BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493946
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40410.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2730 0.0
AT5G46460.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 56.5 9e-07
> AT5G40410.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:16171374-16173226 FORWARD LENGTH=1853
Length=1853
Score = 2730 bits (1478), Expect = 0.0
Identities = 1736/1860 (93%), Gaps = 19/1860 (1%)
Strand=Plus/Plus
Query 1 AACAATGAGAGATGATCAAAGCAAATGTGTATTCATGTTCAAAGTTTAGATTTTTATATC 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AACAATGAGAGATGATCAAAGCAAATGTGTATTCATGTTCAAAGTTCAGATTTTTATATC 60
Query 61 GTCGGAGTTTTTTGAGCCGAGCTAGTACTTTTGTTCATAGTTTAGATAG-AAATGTTTCA 119
||||||| |||||||||| | |||| ||||||||||||||||||| | ||||||||||
Sbjct 61 GTCGGAGATTTTTGAGCCAATCTAG---TTTTGTTCATAGTTTAGAT-GCAAATGTTTCA 116
Query 120 TCACTTATAGCTTCTATAAATTCTTGTGTCTCCATTGAACTGTGTCGTTTGCTTCATTGT 179
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCACTTATAGCTGCTGTAAAGTCTTGTGTCTCCATTGAACTGTGTCGTTTGCTTCATTGT 176
Query 180 AAAGTAGTGAAGAGTGTGAGTTATCGCCATGGGTTTATTGGGGACCAGCTTGTTGGCTGT 239
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 177 AAAGTAGTGAAGAGTGTGAGTTACCGCCATGGATTTATTGGGGACCAGCTTGTTGGTTGT 236
Query 240 TACTTGAGATTGGGTCTTGATGTTTGCGCAGAGAAGCTGTTCGATGAAATGCCTGAGAGA 299
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 237 TACTTGAGATTGGGTCATGATGTTTGTGCAGAGAAGCTGTTCGATGAAATGCCTGAGAGA 296
Query 300 GATTTGGTGTCTTGGAACTCTTTAATATCTGGGTATTCAGGGAGAGGACATTTGGGGAAA 359
||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 297 GATTTAGTCTCTTGGAACTCTTTAATATCTGGGTATTCAGGGAGAGGTTATTTGGGGAAA 356
Query 360 TGTTTTGAGGTGTTATGTAAGATGATGAGATCTGAGGTGGGTTTTAGACCTAATGAAGTT 419
|||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||
Sbjct 357 TGTTTTGAGGTGTTGTCTAGGATGATGATATCTGAGGTGGGTTTTAGACCTAATGAAGTT 416
Query 420 ACGTTTTTGTCGATGATTTCGGCTTGTGTTCATGGAGGAAATAAGGAAGAGGGA-GTTTG 478
||||||||||||||||| |||||||||||| | || |||| ||||||||| ||| | |||
Sbjct 417 ACGTTTTTGTCGATGATCTCGGCTTGTGTTTACGGGGGAAGTAAGGAAGAAGGACG-TTG 475
Query 479 CATTCATGGGTTGGTGATGAAATCTGGTGTGCTTGAGGAAGTTAAAGTTGTGAATGCTCT 538
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 476 TATTCATGGGTTGGTGATGAAATTTGGTGTACTTGAGGAAGTTAAAGTTGTGAATGCTTT 535
Query 539 TATGAATTTGTATGGAAAGACTGGAGATTTGATTTCGTCCTGCAAATTGTTTGAGGATTT 598
||| |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 536 TATCAATTGGTATGGAAAGACTGGAGATTTGACTTCATCCTGCAAATTGTTTGAGGATTT 595
Query 599 GAGTGTAAAGAATTTGGTTTCGTGGAATACGATGATTGTGATTCACTTGCAAAACGGTTT 658
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 596 GAGTATAAAGAATTTGGTTTCTTGGAATACGATGATTGTGATTCACTTGCAGAACGGTTT 655
Query 659 GGCCGAAGAAGGTCTGGCTTACTTCAACATGAGCAGATGGGTTGGGCTTAAGCCTGATCA 718
|| ||| |||||||||||||||| |||||||||||| ||||||||| ||||||||||
Sbjct 656 AGCTGAAAAAGGTCTGGCTTACTTTAACATGAGCAGAAGGGTTGGGCACGAGCCTGATCA 715
Query 719 AGCCACTTTTCTGGCTGTTCTCCGT-GTCTGTGAAGACATCGGG-GTAGTGAGATTGTCA 776
||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||| |
Sbjct 716 AGCCACTTTTCTGGCTGTTCTCCGTAG-CTGTGAAGACAT-GGGTGTAGTGAGATTGGCG 773
Query 777 CAAGGAATTCATGGGCTAATCATGTTTTGTGGGTTCAATGCAAACACA-TGTATAACGAC 835
||||||||||||||||||||||||||| ||||||||| || ||||| | |||||||||||
Sbjct 774 CAAGGAATTCATGGGCTAATCATGTTTGGTGGGTTCAGTGGAAACA-AGTGTATAACGAC 832
Query 836 TGCGTTATTAGACTTGTATGCAAAACTTGGGAGGTTGGAGGATTCGTCTACGGTATTTCT 895
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 833 AGCGTTATTAGACTTGTATTCGAAACTTGGGAGGTTGGAGGATTCGTCTACGGTTTTTCA 892
Query 896 TGAGATTACTTCTCCTGATAGCATGGCGTGGACAGCAATGCTTGCTGCTTATGCCACTCA 955
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 893 TGAGATTACTTCTCCAGATAGTATGGCGTGGACTGCAATGCTTGCTGCTTATGCCACTCA 952
Query 956 CGGGTATGGAAGAGATGCAATAAAGCATTTTGAGCTCATGGTTCACTATGGT-TTAAGTC 1014
|||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 953 TGGGTTTGGAAGAGATGCAATCAAGCATTTTGAGCTCATGGTTCACTATGGTATT-AGTC 1011
Query 1015 CTGATCATGTAACCTTCACTCACTTGTTAAATGCTTGTAGTCACTCAGGTCTGGTCGAAG 1074
||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 1012 CTGATCATGTAACCTTCACTCACTTGTTAAATGCTTGTAGTCATTCTGGTCTTGTAGAAG 1071
Query 1075 AAGGGAGGTATTATTTCGAAACAATGTCGAAAAGATACAGAATTGAGCCC-AGGTTAGAT 1133
|||||| | ||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1072 AAGGGAAGCATTATTTCGAAACAATGTCGAAAAGATACAGGATTGA-CCCGAGGTTAGAT 1130
Query 1134 CACTACTCATGTATGGTTGATCTCA-TGGGTCGATCCGGGCTTCTCCAAGATGCTTATGG 1192
||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1131 CACTATTCATGTATGGTTGATCT-ACTGGGTCGATCCGGGCTTCTCCAAGATGCTTATGG 1189
Query 1193 ATTGATCAAAGAGATGCCAATGGAGCCGAGTTCTGGTGTTTGGGGAGCTTTGCTTGGTGC 1252
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1190 ATTGATCAAAGAAATGCCAATGGAGCCTAGTTCTGGTGTTTGGGGAGCTTTGCTTGGTGC 1249
Query 1253 TTGTAGGGTTTACAAAGATACCCAACTCGGAACAAAAGCGGCAAAGAGATTGTTTGAACT 1312
||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||| |
Sbjct 1250 TTGTAGGGTTTACAAAGATACACAACTCGGAACAAAAGCCGCAGAGAGATTGTTCGAATT 1309
Query 1313 AGAGCCTCGTGATGGTAGAAACTACATAATGCTATCAAACATCTATTCAGCTTCTGGTCT 1372
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1310 AGAGCCTCGTGATGGTAGAAACTATGTAATGCTCTCAAACATCTATTCAGCTTCTGGTCT 1369
Query 1373 ATGGAAAGATGCTTCAAGAATAAGGAATCTGATGAAACAGAAAGGTCTTGTAAGAGCTTC 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 ATGGAAAGATGCTTCAAGAATAAGGAATCTGATGAAACAGAAAGGTCTTGTAAGAGCTTC 1429
Query 1433 AGGGTATAGTTACATTGAACATGGTAATAAGATTCATAAGTTTGTTGTTGGAGATTGGTC 1492
||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1430 AGGGTGTAGCTACATTGAACATGGTAACAAAATTCATAAGTTTGTTGTTGGAGATTGGTC 1489
Query 1493 TCATCCTGAATCagagaagatacagaagaagctaaaagagattagaaagaagatgaagaG 1552
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 1490 TCATCCTGAATCAGAGAAGATACAAAAGAAGCTGAAAGAGATTAGGAAGAAGATGAAGAG 1549
Query 1553 TGAGTTGGGATTTAAATCAAGAACAGAGTTTGTATTACATGATGTTGATGAAGATGTGAA 1612
||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||
Sbjct 1550 TGAAATGGGATATAAATCAAAAACAGAGTTTGTATTACATGATGTTGGTGAAGATGTTAA 1609
Query 1613 AGAAGAAATGATTAATCAACATAGTGAGAAGATTGCAATGGCGTTTGGGCTTTTGGTGAT 1672
||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1610 AGAGGAAATGATCAATCAACATAGTGAGAAGATTGCGATGGCGTTTGGGCTTTTGGTGGT 1669
Query 1673 TAGTCCAATGGAGCCAATTATCATAAGGAAGAATCTTAGAATTTGTGGAGATTGTCATGA 1732
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1670 TAGTCCAATGGAGCCAATTATCATAAGGAAGAATCTTAGAATTTGTGGGGATTGTCATGA 1729
Query 1733 AACAGCAAAAGCAATTTCATTGATTGAAAAAAGAAGAATCATTATTAGAGATTCTAAGAG 1792
||||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1730 AACAGCAAAAGCAATATCTTTGATCGAGAAAAGGAGAATCATTATTAGAGATTCTAAGAG 1789
Query 1793 GTTTCATCATTTCTTAGAAGGATCATGCTCTTGCAGAGATTATTGGTAGTATCTCAATTT 1852
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 1790 GTTTCATCATTTCTTAGACGGATCATGCTCTTGTAGCGATTATTGGTAGTATCTCAATTT 1849
> AT5G46460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:18840305-18842398 FORWARD LENGTH=2094
Length=2094
Score = 56.5 bits (30), Expect = 9e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 267 GCAGAGAAGCTGTTCGATGAAATGCCTGAGAGA 299
|||| ||||||||||||||||||||||||||||
Sbjct 346 GCAGTGAAGCTGTTCGATGAAATGCCTGAGAGA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91666195170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5