTTAAAGATGTTTGCTTTC 724
||||||||| | ||| |||| ||||||||||| | | ||||||||||||||||||||||
Sbjct 651 TTGGAGCACCATGCAACGCAGCTTCACCGTTGTTCGG-GATTTTAAAGATGTTTGCTTTC 709
Query 725 ACTCCTACTTTTCTTTTATGGATGATCTTCGAA-CAT--CTAGTGCGGATCGTCACTATT 781
| || ||||| || |||||||||| || ||| || || || ||||||| | ||||
Sbjct 710 ATTCATACTTCTCACTTATGGATGAGCT--GAAACAAAGCT-GTCCGGATCGAAAATATT 766
Query 782 ATGAAATAAGGTTACTTCAAATTCCAGGCGCTGTGATT-GTTGCGGTTCTCGGAATTCTT 840
||||||||||| |||||||| ||||||| ||| | | | ||| | |||||||| || |||
Sbjct 767 ATGAAATAAGGCTACTTCAACTTCCAGGGGCTTT-AGTAGTTTCAGTTCTCGGGATACTT 825
Query 841 GTTAATTTTCCAGTAATTTCACTCT-TAGC-ATTGTGTAAAAGCCCGTACATGTTGTTCA 898
||| || ||| || || ||||| | |||| || || |||||||| || ||||||||||
Sbjct 826 GTTGATCCTCCGGTTATCTCACT-TGTAGCCATA-TGCAAAAGCCCTTATATGTTGTTCA 883
Query 899 AAGGGTGGCACCGTTTGTTTCATGATCTC-ATTGGACGTGAAGGTCCTTTCTTGGAAACA 957
|||| ||||||||||||||||| || || |||||||| |||||||| |||||||| |||
Sbjct 884 AAGGATGGCACCGTTTGTTTCACGA-CTTGATTGGACGGGAAGGTCCATTCTTGGAGACA 942
Query 958 ATGTGTGTCCCAATCGCTGGCCTTGTGATCTTACTCTGGCCTTTAGCTGTTGTCGGA-GC 1016
||||||||||| || || ||||| | |||||||||||||||||| ||||| ||| ||
Sbjct 943 ATGTGTGTCCCCATAGCAGGCCTCGCGATCTTACTCTGGCCTTTGGCTGTCA-CGGGCGC 1001
Query 1017 AGTT-TTAGGATCCA-TGGTCTCTAGTGTCTTCCTCGGTGCTTATGGC-GGTGTAGTCTC 1073
||| || ||||| | | |||||||| ||||||| |||||||||| | || ||||||||
Sbjct 1002 GGTTATT-GGATC-AGTTATCTCTAGTATCTTCCTTGGTGCTTATG-CAGGAGTAGTCTC 1058
Query 1074 ATATCAGGAGTCATCGTTCTT-CT-TCGGTCTCTGCTATGTTGTTGCTTCTGTTTCTATA 1131
|||||| || ||||| || || || | || ||||||||| | ||||| ||||| || ||
Sbjct 1059 ATATCAAGAATCATCTTT-TTACTAT-GGACTCTGCTATATAGTTGCCTCTGTCTCCATT 1116
Query 1132 TATGATGAGTATAGCAACGATGTTCTTGACATGCCTGAAGGTTCTTGCTTTCCCAGGCC- 1190
|| || |||||||||| |||| | |||||| |||||||||||||||| ||||| |||||
Sbjct 1117 TACGACGAGTATAGCACCGATATACTTGACTTGCCTGAAGGTTCTTGTTTTCCAAGGCCG 1176
Query 1191 AATATATCGAAGAAACGAAGAGGT-CGCTAGTACGGCATTTTCTGGTGGTCTTTCAAGAC 1249
|| |||||||||||| || |||| | | | ||| | ||||||||| | | ||||||
Sbjct 1177 AA-ATATCGAAGAAAGGACGAGGAAC-C-A--ACGCCTTTTTCTGGTCCTGTACCAAGAC 1231
Query 1250 CAAACTCTTTCAAGA-CAAC-TCCATC-A--AGAGGAGGATCAAACAAAGGCCCAATGAT 1304
| |||| |||||| | | || ||| | |||||||||||| || || ||| |||||
Sbjct 1232 TAGGCTCTGTCAAGAACG-CGTC-ATCGATGAGAGGAGGATCAGTCAGAGTCCCTATGAT 1289
Query 1305 TGACCTGAAACCGCTTGATCTTTTGGA-G-GCTCTATTTGTGGAATGTAGGCGGCACGGA 1362
||| | || || || ||||| ||| | | ||||| || ||||||||||| | | |||
Sbjct 1290 TGATATTAAGCCTCTCGATCTGTTGAATGAGCTCT-TT-GTGGAATGTAGAAGATATGGA 1347
Query 1363 GA-GATTATGGTAACGAAAGGGATT-ATAAATTCAAAAGACATCGAGGAAGCTAAATCTA 1420
|| | || | | || ||||| | | ||||| || ||||| ||||| ||||| | |||||
Sbjct 1348 GAAGTTT-TAGCGACAAAAGG-ACTGATAAACTCGAAAGATATCGAAGAAGCGAGATCTA 1405
Query 1421 GCAAAGGCAGTCAAGTGATCAGCTTTGGTTTACCTGCTTATTCTCTTCTTCAAGAGCTT- 1479
| |||||||| |||||||||||| |||||||||| |||||| |||||| | ||| ||
Sbjct 1406 GTAAAGGCAGCCAAGTGATCAGCGTTGGTTTACCGGCTTATGGACTTCTTTACGAGATTC 1465
Query 1480 TTACGCTCTA-TCAAATCTAATTCCACCGGTTTATTACTCGGTGACGGTGTAACGGAGAT 1538
|| ||||| | ||||| | ||||| |||| || ||||| ||||||||||||| || ||
Sbjct 1466 TT-CGCTC-AGTCAAAGCCAATTCTTCCGGCTTGTTACTAAGTGACGGTGTAACTGAAAT 1523
Query 1539 AACTACCA-GAAACCGCCCAAAAGATGCGT-TT-TTTGACTGGTTTCTGAATCCGTTTTT 1595
|||||||| ||| |||||||||||| ||| || ||||| ||||||||||||||||||||
Sbjct 1524 AACTACCATGAA-CCGCCCAAAAGA--CGTCTTCTTTGATTGGTTTCTGAATCCGTTTTT 1580
Query 1596 GATCCTTAAAG-ACCAGATCGAA-GCTGCAAACCTATCTGTGGAAGAAGAAGAGTATCTT 1653
||| || |||| | || || ||| ||| ||||| | |||| ||||||||||||||| ||
Sbjct 1581 GATACT-AAAGGAGCAAAT-GAAAGCTACAAACTTGTCTGAGGAAGAAGAAGAGTACCTC 1638
Query 1654 GGTAA-ATTGGTACTGCTCTTTGGAGATTCC-GAGAGACTTAAA-AGCTCCATTGTTGAA 1710
|| || ||| || |||| ||||||||| || ||||| || ||| ||||| | || |
Sbjct 1639 GG-AAGATTAGTTTTGCTATTTGGAGAT-CCAGAGAGGCT-AAAGAGCTCGAATGCC-AT 1694
Query 1711 T-CTGAATCTCCTCCTTTAACCGAAC-TCAGGAAAG-GC-GAACTTGATGCATTTGCTCG 1766
| | | ||||||||| | ||||||| | | |||| || ||||| ||||| ||||||||
Sbjct 1695 TTCCGCGTCTCCTCCTCTCACCGAACGT-A--AAAGAGCCGAACTCGATGCCTTTGCTCG 1751
Query 1767 CAGGCTTCAAGGATTAACCAAATCAGTATCAAGATATCCAACATT-CAGAAGACATTTTG 1825
|||| | ||||| |||| ||| | |||||||||||||||||||| | | |||||||||
Sbjct 1752 CAGGATGCAAGGGCTAACGAAAACGGTATCAAGATATCCAACATTTC-GTCGACATTTTG 1810
Query 1826 TGGAACTGGTCAAGAAACTATC 1847
||| | | || |||||||||||
Sbjct 1811 TGGCATTAGTGAAGAAACTATC 1832
> AT5G40645.1 | Symbols: | RPM1-interacting protein 4 (RIN4) family
protein | chr5:16280283-16280972 REVERSE LENGTH=438
Length=438
Score = 185 bits (100), Expect = 1e-45
Identities = 126/138 (91%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 2050 CGAAACTGCGTCTGTTTTTAGCTCTGTAATGATAAATTTATACAGATTCCAAGTGAATAT 2109
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CGAAACTTCGTCTGCTTTTAGCTCTGTAATGATAAATTTATACAGATTCCAAGTGAATAT 376
Query 2110 GAAACTGTTTTGATGT-TCTAACAAATGTTTTTCACTCAGCTTGTGCTTGATGATGT-T- 2166
|||||||||| || | ||||||||||||||| || ||||||| ||||||||||||| |
Sbjct 375 GAAACTGTTTC-ATTTATCTAACAAATGTTTTACATTCAGCTTTTGCTTGATGATGTGTT 317
Query 2167 GTTCCTCAGAAACAGCAG 2184
||| ||||||||||||||
Sbjct 316 GTTTCTCAGAAACAGCAG 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108332776110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5