BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493941
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40450.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1404 0.0
> AT5G40450.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 13 growth stages; Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:16184650-16195651 REVERSE LENGTH=8957
Length=8957
Score = 1404 bits (760), Expect = 0.0
Identities = 975/1078 (90%), Gaps = 17/1078 (2%)
Strand=Plus/Plus
Query 1 TCTCTAATGATCTGGGTGATTCAGAATTAGTACTCACAGTAGGTTTCTTGCAGAGAAAAC 60
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 31 TCTCTAATTATCTGGGTGATTCAGAATTTGTACTCACAGTAGGTTTCTTGCAGAGAAAAC 90
Query 61 AACTGTTCAAACCCTAAACCTCCAAATCATTTCTTCCCTGCATGAAAGATGGAAACTGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 AACTGTTCAAACCCTAAACCTCCAAATCATTTCTTCCCTGCATGAAAGATGGAAACTGGA 150
Query 121 GTTGTCACCATCCAAGAACCTGTCTCTACAAAGACTGATGTTGGGGGAGCTCCTGCAGGA 180
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 151 GTTGTCACCATCCAAGAACCAGTCTCTACAAAGACTGATGTTGGGGGAGTTCCTGCAGAA 210
Query 181 GTAATACTTGACAAATCATCCATGGAAGTACATAATATAAACCTGAGTACTGTTCTTGAT 240
||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 211 GTAATACTTGAAAAATCATCCATGGAAGTACAAAAGGTAAACCTGAGTACTGTTCTTGAT 270
Query 241 GATGAGATCACAAGTGGCG---ATCGCAGAAGCAATATTGTTACGGGAGAAGCAGATGTT 297
||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||
Sbjct 271 GATGAGATCACAAGTGGCGCCGATCGTGGAAACAATATTATTACGGGAGAAGCAGATGTT 330
Query 298 GTAAATGAT-TCAGGTAGATCAGGGAATAAAGAAACCGAAGAATTAGAACACGAAAAAGG 356
| | | | | | | | | |||||| |||||||||||||||||||| ||| |||||| ||
Sbjct 331 GCAGAGGTTGTAAA-TGGTTCAGGGGATAAAGAAACCGAAGAATTAAAACGCGAAAATGG 389
Query 357 AGAAGCGACAAAGACTATTTCGGTTGTAGATGACAGTCAGATCGTTAATGATGATCAAGG 416
|||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||||
Sbjct 390 AGAAGCGACAAAGACTATCTCGGTTCTAGATGACAGTAAGATCGTTAAAGATGATCAAGA 449
Query 417 CTCT-TTCTTCATTCATGAACCTCAAAGCTTCAAC-AAAGCAACAGAAGATGAGAACATG 474
||| || | | ||| ||||||||||||| ||||| ||| || |||||||||||| ||
Sbjct 450 ATCTATTGT-CGTTCGTGAACCTCAAAGCCTCAACGAAAAAAA-AGAAGATGAGAAGAT- 506
Query 475 AAT-TTAAGTGATGTGACTTTAGAGAAAAAGAAAGAAGACGATATTAGCGGAAAGCCAGA 533
||| ||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||
Sbjct 507 AATCTTAAGTGATGTGACTTTAGAGAATAAGAAAGAAGAGGATACTACCGGAAAGCCAGA 566
Query 534 GGAGGTAAGTGTCGAAAAGCCAGTAATTGAAGAAGATCACACAGAAACAAAACACTTACC 593
||||| |||||||||||||| ||||| ||||||||||| |||||| ||||||||| ||
Sbjct 567 AGAGGTTAGTGTCGAAAAGCCGGTAATAGAAGAAGATCAAACAGAAGCAAAACACTCACT 626
Query 594 AGAACAAGAGGAAGAGACTGCTAACATCTCTAAGGAACGTGAAGAGATACCGATAAAGAC 653
||||||||| || || | || |||||||||||||| | ||||||||||||||||||||||
Sbjct 627 AGAACAAGAAGAGGATATTGGTAACATCTCTAAGGTATGTGAAGAGATACCGATAAAGAC 686
Query 654 TGA-GAAAGTAAAAGAAGAAACAGATTCAAGTACTGTTGAGACCTCTGTAAATGGAACAG 712
||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 687 TGATGAA-GTAAGAGAAGAAACAGATTCAAGAACTGTTGAGACCTCTGTAAATGGAACAG 745
Query 713 AGGCGGAGCACAATGCAACGGTTTCAGTAGAAGAAATCTCGAGGAACGGTGACAACATTG 772
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 746 AGGCTGAGCACAATGCAACGGTTTCAGTAGAAGAAATCTCGAGGAACGGTGACAACACTG 805
Query 773 TGAATGAAACAGTTCCAGAAGATCAAAGCGCAACAGATGGGGAAACACTACATGATGTTG 832
|||||||||||||| |||||||||||| ||| |||||||| ||| |||||||||||||||
Sbjct 806 TGAATGAAACAGTTTCAGAAGATCAAACCGCGACAGATGGTGAACCACTACATGATGTTG 865
Query 833 AAACTACAAAAACAGAAGCAGAACC-TTTGTATAAGACAGTTGTAGAAGACGCTAATATC 891
|||||| ||||| |||||||||||| ||| |||||||||||||||||||| ||||| |||
Sbjct 866 AAACTATAAAAAGAGAAGCAGAACCGTTT-TATAAGACAGTTGTAGAAGATGCTAAGATC 924
Query 892 GTTACTAATGAAGAAACTGCAGCTCATGAATCTAAAATCTTGAAGGAAGATAATCATCAA 951
|| | || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GTGAATACTGAAGAAACTACAGCTCATGAATCTAAAATCTTGAAGGAAGATAATCATCAA 984
Query 952 GAGGAGGATGCAGAACCAGTAGAAGCAATCAAAACCTCAGAAG-ATGCAGAGCAAATCTC 1010
|||||| |||||||| | |||||||||| ||||| |||||| | | |||||||||| |||
Sbjct 985 GAGGAGTATGCAGAATCGGTAGAAGCAACCAAAAACTCAGACGCA-GCAGAGCAAAGCTC 1043
Query 1011 ACGTGAAGTGACTGTAGACAAACAAAAGGAAGATGACATAACCCAAAAAACAGAAGAG 1068
|||||||||||||||||||||| |||||||||| ||||||| |||||| | |||||||
Sbjct 1044 ACGTGAAGTGACTGTAGACAAAGAAAAGGAAGAGGACATAATCCAAAACATAGAAGAG 1101
Score = 235 bits (127), Expect = 6e-61
Identities = 182/208 (88%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 860 TGTATAAGACAGTTGTAGAAGACGCTAATATCGTTACTAATGAAGAAACTGCAGCTCATG 919
|||| ||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 3744 TGTA-AAGACAGTTGTCCAAGACGCTAAGATCGTTAATAATGAAGAAACTACAGCTCATG 3802
Query 920 AATCTAAAATCTTG-AAGGAAGATAATCATCAAGAGGAGGATGCAGAACCAGTAGAAGCA 978
||||| ||| |||| |||| |||||||||||| ||| | ||||||||||||||||||||
Sbjct 3803 AATCTGAAAGCTTGAAAGG-AGATAATCATCAGGAGAAAAATGCAGAACCAGTAGAAGCA 3861
Query 979 ATCA-AAACCTCAGAAGATGCAGAGCAAATCTCACGTGAAGTGACTGTAGACAAACAAAA 1037
| || ||| || ||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 3862 A-CACAAAACTTAGATGATGCAGAGCAAATCTCACGTGAAGTGACTGTAGACACAGAAAG 3920
Query 1038 GGAAGATGACATAACCCAAAAAACAGAA 1065
||||| ||||||||| |||||| ||||
Sbjct 3921 GGAAGCGGACATAACCGAAAAAATAGAA 3948
Score = 143 bits (77), Expect = 4e-33
Identities = 104/117 (89%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 953 AGGAGGATGCAGAACCAGTAGAAGCAATCAAAACCTCAGAAGATGCAGAGCAAATCTCAC 1012
||||| ||||||||||||| |||||| |||||| |||||| | | |||||||||||||||
Sbjct 1832 AGGAGAATGCAGAACCAGTGGAAGCAGTCAAAAACTCAGATGGTACAGAGCAAATCTCAC 1891
Query 1013 GTGAAGTGACTGTAGACAAA-CAAAAGGAAGATGACATAACCCAAAAAACAGAAGAG 1068
|||||||||||||||||| | |||| |||||| |||||| ||| |||||||||||||
Sbjct 1892 GTGAAGTGACTGTAGACAGAGCAAA-GGAAGAGGACATAGCCCCAAAAACAGAAGAG 1947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5