BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493945
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40420.1 | Symbols: OLEO2, OLE2 | oleosin 2 | chr5:16173393-... 1249 0.0
> AT5G40420.1 | Symbols: OLEO2, OLE2 | oleosin 2 | chr5:16173393-16174783
REVERSE LENGTH=872
Length=872
Score = 1249 bits (676), Expect = 0.0
Identities = 776/825 (94%), Gaps = 3/825 (0%)
Strand=Plus/Plus
Query 1 AAAAC-ATTTCCTCATTATCTTACAATGGCGGATACACATCGTGTCGACCGTACTGAAAG 59
||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 20 AAAACAATTT-CTCATTAGCTTACAATGGCGGATACACACCGTGTCGACCGTACTGATAG 78
Query 60 GCACTTGCAATTTCAGTCGCCGTATGAAGGCGGCCGAGTTCATCTTCAGTATGAAGGTGG 119
||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 79 ACACTTTCAATTTCAGTCGCCCTATGAAGGCGGCCGAGGTCAAGGTCAGTATGAAGGTGA 138
Query 120 CGGCGGTTACGGTGGCGGCGGTTACAAGAGCATGATGCCTGAAAGTGGCCCATCTAGCAC 179
| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 139 CCGTGGTTACGGTGGTGGCGGTTACAAGAGCATGATGCCTGAAAGTGGCCCATCTAGTAC 198
Query 180 CCAAGTATTGTCCCTTTTGATTGGCGTCCCTGTCGTTGGTTCGCTACTTGCCTTGGCCGG 239
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 199 CCAAGTATTGTCCCTGTTGATTGGAGTCCCTGTCGTCGGTTCGCTACTTGCCTTGGCTGG 258
Query 240 TTTACTTCTAGCTGGTTCGGTGATCGGCTTAATGGTCGCTTTACCGTTGTTCCTCCTCTT 299
||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||
Sbjct 259 ATTACTTCTAGCTGGTTCGGTGATCGGCTTAATGGTTGCTTTACCACTATTTCTCCTCTT 318
Query 300 TAGCCCGGTTATAGTCCCAGCGGCTCTAACCATCGGGCTTGCAATGACGGGCTTTTTAGC 359
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 319 CAGCCCGGTTATAGTCCCAGCGGCTCTAACTATCGGGCTTGCAATGACAGGCTTTTTAGC 378
Query 360 CTCGGGAATGTTTGGTCTAACCGGGCTAAGCTCAATCTCATGGGTCATGAACTATCTTCG 419
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 379 CTCGGGGATGTTCGGTCTAACCGGGCTTAGCTCAATCTCATGGGTCATGAACTATCTTCG 438
Query 420 TGGGACAAGGAGGACAGTGCCTGAGCAATTGGAGTATGCTAAGAGGAGAATGGCTGATGC 479
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TGGGACAAGGAGAACTGTGCCTGAGCAATTGGAGTATGCTAAGAGGAGAATGGCTGATGC 498
Query 480 GGTTGGCTACGCTGGGCAAAAGGGCAAAGAAATGGGCCAGCATGTGCAGAACAAGGCCCA 539
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GGTTGGCTACGCAGGACAAAAGGGCAAAGAAATGGGCCAGCATGTGCAGAACAAGGCCCA 558
Query 540 AGATGTTAAACAGTATGATATTTCTAAGTCACATGACACTACCACTAAGGGTCATGAGAC 599
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 559 AGATGTTAAACAATATGATATTTCTAAGCCACATGACACTACCACTAAGGGTCATGAGAC 618
Query 600 TCAGGGGAGGACGACGGCTGCATGATGAGTTTTCGGTATGAACGGTAGATATGTGTTTTC 659
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 619 TCAGGGGAGGACGACGGCTGCATGATGAGTTTTCAGTATGAACGGTAGATATGTGTTTTC 678
Query 660 AATATGATGTCCTTTTCTCTGCATTTTCAATATGatgttatgtgttttttttgtttggct 719
| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 ACTATTATGTCGTTTTTTCTGCATTTTCAATATGATGTTATGTGTTTTTTTTGTTTGGCT 738
Query 720 ttttgttgaaccatgttatgtgttttgtgtttttgtAAGCATGAAAGATCGCAAGTGTTG 779
|||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 739 TTTTGTTGAACCGTGT-ATGTGTTTTATGTTTTTGTAAGCATGAAAGATCGCAAGTGTTG 797
Query 780 TGGTAATATTTGAGTGTTATAATATGATAAGTTGATAAATCATGG 824
||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 798 TGGTAATATTTGAATGTAATAATATGATAAGTTGATAAATCATGG 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5