BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493921
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40610.1 | Symbols: | NAD-dependent glycerol-3-phosphate de... 2300 0.0
> AT5G40610.1 | Symbols: | NAD-dependent glycerol-3-phosphate
dehydrogenase family protein | chr5:16264861-16267354 REVERSE
LENGTH=1509
Length=1509
Score = 2300 bits (1245), Expect = 0.0
Identities = 1363/1418 (96%), Gaps = 16/1418 (1%)
Strand=Plus/Plus
Query 1 ATAGAGAATTGAAGACACTACTACTGTTACTTACACGTACACGCTTtctctctctctctc 60
||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1 ATAGAGAATTGAAGACACTGCTACTGTTACTTCCACGTAAACG-TTTCTCTCTCTCTCTC 59
Query 61 AACGTCAAACGTGTCCCCTTTCAAATCTCCATCTTCCATGCGcctccgatc---cttctt 117
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 60 AACGTCAAACGTGTCCCCTTTCAAATCTCCATCTTCCATGCGCTTCCGATCATTCTTCTT 119
Query 118 ct--t-ctctatcttctccttttcacattctccgtctcttccttc-c--tcctcctctcg 171
|| | ||||||||||||| ||||||||||| || ||| |||||| | || ||||||||
Sbjct 120 CTCCTCCTCTATCTTCTCCCTTTCACATTCT-CG-CTC-TCCTTCTCTTTCTTCCTCTCG 176
Query 172 tttctcctctctc-cgcgccgctatgtctcctgctctcGAGAAATCCCGACAAGGCAATG 230
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TTTCTCCTCTCTCTC-CGCCGCTATGTCTCCTGCTCTCGAGAAATCCCGACAAGGCAATG 235
Query 231 GTGAATGTAATGAGGTTTCGAAATCTAAGGTTACGGTCGTTGGTAGTGGCAATTGGGGAA 290
||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 236 GTGGATGTAATGATGATTCGAAATCTAAGGTCACGGTCGTTGGTAGTGGCAATTGGGGAA 295
Query 291 GTGTTGCTGCTAAGCTCATTGCTTCTAATGCCATCAAGCTTCCTTCTTTCCATGATGAAG 350
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 296 GTGTTGCTGCTAAGCTCATTGCTTCTAATGCCCTCAAGCTTCCTTCTTTCCATGATGAAG 355
Query 351 TGAGGATGTGGGTGTTTGAGGAGGTTCTACCAAATGGTGAGAAGCTTACTGATGTTATCA 410
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 356 TGAGGATGTGGGTGTTTGAGGAGGTTCTACCAAATGGTGAGAAGCTCAATGATGTTATCA 415
Query 411 ACAAGACCAATGAAAATGTCAAGTACCTTCCTGGGATTAAGCTAGGAAGAAATGTTGTTG 470
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 ACAAGACCAATGAAAATGTCAAGTACCTCCCTGGGATTAAGCTAGGAAGAAATGTTGTTG 475
Query 471 CGGATCCTGACCTTGAAAATGCAGTGAAGGAAGCAAACATGTTGGTTTTTGTTACACCGC 530
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 476 CGGATCCTGACCTTGAAAATGCAGTGAAGGACGCGAACATGTTGGTTTTTGTTACACCGC 535
Query 531 ATCAGTTTATGGATGGTATATGCAAGAAATTAGATGGAAAGATCACAGGAGATGTTGAGG 590
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 ATCAGTTTATGGATGGTATATGCAAGAAGTTAGATGGAAAGATCACAGGAGATGTTGAGG 595
Query 591 CTATATCTCTTGTTAAGGGAATGGAAGTGAAGAAGGAAGGTCCATGTATGATCTCAAGTC 650
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 596 CTATATCTCTTGTTAAAGGAATGGAAGTGAAGAAGGAAGGTCCTTGTATGATCTCAAGTC 655
Query 651 TCATTTCCAAGCAACTTGGTATCAATTGTTGTGTTCTTATGGGGGCAAACATTGCAAACG 710
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 656 TCATTTCCAAGCAACTTGGTATCAATTGTTGTGTTCTTATGGGCGCAAACATTGCAAACG 715
Query 711 AGATAGCTGTGGAGAAGTTTAGTGAAGCAACAGTTGGATATAGAGGAAGTAGAGAAATAG 770
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 716 AGATAGCTGTGGAGAAGTTTAGTGAAGCAACGGTTGGATATAGAGGGAGTAGAGAAATAG 775
Query 771 CAGACACATGGGTTCAGTTGTTTAGTACTCCGTATTTTATGGTCACACCGGTCCATGATG 830
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CGGACACATGGGTTCAGTTGTTTAGTACTCCGTATTTTATGGTCACACCGGTCCATGATG 835
Query 831 TGGAAGGAGTAGAGTTGTGTGGGACCTTGAAGAATGTAGTGGCTATTGCAGCGGGTTTCG 890
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 836 TGGAAGGAGTAGAGTTATGTGGGACTTTGAAGAATGTAGTTGCTATTGCAGCGGGTTTCG 895
Query 891 TGGACGGTTTGGAAATGGGTAATAACACAAAGGCTGCAATCATGAGGATTGGTCTAAGAG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGGACGGTTTGGAAATGGGTAATAACACAAAGGCTGCAATCATGAGGATTGGTCTAAGAG 955
Query 951 AGATGAAAGCGCTCTCAAAGCTTCTGTTTCCATCTGTTAAAGACAGTACTTTCTTCGAAA 1010
|||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 956 AGATGAAAGCACTCTCAAAGCTTTTGTTTCCATCTGTTAAAGATAGTACTTTCTTCGAGA 1015
Query 1011 GCTGCGGTGTAGCAGATGTCATTACAACTTGCTTAGGAGGAAGAAACCGAAGAGTTGCGG 1070
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1016 GCTGCGGTGTAGCAGATGTCATTACAACTTGCTTAGGAGGAAGAAACCGGAGAGTTGCGG 1075
Query 1071 AAGCATTTGCAAAAAGCGGAGGAAAAAGGTCTTTTGATGAGCTTGAAGCAGAGATGCTAC 1130
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AAGCATTTGCAAAAAGCAGAGGAAAAAGGTCTTTTGATGAGCTTGAAGCAGAGATGCTAC 1135
Query 1131 AAGGGCAAAAGCTACAGGGGGTATCGACGGCAAGAGAGGTCTACGAGGTGTTGAACCATT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 AAGGGCAAAAGCTACAGGGGGTATCGACGGCAAGAGAGGTCTACGAGGTGTTGAAACATT 1195
Query 1191 GTGGATGGTTGGAGATGTTTCCGCTCTTTTCAACGGTTCACCAAATCTGCACGGGTCGTC 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1196 GTGGATGGTTGGAGATGTTTCCGCTCTTTTCAACGGTTCACCAAATCTGCACTGGTCGTC 1255
Query 1251 TTCAGCCTGAAGCCATCGTCCAATACCGCGAGAACAAACTATAA-TTTTTATTGATGGTA 1309
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1256 TTCAACCTGAAGCCATCGTCCAATACCGCGAGAACAAACTATAACTTTTTATTGATGGTA 1315
Query 1310 CATTCATCTTCAAAGATTGATGAATTTGGTGTAGAGGTTATCGTTTTTGTGTGCGCCTGT 1369
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1316 CATTCATCTTCAAAGATTGATGAATTTGATGTAGAGGTTAACGTTTTTGTGTGCGCCTGT 1375
Query 1370 TTGCTGGTGAGTGAACCTTGTAGTTTGCTTGGACCGAG 1407
|||||||| |||||||||||||| ||||||||||||||
Sbjct 1376 TTGCTGGTTAGTGAACCTTGTAGCTTGCTTGGACCGAG 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5