BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493935
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40510.1 | Symbols: | Sucrase/ferredoxin-like family protei... 2010 0.0
AT3G27570.1 | Symbols: | Sucrase/ferredoxin-like family protei... 451 7e-126
> AT5G40510.1 | Symbols: | Sucrase/ferredoxin-like family protein
| chr5:16229188-16231098 FORWARD LENGTH=1391
Length=1391
Score = 2010 bits (1088), Expect = 0.0
Identities = 1275/1364 (93%), Gaps = 17/1364 (1%)
Strand=Plus/Plus
Query 1 TTTTGATTACTTCCATTTCCTCAAAAGTCAAAACTCTC--T-TTCTCTCTC--GATTTGC 55
|||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||
Sbjct 20 TTTTGATTACTTCCATTTCCTCAAAAGTCAAAGCTCTCTTTCTTCTCTCTCGAGATTTGC 79
Query 56 TAACTTGTCAATGGCGGAAGTCGAGAATCTGAACTCTGTTCCGGCGTCGGAAGACACCGA 115
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 80 TAACTTGTCAATGGCGGATGTTGAGAATCTGAACTCTGTTCCGGCGTCGGAAGACACAGA 139
Query 116 GTATGGCTTTAAACGGCCGGAGATGTACAGCACAAACATCGCCAATTCTATAACATCTTA 175
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 140 GTATGGATTTAAACGGCCGGAGATGTACAGCACAAACATAGCCAATTCCATAACTTCCTA 199
Query 176 TGATCGTCATGTTTTTGTTCTTTATAAGACTCCTGAAGCTTGGCTCTCACATGTTGAAGA 235
| ||||||||||||||||||||| || |||||||||||||||||||| || || |||||
Sbjct 200 CGCTCGTCATGTTTTTGTTCTTTACAAAACTCCTGAAGCTTGGCTCTCTCACGTCGAAGA 259
Query 236 AGAAGGTTTACCTCAACGTTTCGCTACGTTGCTTAAAGATCGAAAATCTGATCTTCTTGT 295
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 260 AGAAGGTTTACCTCAACGTTTCGCTACGTTGCTTAAAGATCGCAAATCTGATCTTCTTGT 319
Query 296 TCAGACGAAGCTTAATGTATGTGAAGGTGGTGGATCTGATGGTGATGTGTTGATCTTTCC 355
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 320 TCAGACGAAGCTCAATGTATGTGAAGGTGGTGGATCTGACGGTGATGTTTTGATTTTTCC 379
Query 356 GGATATGATCAGATACAAGGGGGTTAAGGATACGGATGTGGAAGGGTTT-TTTGAAGATG 414
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 380 CGATATGATCAGATACAAGGGGGTTAAGGATACGGATGTGGAA-GGTTTCTTTGAAGATG 438
Query 415 TTCTTGTGAATGGGAAGCCATGGAGTTCTGGGATACAAGAAGAGATATCTGGAACATTTG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TTCTTGTGAATGGGAAGCCATGGAGTTCTGGGATACAAGAAGAGATATCTGGAACATTTG 498
Query 475 TATTTGTGTGTACTCATGCTAGTCGAGACAAGAGATGTGGTGTTTGTGGACCAGTCATCT 534
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 499 TATTTGTGTGTACTCATGCTAGTCGTGACAAGAGATGTGGTGTTTGTGGACCAGTGATCT 558
Query 535 TAGAGAGGTTCAAGCAGGAGATAGGTTCTCGTGGACTCTCGGACCAGATTACGCTGAAAC 594
| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 559 TGGAGAGGTTTAAGCAAGAGATTGGTTCTCGAGGACTGTCGGACCAGATTACACTGAAAC 618
Query 595 GATGTTCTCACGTTGGACAGCACAAGTATGCTGGTAATTTGATTATCTTCAGTCCTGATT 654
| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 619 GTTGTTCTCATGTTGGACAGCACAAGTATGCTGGTAATTTGATCATCTTCTGTCCTGATT 678
Query 655 CAGCTGGAAAGATTACTGGCAATTGGTATGGCTATGTAACTCCTGATGATGTACCTGAAT 714
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 679 CAGCTGGAAAGATTACTGGCAATTGGTATGGCTATGTAACACCTGATGATGTACCTGAAT 738
Query 715 TGCTTGACCAACATATTGCAAAAGGAGAAATCATACAAAGGATTTGGAGGGGCCAGATGG 774
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 739 TGCTTGATCAACATATTGCAAAAGGAGAAATCATACAAAGGATTTGGAGGGGGCAAATGG 798
Query 775 GACTACCTGGAGGTGAAGCTGAGAAACTGCATGAACAGAAAGTGATACCAAACGGTAACG 834
| |||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |||
Sbjct 799 GTCTACCTGGAGGTGAAGCTGAGAAAGTGCATGAACAGAAAGTTATACCAAATGGTCACG 858
Query 835 ATGTAGTGAAAGAGGAGAGCAAAGGGTTCACAGGAGGATGTTGTCAGGGATCGAACGGAG 894
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 859 GTGTAGTGAAAGAGGAGAGCAAAGGATTCACAGGAGGATGTTGTCAGGGATCAAACGGTG 918
Query 895 TTTCGTGTTGCCAAGACGAAACCCCCAAGCCAGAGCCAATTAAGAAAGAAGGaaaaaaaT 954
|||||||||||||||||||||| || |||||||||||||| |||||||||| |||||| |
Sbjct 919 TTTCGTGTTGCCAAGACGAAACTCCAAAGCCAGAGCCAATCAAGAAAGAAGTAAAAAAGT 978
Query 955 GTACCATATGGTTCCAGCCTCTTGACAAAGACGAGTTTTACATTGGAGCCGCTGTGGTTG 1014
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 979 GTACCATATGGTTCCAGCCTCTTGACAAAGAAGAGCTTTACATTGGAGCTGCTGTGGTTG 1038
Query 1015 GAGCCATTGCAACTATAGCCGTGGCTTGCACCTTTTTCAAGAGGTCACGGT-AAGAACCT 1073
|||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1039 GAGCCATTGCAACTATAGCCATGGCTTTCACCTTTTTCAAGAGGTCA-GGTTAAGAACCT 1097
Query 1074 AACCTTACTTACTTACCAATAGAAGTTTCTTC-TTGGAGATTGCCACGAGACAATAGAAA 1132
|||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 1098 AACCTTACTTACTTACCAATAGAAGTTT-TTCCTTGGAGATTGCCATGAGACAATAGAAA 1156
Query 1133 ATGAATACATCCATTGATTCCACCACAAAACAGAACCGAAGAATTATGTTTTTGTCTGTG 1192
| ||| || ||||||||||| |||||||||||||| ||||||||||||||||||||| ||
Sbjct 1157 AAGAAAACCTCCATTGATTCGACCACAAAACAGAAGCGAAGAATTATGTTTTTGTCTTTG 1216
Query 1193 ATTCTACAATTAAAGAAAGAAACATATAAACTCTCTGGTTTCTGTGAGCGtttttttGCC 1252
||| ||| |||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1217 ATTTTACCATTAAAGAAA----CATATAAACTTTTTGGTTTCTGTGAGCGTTTTTTTGCC 1272
Query 1253 TTGCTATCTTCTCACATT--GTGTTTTTGTTGTAATGGCCATAACTTTTGTGATTGGCCT 1310
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1273 TTGCTATCTTCTCACATTATGTGTTTTTGTTGTAATGGCCATAACTTCTGTGATTGGTCT 1332
Query 1311 AAGCTCTCTCACTTTGGTGCATTAACAAAACTTTGATTTGGTTT 1354
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAACTCTCTCACTTTGGTGCATTAACAAAACTTTGATTTGGTTT 1376
> AT3G27570.1 | Symbols: | Sucrase/ferredoxin-like family protein
| chr3:10213996-10216736 REVERSE LENGTH=1475
Length=1475
Score = 451 bits (244), Expect = 7e-126
Identities = 607/773 (79%), Gaps = 61/773 (8%)
Strand=Plus/Plus
Query 179 TCGTCATGTTTTTGTTCT-TTATAAGACTCCTGAAG-CTTGGC-TCTCACATGTTGAAGA 235
|||||||||||| || | ||| |||| || || || |||||| || | | ||||||| |
Sbjct 292 TCGTCATGTTTTCCTT-TGTTACAAGAGTCATG-AGACTTGGCTTC-CTCGTGTTGAA-A 347
Query 236 -AGAAGG-TTTACCTCAACGTTTCGCTACGTTGCTTAAAGATCGAAAATCTGATCTTC-T 292
||||| || ||||| |||||||| | |||| |||| ||||| ||| ||||| |||
Sbjct 348 CTGAAGGACTT-CCTCAGCGTTTCGCGAAGTTGTTTAAGGATCGTAAAGCTGAT-TTCGC 405
Query 293 TGTTCAGACGAAGCTTA--ATGTAT-GTGAAGGTGGTGGATCTGATGGTGATGTGTTGAT 349
|||| |||||||||||| ||| | ||| ||||||| ||||||||| |||||||||||
Sbjct 406 TGTTGAGACGAAGCTTACGGTGTGTGGTGGTGGTGGTGAATCTGATGGAGATGTGTTGAT 465
Query 350 CTTT-CCGGATATGATCAGATACAAGGGGGTTAAGGATACGGATGTGGAAGGGTTTT-TT 407
||| ||||| ||| | |||||||||| | || |||| || ||||||| | | |||| |
Sbjct 466 -TTTCCCGGAGATGGTTAGATACAAGGCGATTCAGGACACAGATGTGG-ATGCTTTTGTG 523
Query 408 GAAGATGTTCTTGTGAATGGGAAGCCATGGAGTTCTGGGATACAAGAAGAGAT-ATCTGG 466
|||||||| |||||||| || || |||||| ||||||||| || |||||| | | ||||
Sbjct 524 GAAGATGTGCTTGTGAAAGGAAAAACATGGACTTCTGGGATTCAGGAAGAGTTGA-CTGG 582
Query 467 AACATTTGTATTTGTGTGTACTCATGCTAGTCGAGACAAGAGATGTGGTGTTTGTGGACC 526
| ||||| |||||||| |||||| ||| |||||||||||||||||||||||||||||
Sbjct 583 TTCCTTTGTGTTTGTGTGCGCTCATGGTAGCCGAGACAAGAGATGTGGTGTTTGTGGACC 642
Query 527 AGTCATCTTA-G-AGAGGTTCAAGCAGGAGATAGGTTCTCGTGGACTCTCGGACCAGAT- 583
||| ||||| | ||| |||| ||||||||||| |||| |||||||| || ||| | ||
Sbjct 643 AGT--TCTTATGGAGAAGTTCGAGCAGGAGATAAGTTCACGTGGACTTTCAGACAAAATC 700
Query 584 TACGCTGAAACGATGTTCTCACGTTGGACAGCACAAGTATGCTGGTAATTTGATTATCTT 643
| | | || |||||||| | || ||||||||||||||| ||||||||| ||||
Sbjct 701 TTTGTTTTGCCG-TGTTCTCATATCGGTGGGCACAAGTATGCTGGAAATTTGATTGTCTT 759
Query 644 CAGTCCTGATTCAGCTGGAAA-GATTACTGGCAATTGGTATGGCTATGTAACTCCTGATG 702
||| ||||||||||||||||| | || ||||| |||||||||||||||| ||||||||||
Sbjct 760 CAGCCCTGATTCAGCTGGAAATGTTT-CTGGCCATTGGTATGGCTATGTGACTCCTGATG 818
Query 703 ATGTACCTG-AATTGCTTGACCAACATATTGCAAAAGGAGAAATCATACAAAGGATTTGG 761
| || |||| ||| |||||| || ||||||||||||||||||||||| |||| |||
Sbjct 819 ACGTGCCTGCAAT-GCTTGATCAGCATATTGCAAAAGGAGAAATCATTCAAAACCTTTCC 877
Query 762 AGGGGCCAGATGGGACTA---CCTGGAGG-TGA--A-GCTGAGAAACTGCATGAACAGAA 814
|| ||||||||| ||||| || | ||| ||| | ||||||||| | |||| || ||
Sbjct 878 AGAGGCCAGATGAGACTAAGACCCG-AGGGTGAGGAAGCTGAGAAAGAGGATGAGCATAA 936
Query 815 AGTGATACCAAACGGTAAC-GATGTA--G-TGAAAGA--G-GA----G---AGCA-AA-G 858
| || |||||||| ||| | |||| | || |||| | || | |||| || |
Sbjct 937 A---ATCCCAAACGGAAACAG-TGTAATGGTGGAAGAACGCGAACCTGTGGAGCAGAAAG 992
Query 859 GGTTCACAGGAGGATGTTGTCAGGGAT-CGAACGGAGTTTCGTGTTGCCAAGA 910
||||||||||||| ||||| || || | | ||||||||||| |||||||||||
Sbjct 993 GGTTCACAGGAGGTTGTTGCCAAGG-TGCAAACGGAGTTTCATGTTGCCAAGA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5