BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493925
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2 ... 1543 0.0
AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydro... 1003 0.0
AT2G14475.1 | Symbols: | pseudogene, similar to putative beta ... 180 3e-44
> AT5G40580.1 | Symbols: PBB2 | 20S proteasome beta subunit PBB2
| chr5:16248286-16250756 REVERSE LENGTH=1199
Length=1199
Score = 1543 bits (835), Expect = 0.0
Identities = 947/1000 (95%), Gaps = 12/1000 (1%)
Strand=Plus/Plus
Query 7 AGTGGTGAATCGGAAAATGACGCACTCGTCCGTCGATTTACCGCCGAAAGGTGGGTTTAG 66
||||||||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||
Sbjct 134 AGTGGTGAATCGGAAAATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAG 193
Query 67 CTTTGATCTGTGCAAAAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCTCCGTCGTT 126
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 194 CTTCGATCTGTGCAAAAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCGCCGTCGTT 253
Query 127 TCTCAAGACTGGAACAACTATTGTTGGGTTGAT-TTTCAAGGATGGTGTGATACTTGGGG 185
||||||||||||||| ||||| ||||| ||||| ||| ||||||||||| ||||||||||
Sbjct 254 TCTCAAGACTGGAACGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGG 312
Query 186 CTGATACACGGGCAACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CTGATACACGGGCAACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACT 372
Query 246 ACATGGCACCAAACATTTATTGTTGTGGTGCAGGAACTGCTGCTGACACTGAAGCAGTAA 305
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 373 ACATGGCACCAAACATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAA 432
Query 306 CTGATATGGTCAGCTCACAGTTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAG 365
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 433 CTGATATGGTCAGCTCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAG 492
Query 366 TCATTACTGCATTGACCCTTCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCAG 425
|| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 493 TCGTTACTGCATTGACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAG 552
Query 426 CTGCTCTTGTACTTGGTGGAGTTGACATTACCGGGCCTCATCTGCATACCATATACCCAC 485
|||||||||| |||||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 553 CTGCTCTTGTGCTTGGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATATACCCAC 612
Query 486 ACGGTTCCACTGATACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGT 545
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 ACGGTTCTACTGACACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGT 672
Query 546 CAGTGTTTGAAGCAAAGTATAAAGAAGGTCTAACTAGAGACGAAGGAATCAAGTTGGTTG 605
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 673 CAGTGTTTGAAGCAAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTG 732
Query 606 CTGAAGCCATATGCTCTGGTATATTTAACGACCTTGGTAGTGGTAGCAATGTGGATATCT 665
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 733 CTGAAGCCATATGCTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCT 792
Query 666 GTGTGATCACTAAGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GTGTGATCACTAAGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAA 852
Query 726 CCTATGTTAGCAGCAAAGGCTATTCATTCACCAAGAAAACTGAGGTTCTACTCACCAAAA 785
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 853 CCTATGTTAGCAGCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAA 912
Query 786 TTACACCATTATCGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAAT 845
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TTACACCATTATTGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAAT 972
Query 846 GAATCTCGTGTAAGAGAC-GACACTAAGAGTGAAATCATTGTTCTACTTCACATGACAGT 904
||||||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||
Sbjct 973 GAATCTCGTGTGAGAGACAGATACTAAGAGTGAAACCATTGTTCTACCTCACATGACAGT 1032
Query 905 CAT-TTT-C-T-----ACTTTGTTTAATTTTAACGATTAAAATCGAATCTTAGTTGCTTT 956
||| ||| | | |||||||| ||| | ||||| |||||||||||| ||||||| |
Sbjct 1033 CATGTTTACATTTTCTACTTTGTTCAATATGAACGACTAAAATCGAATCGTAGTTGCCTC 1092
Query 957 CATTTCAGTCTTTAGATTTGGCTTGAACTTATGATTAATG 996
|||||| ||||||| ||||||||||||||| |||||||||
Sbjct 1093 CATTTC-GTCTTTAAATTTGGCTTGAACTTGTGATTAATG 1131
> AT3G27430.2 | Symbols: PBB1 | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:10152517-10155342
FORWARD LENGTH=1230
Length=1230
Score = 1003 bits (543), Expect = 0.0
Identities = 739/834 (89%), Gaps = 12/834 (1%)
Strand=Plus/Plus
Query 20 AAAATGACGCACTCGTCCGTCGAT-TTACCGCCGAAA-GGTGGGTTTAGCTTTGATCTGT 77
|||||| |||| || |||| ||| || ||||| ||| |||||||||||||| |||||||
Sbjct 116 AAAATGTCGCAATCAACCGTAGATGTT-CCGCC-AAAGGGTGGGTTTAGCTTCGATCTGT 173
Query 78 GCAAAAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCTCCGTCGTTTCTCAAGACTG 137
| || || ||||||||||| ||||| |||||||||||||||||||| ||| | |||||||
Sbjct 174 GTAAGAGAAATGATATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTTTTGAAGACTG 233
Query 138 GAACAACTATTGTTGGGTTGATTTTCAAGGATGGTGTGATACTTGGGGCTGATACACGGG 197
||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 234 GAACAACCATTGTTGGTTTGATTTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAG 293
Query 198 CAACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACCAA 257
||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 294 CAACTGAGGGGCCAATTGTTGCTGATAAGAACTGTGAGAAGATTCACTATATGGCACCAA 353
Query 258 ACATTTATTGTTGTGGTGCAGGAACTGCTGCTGACACTGAAGCAGTAACTGATATGGTCA 317
|||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 354 ACATATATTGCTGTGGTGCAGGAACTGCGGCTGATACTGAAGCAGTCACTGATATGGTCA 413
Query 318 GCTCACAGTTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCATTACTGCAT 377
|||||||| |||| |||||| | ||||||||||| ||||| ||||| ||||||||||| |
Sbjct 414 GCTCACAGCTGCGATTGCATCGTTACCAGACTGGTCGAGACTCTCGGGTCATTACTGCTT 473
Query 378 TGACCCTTCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCAGCTGCTCTTGTAC 437
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 474 TGACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGTCATGTCTCTGCTGCTCTTGTAC 533
Query 438 TTGGTGGAGTTGACATTACCGGGCCTCATCTGCATACCATATACCCACACGGTTCCACTG 497
| ||||||||||| || || || || ||||||||||| ||||||||||||||||| ||||
Sbjct 534 TCGGTGGAGTTGATATCACTGGTCCACATCTGCATACTATATACCCACACGGTTCAACTG 593
Query 498 ATACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTGAAG 557
| ||||| ||||| || ||||||||||| ||||| |||||||| ||||| |||||||| |
Sbjct 594 ACACTCTTCCATTCGCCACAATGGGTTCGGGTTCTCTTGCTGCTATGTCTGTGTTTGAGG 653
Query 558 CAAAGTATAAAGAAGGTCTAACTAGAGACGAAGGAATCAAGTTGGTTGCTGAAGCCATAT 617
|||||||||||||||| |||||||| || |||||||| ||| |||| |||||| ||||||
Sbjct 654 CAAAGTATAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGCTGGTCGCTGAATCCATAT 713
Query 618 GCTCTGGTATATTTAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCACTA 677
|||| |||||||| || ||||| |||||||||||||| ||||| ||||| |||||||| |
Sbjct 714 GCTCGGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTGGACATCTGCGTGATCACAA 773
Query 678 AGGGGCACAAGGAATA-CTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTAGC 736
||||| |||||||||| || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 774 AGGGGAACAAGGAATATCTC-AGGAACTACATGGAACCAAACCCAAGAACCTATGTCAGC 832
Query 737 AGCAAAGGCTATTCATTCACCAAGAAAACTGAGGTTCTACTCACCAAAATTACACCATTA 796
|||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 833 AGCAAAGGCTATTCCTTCACCAAGAAAACTGAGGTTCTTCTCACCAAAATCACCCCATTG 892
Query 797 -TCGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGAAT 849
| ||||||||||||||| |||||| |||||||||||||||||||| |||
Sbjct 893 CT-GGAGCGAGTCGAAATCACAGAAGT---TGGTGAAGCTATGGAGGAAT-AAT 941
> AT2G14475.1 | Symbols: | pseudogene, similar to putative beta
proteasome subunit, blastp match of 64% identity and 2.7e-16
P-value to GP|14594921|emb|CAC43321.1||AJ291736 putative
beta proteasome subunit {Nicotiana tabacum} | chr2:6163928-6164963
REVERSE LENGTH=1036
Length=1036
Score = 180 bits (97), Expect = 3e-44
Identities = 103/106 (97%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 165 AGGATGGTGTGATACTTGGGGCTGATACACGGGCAACTGAAGGGCCTATTGTGGCTGATA 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 259 AGGATGGTGTGATACTTGGGGCTGATACACGGGCAACTGAAGGGCCTATTGTTGCTGATA 318
Query 225 AGAACTGTGAGAAGATTCACTACATGGCACCAAACATTTATTGTTG 270
||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 319 AGAACTGTGGGAAGATTCACTACATGGCACCAAACATTTACTGTTG 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5