BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493920

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40620.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   385    2e-106


> AT5G40620.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:16269263-16269655 
FORWARD LENGTH=393
Length=393

 Score =  385 bits (208),  Expect = 2e-106
 Identities = 344/404 (85%), Gaps = 31/404 (8%)
 Strand=Plus/Plus

Query  1    ATGTTTCGACGATAC-TTT-TCTTTCGTAA--C-TCTCATAGGACTTGCTTTAGCCGGTG  55
            |||| ||||| | || ||| ||||||||||  | | ||||||| |||||| |||||||||
Sbjct  1    ATGTCTCGAC-A-ACATTTCTCTTTCGTAATTCTTTTCATAGGTCTTGCTCTAGCCGGTG  58

Query  56   GAGCTTATGCCGCAAATTCATCTCCACCTTCTCCACCGTCAGATAGTAGCACCGAGAAAT  115
            ||||||||||||| ||||||||| ||||||||||||||||| | | ||||||  |    |
Sbjct  59   GAGCTTATGCCGCCAATTCATCTGCACCTTCTCCACCGTCA-A-A-TAGCACAAACTTTT  115

Query  116  CTCCTCCGGCGACCCCCTCCCTCCCCTC-GTTGAACGCAACGTTCGTT-C--CAGATTAC  171
             |  ||||| |||||||| | || || | ||| ||||||||| ||||| |  ||||||||
Sbjct  116  TTTTTCCGGAGACCCCCTTCATCTCCACGGTT-AACGCAACGGTCGTTCCTGCAGATTAC  174

Query  172  TCCGATTACGAAGTCCCGATGAATCTAGCACCTGATGGAGTCGAAA-TCGTGCAAGATTA  230
            || |||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |
Sbjct  175  TCTGATTACGAAGTCCCTATGAATCTAGCACCTGATGGAGTC-AAAGTCGTGCAAGATGA  233

Query  231  CGTGCCAATTGTTC-AAGATGAAGATAAAGAAGCTGATGA----G-----CTTGAAGGTA  280
            | ||||| ||| || |||| ||||||||||||||||||||    |     | ||||||||
Sbjct  234  CTTGCCACTTG-TCGAAGAAGAAGATAAAGAAGCTGATGAGTTTGCACAACCTGAAGGTA  292

Query  281  AATCAGATAAGAAAGCAAATCAACCTAAGGACTCAGcttcttcttcttcttattcttcct  340
            |||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||
Sbjct  293  AATCAGATAAGAAAGCAAATCAGCCTAAGGACTCAG---CTTCTTCTTCTTATTCTTCCT  349

Query  341  ctttcGTCGTCTTTGTCGTTGCTGCTGGATTGTTTTTATTTTGA  384
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  350  CTTTCGTCGTCTTTGTCGTTGCTGCTGGATTGTTTTTATTTTGA  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5