BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493940
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40470.1 | Symbols: | RNI-like superfamily protein | chr5:1... 2254 0.0
> AT5G40470.1 | Symbols: | RNI-like superfamily protein | chr5:16208009-16209897
REVERSE LENGTH=1889
Length=1889
Score = 2254 bits (1220), Expect = 0.0
Identities = 1444/1549 (93%), Gaps = 27/1549 (2%)
Strand=Plus/Plus
Query 89 ATCCTTCTTTCATCTTCTTTCGATTTCTCCaaaaaaaTGGAAGAAATTTTATTCGATGAG 148
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ATCCTTCTTTCATCGTCTTTCGATTTCTCCAAAAAAATGGAAGAAATTTTATTCGATGAG 176
Query 149 ATTCTCTGCGAGATATTCACAAGATTGCCGTCGTCTTCTTCTTCTTC--C-TCAAT-ATC 204
||||||||||||||||| |||||| |||| ||||||||||||||||| | || | |||
Sbjct 177 ATTCTCTGCGAGATATTTACAAGACTGCCATCGTCTTCTTCTTCTTCTTCTTC-CTCATC 235
Query 205 ATCTTCTTTACCTTCTTTCGAATCGGTTCCTCTTGTCTCAAAGCGATGGCTTCGTCTCTA 264
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 ATCTTCGTTACCTTCTTTCGAATCGGTTCCTCTTGTCTCAAAACGATGGCTTCGTCTCTA 295
Query 265 CAGAGCATCAAAGACTTCCATGTCTTTAAAACTCAGTCCTCACGACACCTCTGTAATTAC 324
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 296 CAGAGCATCAAAGACTTCCATGTCCTTACAATTCAGTCCTCACGACACCTCTGTAATTAC 355
Query 325 CCATTTACCCTCTGTCCTCAATAACCATCCTtctctctcttccctctctttctctcGCGG 384
|| ||| |||||| ||||||| |||||||||| |||||||||||||||| ||| ||||||
Sbjct 356 CCTTTTGCCCTCTATCCTCAACAACCATCCTTGTCTCTCTTCCCTCTCTATCTATCGCGG 415
Query 385 CTTCACCATTAACACCAAAATCATCACAACCCCAATTCGTTCGGATGTTGAGTC-TCTGA 443
| | |||| | | || | | ||||||| ||||||||||| ||| | |||||
Sbjct 416 CGTAACCA-T---A--GGAA-C-T----ACCCCAAGTCGTTCGGATGAGGAG-CATCTGA 462
Query 444 AAGCTGAAACCATTTTCAACGAAGAGCTAATCTCAATCATATCTTCTTGCTGCTTTAATC 503
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 463 AAGCTGAAACCATTTTCAGCGACGAGCTAATCTCAATCATATCTTCTTGCTGCTTCAATC 522
Query 504 TCAGAAGTCTCAGTTTCTTGATCAATCCAGTttcttcatcttctttagttcctctctcta 563
|||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 523 TCAGAAACCTCTGTTTCTTGATCAATCCAGTTTCTTCATCTTCTTTGGTTCCTCTCTCTA 582
Query 564 cttctttatctctcacttctctctctATCGAAGTGTGGAAACCACAAAACTCAGGTTTCA 623
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 583 CTTCTTTATCTCTCACTTCTCTCTCTATCGAATTATGGAAACCACAAAACTCAGGTTTCA 642
Query 624 CTTGGATTGCTCTGTTTTCATCTCTTAAAGAATTATCAATCCATGTTTGTTCAACGAGTT 683
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 643 CTTGGATTGCTCTGTTTTCATCTCTTAAAGAATTATCAATCCATGTTTGCTCAACGAGTT 702
Query 684 CTCCAGCTTTCGATTTCTATCCAAAGTCTAAACCTAACCCGGAAGTTTTAGAATTAGGTT 743
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 703 CTCCAGCTTTCGATTTCTATCCAAAGTCTAAACCTAACCCGGAAGTTGTAGAGTTAGGTT 762
Query 744 TGGAATCGATTTCTTTATTTGGAATCGAACCTGATGATAATGATGTTACTTGGTTATGGA 803
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 763 TGGAATCGGTTTCTTTATTTGGAATCCAACCTGATGATAATGATGTTACTTGGTTATGGA 822
Query 804 AATGTTGCAGAAAGGTAAAGAAACTGAGTCTGAGATCTTGTGGAAGCATTGGAGAAATCG 863
|| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 823 AAAGTTGCAGAAAGTTAAAGAAACTGAGTCTGAGATCTTGTGGAAGTATTGGAG-AA--G 879
Query 864 AGTTTTTCGGTTTGTGTTTGGAGAATCTTGAAGAGATTGAGTTGAGAACATGTAGGAGTA 923
| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 880 A---AATCGGTTTGTGTTTGAAGAATCTTGAAGAGATTGAGTTAAGAACATGTAGGAGTA 936
Query 924 TTGTTGATGTGGTTCTGCTGAAAGTTTCAGAGATCTGTGAATCTTTGAAGTCTCTGTTGA 983
||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||
Sbjct 937 TTGTTGATGTGGTTCTGCTTAAAGTATCAGAGATTTGTGAATCTTTAAAGTCTCTGTTGA 996
Query 984 TACATGATGGTGGAAGCAAAGATGGGTTGGTT-TGTTTTATGAACAATGCTAGATGTTAT 1042
| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||
Sbjct 997 TTCATGATGGTGGAAGCAAAGATGGGTTGGTTCAG-TTTATGAGCAATGCTAGATGTTAT 1055
Query 1043 GATACTTTGGAAAGACTCGATTTGCGTCTACCGATGGATTTGACCGATGATCATCTAGTC 1102
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1056 GATACTTTGGAAAGACTCGATTTACGTCTACCGATGGATTTGACCGATGATCATTTAGTC 1115
Query 1103 TCTCTCGCTGCGAATTTCAAGTGTTTATCAAGTATTAGCCTTACAAGCTGTATCTTTGTG 1162
|||||||||||||||||||||||||| || | | |||| |||||||||||||||||||||
Sbjct 1116 TCTCTCGCTGCGAATTTCAAGTGTTTGTCGACTCTTAGGCTTACAAGCTGTATCTTTGTG 1175
Query 1163 ACTGGTTTTAGTCTAAAGGCATTAGCTTTAAGCTTTAGTTCGAGTCTTGAAGAGCTTTCT 1222
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1176 ACTGGTTTTAGTCTAAAGGCATTGGCTTTAAGCTTTAGTTCGAGTCTTGAAGAGCTTTCT 1235
Query 1223 TTGCTTAGCTGCAACGCGATTGAACGAGAGCGTGGTTTGTTGGCAACAATAGGACAGCAT 1282
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1236 TTGCTTAGCTGCAACGCGATTGAACGAGAGCGTGGTTTGTTGGCGACAATAGGACAGCAT 1295
Query 1283 TTGGGGAGATTAAGGAAGCTAGATTTGGCTCGGAACGAGTGGTTATTCGATAAAGAAGTC 1342
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1296 TTGGGGAGGTTAAGGAAGCTAGATTTGACTCGGAACGAGTGGTTATTCGATAAAGAGGTT 1355
Query 1343 GTTTCGATGTTAGCTTCCTGCAATGGTTTGGTTGAGGTTGTTTTGAGAGAGTGTAAGCAT 1402
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1356 GTTTCGATGTTAGCTTCTTGCAATGGTTTGGTTGAGGTTGTTTTGAGAGATTGTAAGCAT 1415
Query 1403 TTGACAGGTGCAGTGTTGGTTGCTTTGAACAAAAACTGTGTGAAGTTGAAGACTTTGGAC 1462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1416 TTGACAGGTGCAGTGTTGGTTGCTTTGAACAAAAACTGTGTGAAGTTGAAGACTTTAGAC 1475
Query 1463 ATTTTAAGTTGTCGATTGATTGAGCCTGATGATGTGGAGGGTTTTGTGATGAAGACACAA 1522
|||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1476 ATTTTAGGTTGTCGGTTGATTGAGCCTGATGATGTGGAGGGGTTTGTGATGAAGACACAA 1535
Query 1523 TGTTTAAAGAAGCTTGTGGTTGAAGAGAACCAGATTACAGAAGCTATAGTGAAATTGGCT 1582
||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 1536 TGTTTGAAGAAGCTTGTGGTTGAAGAGAATCAGATCACAGAAGCTATATTGAAATTGGCT 1595
Query 1583 TCGAGTAAGTTAATTGAAACTGTTGTGTTTCCTTCTCTTGTTTGGTAAT 1631
||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1596 TCGAGTAAGTTTATTGAAACTGTTGTGTTTGATTCTCTTGTTTGGTAAT 1644
Score = 115 bits (62), Expect = 1e-24
Identities = 78/85 (92%), Gaps = 4/85 (5%)
Strand=Plus/Plus
Query 1 CTTATCAATTCTTTTTT-CTTGCGTCTCTTGCGTGACTCAAGAATCAAACAACACAACAA 59
||||||||||||||||| | |||||||||||||||||||||||||||| | || ||||
Sbjct 1 CTTATCAATTCTTTTTTGGGTCCGTCTCTTGCGTGACTCAAGAATCAAAC-A-AC-ACAA 57
Query 60 GTGTCAAAGCCACCAAGAACACAAA 84
|||||||||||||||||||||||||
Sbjct 58 GTGTCAAAGCCACCAAGAACACAAA 82
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83985511785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5