BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493934
Length=2325
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40520.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3432 0.0
> AT5G40520.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 11 growth stages; Has
3696 Blast hits to 2485 proteins in 391 species: Archae - 10;
Bacteria - 571; Metazoa - 1013; Fungi - 530; Plants - 217;
Viruses - 74; Other Eukaryotes - 1281 (source: NCBI BLink).
| chr5:16231254-16234316 REVERSE LENGTH=2383
Length=2383
Score = 3432 bits (1858), Expect = 0.0
Identities = 2205/2367 (93%), Gaps = 46/2367 (2%)
Strand=Plus/Plus
Query 1 AGTCGATTCCAATTCCTTGAAGAAGATGGCAATGGATGATAATTCAGTTTTCTTCAAGAC 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 16 AGTCGATTCCAATTCCTTGAAGAAGATGGCAATGGATAATAATTCAGTTTTCTTCAAGAC 75
Query 61 TGATTGTGCTTCTATACTTTCACAGATTAAGGATCATGATAAGCAGATTCGTCTCAAAAG 120
||||| || ||| ||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct 76 TGATTTTGGTTCGATACTTTCACAGATTAAGGATCAAGATGAGCAAATTCGTCTCAAAAG 135
Query 121 AAGGTGGCTGTTGGGTTGTGATATGTCTGAAT---CCAAGGACAATACTCCGGGAAAGAC 177
||||||||| |||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 136 AAGGTGGCTTTTGGGTTGTGATATGTCTGACTCCACCAAGGACCATACTCCGGGAAAGAC 195
Query 178 TGAATTCGTCCCTGAATCTTTGCTCAGGGAAGATGATGTATTCTACGAGACCATAAAGTC 237
|||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct 196 TGAATTCGTCCCTGAATCTTTGCTTAGGGAAGATGATATATTCTACGAGACGATAAAGTC 255
Query 238 GCGTGTACAAGAGGCATTTGGATTTTGCAAGAATGAACAAGTACTATGTAATGATGTTCA 297
||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 256 GCGTGTAGAAGAGGCATTTGGATTTTGCAAGAATCAACAAGTAGTATGCAATGATGTTCA 315
Query 298 ACAAAAGGAGTTAAAGTTCTGCAATCTCGAACTTGTTAGAAAGCTTGATTCTTTGACGAA 357
||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 316 ACAGAAGGAGTTAAAGTTCTGCGATCTTGAACTTGTTAGAAAGCTTGATTCTTTGACGAA 375
Query 358 TAAAGGTCTTTATCTTATTGCAATGATACTCACAGGAGGCTCTACTTCGTTTGACAAGAC 417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 376 TAAAGGTCTTTATCTTATTGCAATGATACTCACAGGAGGCTCTACTTCCTTTGACAAGAC 435
Query 418 TCGATGGAAAATGAAAGAGATTATCAGAGATTCTGTCAGTAGAGACTTTGGAAAGAATAA 477
||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 436 TCGATTGAAAATGAAAGAGATTATCAGAGATTCGGTCAGGAGAGACTTCGGAAAGAATAA 495
Query 478 AGACGGTATTGGTAAAGAAGACATTATTAATCAGCTGCATCAAGTTCTTAGTGATCCCGC 537
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 496 AGAAGGTATTGGTAAAGAAGAGATTATTAATCAGCTCCATCAAGTTCTTAGTGATCCCGC 555
Query 538 AAATTTCCGGGAAGATTGCAGGATGAATTTGGGGAGAACACCTACTCTGCATTCCCATCG 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 556 AAATTTCCGGGAAGATTGCAGGATGAATTTGGGGAGAACACCTACTCTTCATTCCCATCG 615
Query 598 TGATGCTGCATTGAAGGTACTTAATGAGCTAGATGGTTTGTCGACTCAGACCCTACGTGC 657
|||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 616 TGATGCTGCAATGAAGGTACTTAATGAGCTAGATAGTTTGTCTACTCAGACCCTACGTGC 675
Query 658 GATGAAAAGGAAACTTAAAGGTTCAAGAATGATACCTCAACTGAAAACCAGTAGATTTGG 717
||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 676 AATGAAAAGGAAACTTAAAGGTTCAAGAATGATACCTCAATTGAAAAATAGTAGACGTGG 735
Query 718 TCAGAGTCGAAGTGATCTGATTAACCAAGTGAGGCAAGCTAGCGAGAAGATGCTCTCAGA 777
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TCAGCGTCGAAGTGATCTGATTAACCAAGTGAGGCAAGCTAGCGAGAAGATGCTCTCAGA 795
Query 778 ACTTTCTGCAGGGGGTAAACTGCAGGAGCAATTGGCTAAAGCGTTGTCAGTAGTAGATTT 837
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 ACTTTCTGCAGGGGATAAACTGCAGGAGCAATTGGCTAAAGCGTTGTCAGTAGTAGATTT 855
Query 838 ATCACTTAAGCTAAGTCCTGGCTACAAAACTGCTGCTGCCACAGAATTTTTTCGGTTCTC 897
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 856 ATCACTTAAGCTAAGTCCTGGCTACAAAACTGCTGCTGCCACAGATTTTTTTCGGTTCTC 915
Query 898 GCCAGAAACAAAGAACTTGCAGAACGAGATAGTGAAGGCAGTATGGTTACTCCGTAAGGT 957
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 ACCAGAAACAAAGAACCTGCAGAACGAGATAGTGAAGGCAGTATGGTTACTCCGTAAGGT 975
Query 958 CAGGTTTCGTGAGCTGAAAAGACTGCATCTTTGTTTAGACCCAGAAGCTGAAGTGTCTAA 1017
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 976 TAGGTTTCGTGAGCTGAAAAGATTGCATCTTTGTTTAGACCCAGAAGCTGAAGTTTCTAA 1035
Query 1018 TGACAGCTTAAGATCAGCAGTCAGAAAAATGTTGATTGAATATCTGTTTGAGTGCAGTGA 1077
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1036 TGACAGCTTAAGATCAGCGGTCAGAAAAACGTTGATTGAATATCTGTTTGAGTGCAGTGA 1095
Query 1078 TATGGACACCATTCCAAAGTCTTTAATGGAAGCTCTTTCATTGGTCAACAGGAGGACGCG 1137
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1096 TCTGGACACCATTCCAAAGTCTTTAATGGAAGCTCTTTCATTGGTCAACAGCAGGACGGG 1155
Query 1138 TAATGTAGAGCATAAGGTATGTCCAAGGGAAGCAATTGATGAAGAGACAGAGTGTATATT 1197
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1156 GAATGTAGAGCATAAGGTATGTCCAAGGGAAGCAATTGAGGAGGAGACAGAGTGTATATT 1215
Query 1198 AAATGTGAGTGCTCAAGTGAAGCAAATATTTTGCCAATGTATTCCAAATTATGAACTCGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AAATGTGAGTGCTCAAGTGAAGCAAATATTTTGCCAATGTATTCCAAATTATGAACTCGA 1275
Query 1258 TCAGGACTTCGGTGATGCTTATATGGAGGAGCTAGAAGACAGtgatgataatgatgatga 1317
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1276 TCAGGACTTCGGTGATGCTTATATGGAGGATCTAGAAGACAGTGATGATAATGATGATGA 1335
Query 1318 tgatgGTG--G--G--GAT--TG-T-AGA-TT--A-TTT----GATAATGAGAAATTTGT 1359
||||| || | | ||| || | ||| || | ||| ||||| |||||||| |
Sbjct 1336 TGATGATGATGATGATGATGATGATGAGAATTGTAATTTATTTGATAACGAGAAATTAGG 1395
Query 1360 TAAT---GAAGAGAGTAGATGCCGAAACATAAAGCTTGAAGTGAAAAACTCTCAAGACGA 1416
|||| ||||||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 1396 TAATAAAGAAGAGAGTAGATGCCGAAACATAAAGCTTGAAGTCAAAGACACTCAAGACGA 1455
Query 1417 TGCAATGGAGTCCTCTGATTCGGATCATGAAGAAAGTGGTGCTGAATGCTTGATTTTGGA 1476
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1456 TGCAATGGAGTCCTCTGATTCGGATCATGAAGAAAGTGGTGCAGAATGCTTGGTTTTGGA 1515
Query 1477 CCCGACTGATTCTACACAC-ACAACCAACCAGCATGATTTCAGCTCTTCTGTCAATAGGG 1535
|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 1516 CCCGACTGATTCTACACATGA-AACAAACCAGCATGATTTCAGCTCTTCTGTCAATAGGG 1574
Query 1536 TAGTTGTAAGAGACCTGCCAGAGAGTATTACAAGAGT-TCATCCTAGGCCTCTCTATGTC 1594
| ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 1575 TGGTTGTAAGAGACCTGCCAGAGAGTATTACAAGAGTCT-ATCCTAGATCTCTCTATGTC 1633
Query 1595 ACTCCCACGTCCAATAAATCAACAGTTATCAGTGATAGACATGACATTGGTACGAGCAAA 1654
|||||||||||||||||||||| |||||||||||||||||||||||| | || |||||||
Sbjct 1634 ACTCCCACGTCCAATAAATCAATAGTTATCAGTGATAGACATGACATAGCTATGAGCAAA 1693
Query 1655 ACCCGGGTCAAGGTTGAGAGGGATATTGAGATGGAAGTAGATAACCAGTTTAGCTCACGG 1714
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1694 ACCCGAGTCAAGGTTGAGAGGGATATTGAGATGGAAGTAGATAATCAGTTTAGCTCTCGG 1753
Query 1715 TCATTGTTTTCTGTTGAAAACATAAAGTCTGATGATCATGGTGAGCAGAAGCCACAAAGA 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1754 TCATTGTTTTCTGTTGAAAACATAAAGTCTGATGATCATGGTGAGCAGAAGCCACGAAGA 1813
Query 1775 AGACATAAAAACCAGTACCTCGCAGTCCAAGAAATTTCTGATGAGACAAGCTTGGTTGCA 1834
||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1814 AGAAATAAAAACCAGTACCTAGCAATCCAAGAAATTTCTGATGAGACAAGCTTGGTTGCA 1873
Query 1835 CATAAGCTAATCGGCCGCTTGCTAGAGAAATTTGCAGACCGTCAAGGTCTAAACTTAGAA 1894
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1874 CATAACCTAATCGGCCGCTTGCTAGAGAAATTTGCAGACCGTCAACGTCTAAACTTAGAA 1933
Query 1895 ACGGATGAACGTTCATATATTAGAGGCGAATCCAGGCTTCAAGAAGATGTAGAAGTGAAT 1954
|||||||||||||||||| || |||| |||||||||||||||||| | |||||||||| |
Sbjct 1934 ACGGATGAACGTTCATATCTTGGAGGTGAATCCAGGCTTCAAGAAAAAGTAGAAGTGAGT 1993
Query 1955 GGAGAAAAGCAAGCTTCATCTCAAGCGAAGTCAGATGAGTCGATCATTGTTTCTGTTATC 2014
| | |||||||||||||||| || ||||||||||||||| |||||||| |||| ||| ||
Sbjct 1994 GAAAAAAAGCAAGCTTCATCGCAGGCGAAGTCAGATGAGGCGATCATTCTTTCAGTTGTC 2053
Query 2015 AAAGAGCAAATGCCATCCCTTGAAGAGAGTGTCTTGATGAGATTAAAAGAGTTGATGGAA 2074
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2054 AAAGAGCAAATAACGTCCCTAGAAGAGAGTGTCTTGATGAGATTAAAAGAGTTGATGGAA 2113
Query 2075 GTGAGCTAGCATCAGCAAAGTTATAATCTTTCCTACCAAAGTGAAGTAGCAATGGAATGA 2134
|||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
Sbjct 2114 GTGAGCTAGCATCAGCAAAGTTATAACCTTTCCTGCCTAAGTGAAGTAGCAATGGAATCA 2173
Query 2135 AGAGAGAAACAACAAAGGATATTGAGATGAACACAACAAGGGATACGATTTTGCATTACA 2194
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2174 AGAGAGAATCGGCAAAGGATATTGAGATGAACACAACAAGGAATACGATTTTGCATCACA 2233
Query 2195 TTGTATTGATTTTTACTTGATTCTCAA----------G--AAGAACTTAA-AGTG-ATCT 2240
||||||| ||||||||||| ||||||| | |||||||||| |||| | ||
Sbjct 2234 TTGTATTCATTTTTACTTGGTTCTCAATCCCCCTTTAGGGAAGAACTTAAGAGTGTA-CT 2292
Query 2241 TAtttttttCTTTATATGA-AAGGTGATCTTTGCCGTACATTGATCGTCAGCAT-AGTTG 2298
|||||||||||||||||| ||| ||||||||||| |||||||||||||||||| | |||
Sbjct 2293 CATTTTTTTCTTTATATGATAAGATGATCTTTGCCATACATTGATCGTCAGCATTA-TTG 2351
Query 2299 TCCCTGATCAAACGAAGGTTGTTGGTG 2325
||||| ||| |||||||||||||||||
Sbjct 2352 TCCCTTATCGAACGAAGGTTGTTGGTG 2378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115411052955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5