BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493929
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40560.1 | Symbols: DegP13 | DegP protease 13 | chr5:1624454... 1247 0.0
> AT5G40560.1 | Symbols: DegP13 | DegP protease 13 | chr5:16244543-16246519
FORWARD LENGTH=1233
Length=1233
Score = 1247 bits (675), Expect = 0.0
Identities = 763/807 (95%), Gaps = 0/807 (0%)
Strand=Plus/Plus
Query 1 ATGATTATTACAAACGCTCATGTGGTGGATAATCACATATTGGTGCTAGTCATAAAGCAT 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1 ATGATTATTACAAACGCTCATGTGGTGGCTAATCACATATTGGTGCTAGTCATAAAGCGT 60
Query 61 GGCTCACCAAAGAAGTACAAAGCAGAAGTTAAAGCTATCGGGCATGACTGTGATTTGGCT 120
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 61 GGCTCACCAAAGAAGTACAAAGCAGAAGTTAAAGCTATTGGGCGTGAATGTGATTTGGCT 120
Query 121 ATTTTGGTGATCGAAAGCAAAGAGTTTTGGGAAGATATGAATCCTTTGGAGCTTGGAGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTTTGGTGATCGAAAGCAAAGAGTTTTGGGAAGATATGAATCCTTTGGAGCTTGGAGAC 180
Query 181 ATGCCCTTTTTGCAACAATCAGTAAATGTTATTGGCTATCCAAAAGGTGGTGAGAGTATC 240
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 181 ATGCCCTTTTTGCAAGAATCAGTAAATGTTATTGGCTATCCAACAGGTGGTGAGAATATC 240
Query 241 TCCGTTACAAAAGGTGTTGTGTCTAGAATCGAGTCAAAAGATTATGTTCAAGGTGCCACT 300
||||||||||||||||||||||||||||| || |||| ||||||| ||| ||||||| |
Sbjct 241 TCCGTTACAAAAGGTGTTGTGTCTAGAATAGAATCAATGGATTATGCTCACGGTGCCATT 300
Query 301 AATCTACCGGTACTACAAACAGATGCAGCAATTAACTCTGGAAATAGTGGTGGTCCGGTT 360
|||||||||| | ||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 301 AATCTACCGGCAATACAAACAGATGCAGCAATGAACCCTGGCAATAGTGGTGGTCCGGTT 360
Query 361 TGCATAGGAAACAAAGTTGTTGGTGTAGCATTTCAAACTCTTAGACATTCTAATAACATA 420
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 361 TGCATAGGAAACAAAGTTGTTGGTGTAGCATTTCAAACCCTTGGACATTCTAATAACATA 420
Query 421 GGGTACTTAATCCCAGCTCCAGTGGTTAAACATTTTATAACCATTGTTGAAAAATCCGGT 480
|||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 421 GGGTGCTTAATCCCAGCTCCAGTGGTTAAACATTTTATAACCGGTGTTGAAAAAACCGGT 480
Query 481 CGATACGTTGGTTTCTGCTCGCTGAATCTATCATACCAACCTATGGATGCACATTTTCGT 540
| ||||||||| ||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 481 CAATACGTTGGCTTCTGCTCGCTAAATCTATCATACCAACATATGGATGCACAAACTCGT 540
Query 541 AGTCATTTTAAGATGAATTCTGAAATGACAGGGATTCTTATATACAATATTAATCAACAT 600
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 541 AGTCATTTTAAGATGAATTCTGAGATGACAGGGATCCTTATATACAATATTAATCAACAT 600
Query 601 TCGGATGCTCTCAATATTCTTAAAAAATATGACGTTATTCTTGCAATCGATGGCGTTGCT 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 TCGGATGCTCTCAATATTCTTAAAAAATATGACGTTATTCTTTCAATCGATGGCGTTGCT 660
Query 661 ATAGAAAATGATGGTACAGTTATTTTACCAAATAGAGAAAGGATAAGGTTGGATGATTTG 720
|||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 661 ATAGAAAATGATGGTACAGTTATTATACCAAACAGAGAAAGGACAAGGTTGGATGATTTG 720
Query 721 GTTTCTATGAAGCAATTTGGTGAAACAATCTTACTTAAAATTTTAAGAGATGGAAAAATG 780
|||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 GTTTCTTTGAAGCAATTAGGTGAAACAATCTTACTTAAAATTTTAAGAGAGGGAAAAATG 780
Query 781 CATGAGTTCAATATTACTCTAAAGCCA 807
|||||||||||||||||||| | ||||
Sbjct 781 CATGAGTTCAATATTACTCTGAGGCCA 807
Score = 207 bits (112), Expect = 1e-52
Identities = 142/157 (90%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 882 GCTAGAATTAGGAGATGGTCGAGTTATAATCTTGGATTATCAGTCGGCGAAAAGTTCTAC 941
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 1077 GCTAGAATTAGGAGATGGTCGAGTAATAATCTTGGATTATCAGTTTGCGAAAAGTTCCAC 1136
Query 942 TTCTTTGATTTTGGAACGTCATAGAGTACCATCGGCAATGTCCAAAGATCTCATGATTGA 1001
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 1137 TTCTTTGATTTTGGAACGTCATAGAGTACCATGGGCCATGTCCAAAGATCTCATGACTGA 1196
Query 1002 ACAATCCAAGGCATGTTTGAGTACGAAATTATATTAA 1038
||||| | | |||| |||||||| ||||||||||
Sbjct 1197 TCAATCGACCACTTGTTCGAGTACGAGATTATATTAA 1233
Score = 84.2 bits (45), Expect = 2e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 838 GTGAACAGCGTCAACAAAGTGAAGGTGGAGAATCTAAAGCATTTG 882
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 GTGAACAGCGTCAACAAAGTGAAGGTGGAGAATCTAAAGCATTTG 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5