BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493948
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40400.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3123 0.0
AT4G13885.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 198 2e-49
> AT5G40400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:16166438-16168841 FORWARD LENGTH=2404
Length=2404
Score = 3123 bits (1691), Expect = 0.0
Identities = 2167/2390 (91%), Gaps = 59/2390 (2%)
Strand=Plus/Plus
Query 1 ATTTATGAAGAGGCTCGTTTCAAAGCTTCGATTTTTCT-C-C----TCTTCTTCGATAGT 54
||||||||||| ||||||||||| ||||||||||||| | | ||||||||||||||
Sbjct 3 ATTTATGAAGAATCTCGTTTCAAACCTTCGATTTTTCTCCTCTTATTCTTCTTCGATAGT 62
Query 55 TCCACGATGCAACAATATACCTAAACCAATCCTCAATCCTCTTTATAATCTACTTCCCCA 114
||| ||||| | || |||||||||||||| ||||||||||| || ||| ||||||||||
Sbjct 63 TCCGCGATGTAGTAACATACCTAAACCAATTCTCAATCCTCTCTACAATTTACTTCCCCA 122
Query 115 GACTCAAAACCCTAATAAAATCGTAGATGTTATCTGTTCAACACTCAACCACCGTGATCA 174
| |||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |
Sbjct 123 GTCTCAAAACCCTAGTAAAATCGTGGATGTTATCTGTTCAACACTCAACCACAGTGATTA 182
Query 175 TTCCGTCTTGTTACCTAACCTTCGTGACGAGGTTAAATCGCTGATTCCTCATTTGGGTTA 234
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 183 TTCCGTCTTGTTACCTAACCTTCGTGACGAGGTGAAATCGCTGATTCCTCATTTGGGTTA 242
Query 235 TCCTGAAATCTCTAGGGTTTTGCTTAGGTTTCAATCTGATGCTTCTCGAGCTCTTACGTT 294
|||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 243 TCCTGAAATCTCGAGGGTTTTGCTTAGGTTTCAGTCTGATGCTTCTCGAGCTATTACGTT 302
Query 295 CTTTAAATGGGTTAAATTTGATTTGGGGAAGAGACCTAATGTTGGTAACTACTGTTTGTT 354
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 CTTTAAATGGGTTAAATTTGATTTGGGGAAGAGGCCTAATGTTGGTAACTACTGTTTGTT 362
Query 355 GCTTCACATTCTTGCT-TCGTCTAAGAAGTTTCCTTTAGCTATGCAATTTCTCTGTGAGT 413
|||||||||||||| | || |||||||||||||||||||||||||| ||||||||||| |
Sbjct 363 GCTTCACATTCTTG-TGTCTTCTAAGAAGTTTCCTTTAGCTATGCAGTTTCTCTGTGAAT 421
Query 414 TGATTGAATTGACATCTAAGAAAGAAGAAGAGGATGTGTTCAGTGTTTTGGTTTCTGCTT 473
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 422 TGATTGAATTGACATCTAAGAAAGAAGAAGTGGATGTGTTCAGAGTTTTGGTTTCTGCTA 481
Query 474 CTGATGAATGTAATTGGGATCCTGTTATTTTCGATATGCTTGTCAAGGGTTATCTGAAGT 533
|||||||||||||||||||||||||| |||| ||||||||||| || ||||||||||| |
Sbjct 482 CTGATGAATGTAATTGGGATCCTGTTGTTTTTGATATGCTTGTGAAAGGTTATCTGAAAT 541
Query 534 TGGGTTTGGTAGAAGACGGGTTTTCGACATTTAGGA-AGGTGATTGATTCGGGTTTTCGT 592
|||||||||||||||| |||||| | |||| || ||||| ||||||| |||||| ||
Sbjct 542 TGGGTTTGGTAGAAGAAGGGTTTAGGGTTTTTA-GAGAGGTGCTTGATTCCGGTTTTAGT 600
Query 593 GTTAGTGTTGTTACTTGTAATCATCTATTGAATGGGTTGCTGAAATTGGATTTGATGGAG 652
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 601 GTTAGTGTTGTTACTTGTAATCATCTACTGAATGGGTTGTTGAAGTTGGATTTGATGGAG 660
Query 653 GATTGTTGGCAAGTGTATAATGTGATGTGTAGAGTTGGCATCCATCCCAATACGTATACG 712
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 661 GATTGTTGGCAAGTGTATAGTGTGATGTGTAGAGTTGGAATCCATCCCAATACGTATACG 720
Query 713 TTCAACATTCTTACGAATGTGTTCTGCAACAATTCGAATTTTCGTGAAGTGGATGACTTT 772
|||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 721 TTCAACATTCTTACTAATGTGTTCTGCAACGATTCAAATTTTCGTGAAGTTGATGACTTT 780
Query 773 TTGGAGAAGATGGAGGAAGAAGGTTTTGAGCCTGATTTGGTTACTTATAATACGTTAGTG 832
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTGGAGAAGATGGAAGAAGAAGGTTTTGAGCCTGATTTGGTTACTTATAATACGTTAGTG 840
Query 833 AGTAGTTATTGTAGAAGAGGAAGGTTGAAAGAAGCGTTTTATCTGTACAAGATTATGTAT 892
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 841 AGTAGTTATTGTAGAAGAGGAAGGTTGAAAGAAGCGTTTTATCTGTATAAGATCATGTAT 900
Query 893 AGGCGTCGTGTTGTGCCTGATTTAGTTACTTATACATCGCTTATCAAAGGTCTTTGTAAA 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGCGTCGTGTTGTGCCTGATTTAGTTACTTATACATCGCTTATCAAAGGTCTTTGTAAA 960
Query 953 GACGGGAGAGTTAGAGAAGCTCATCAGACGTTTCATAGGATGGTAGACAGAGGAATTAAG 1012
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 961 GACGGGAGAGTTAGAGAAGCTCATCAGACTTTTCACAGGATGGTAGACAGAGGAATTAAG 1020
Query 1013 CCTGATTGTATGTCTTACAATACTCTTATCTATGCTTATTGCAAAGAAGGAATGATGCAA 1072
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1021 CCTGATTGCATGTCTTACAATACTCTTATTTATGCTTATTGCAAAGAAGGAATGATGCAA 1080
Query 1073 CAATCGAAGAAGCTGTTACATGAAATGCTTGGGAATAGCGTTGTTCCGGATAGGTTTACT 1132
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1081 CAATCGAAGAAGCTGTTACATGAAATGCTTGGGAATAGCGTTGTTCCCGACAGGTTTACT 1140
Query 1133 TGTACGGTTATAGTTGAAGGATTTGTGAGAGAAGGACGGTTACTTGCTGCTGTTAATTTT 1192
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 TGTAAGGTTATAGTTGAAGGATTTGTGAGAGAAGGACGGTTACTTTCTGCTGTTAATTTT 1200
Query 1193 GTTGTCGAACTTAGAAGGTTAAAGGTT-ATCATCCCAATTGAAGTTTGCGACTTTCTGAT 1251
|||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1201 GTTGTCGAGCTTAGAAGGTTAAAGGTTGAT-ATCCCATTTGAAGTTTGCGACTTTCTGAT 1259
Query 1252 AAAAAGTTTATGCCAGGAAGGTAAACCATTTGCAGCAAAGCATTTGTTAGAAAGAATCAG 1311
| |||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
Sbjct 1260 AGTAAGTTTATGCCAGGAAGGTAAACCATTTGCAGCAAAGCATCTATTAGATCGAATTA- 1318
Query 1312 T-AAAGAGGAAGGTCACGAGGCTAAACCAGAGACTTACAATAACTTAATCGAGTCTTTGT 1370
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1319 TCGAAGAGGAAGGTCACGAGGCTAAACCAGAGACTTACAATAACTTAATTGAGTCTTTGT 1378
Query 1371 GCCGTTGTGATGCTATTGAAGAGGCATTGGTTCTAAAAGGGAAACTCAAAAACCAGAATC 1430
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 CCCGTTGTGATGCTATAGAGGAGGCATTGGTTCTAAAAGGCAAACTCAAAAACCAGAATC 1438
Query 1431 AAGTACTTGATGTCAAGACATACCGAGCTCTTATTGGCTGCTTATGTAGGATTGGTAGGA 1490
|||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1439 AAGTACTTGATGCCAAGACATACCGAGCTCTTATAGGCTGCTTGTGTAGGATTGGTAGGA 1498
Query 1491 ACCGTGAAGCCGAGTCTTTGATGGCGGAAATGCTTGATTCAGAAGTGAAACCGGATTCAT 1550
||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 1499 ACCGTGAAGCCGAGTCTTTGATGGCAGAAATGTTTGATTCTGAAGTGAAACCGGATTCAT 1558
Query 1551 TTATATGCGGGGCTTTGGTTAATAGATACTGCAAGGAATTGGATTTCGATAAAGCCGAGA 1610
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 1559 TTATATGCGGGGCTTTGGTTTATGGATACTGCAAGGAATTGGATTTCGATAAAGCTGAGA 1618
Query 1611 GTCTACTAAGTTTCTTTGCTATGGAGTTTAGAATCTTTGACACAGTGAGTTACAATTCGC 1670
| ||| | ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1619 GACTATTGAGTTTGTTTGCTATGGAGTTTAGAATCTTTGACCCAGAGAGTTACAATTCGC 1678
Query 1671 TGGTTAATGCAT-TATGTGAAACGGGAAT-CGGATATGATAAAGTGTTAGATCTTCAGGA 1728
| ||||| || | | ||||||||||| || |||||| | |||| |||||| ||||| ||
Sbjct 1679 TTGTTAAGGC-TGTTTGTGAAACGGG-ATGTGGATATAAGAAAGCGTTAGAGCTTCAAGA 1736
Query 1729 AAGAATGCAGAGACTTGGGTTTGTTCCAAACAGCTTAACCTGTAAGTACTTGATCCAAGT 1788
||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1737 AAGAATGCAAAGACTCGGGTTTGTTCCAAACAGGTTAACTTGTAAGTACTTGATCCAAGT 1796
Query 1789 GTTGGAACAGCCTTCTTTGCCAAATCATCCGCCTGAGAATTGAAGCAAAGCTTGATGCGA 1848
||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 1797 GTTGGAACAGCCTTCTTTGCCCAATCATCTGCCTGAGAATTGAAGCAACGCTTGATGCGA 1856
Query 1849 TGAAACTTGTATTCCTGGTTCTTGGCCAGAT--G---C---------AT---AACTTA-A 1890
||||| |||||||||| |||||||||||| | | || |||||| |
Sbjct 1857 TGAAATTTGTATTCCTTAATCTTGGCCAGATGCGTAACTTAAAGAAAATACAAACTTAGA 1916
Query 1891 --A-GA--A---AGGATCGTTTTAACTGGTGGTTTAGCCTGTAGAATCTCTCGA-AAAAG 1941
| || | |||||||||||| ||||||| || |||||| ||||| | | ||| |
Sbjct 1917 GGATGAGTACTGCGGATCGTTTTAAGTGGTGGTGAAGTCTGTAGGATCTCGC-ACAAAGG 1975
Query 1942 GTCTAGTACTTGCTTAGCATCCAT-GAGGAAAATGATGTCCTTGTGATTCAGTGCCCAGA 2000
||| |||||||||||||||||| | |||||||||| ||||||| | |||||||||| |||
Sbjct 1976 GTCCAGTACTTGCTTAGCATCC-TGGAGGAAAATGTTGTCCTTATAATTCAGTGCCAAGA 2034
Query 2001 GCATTTACCTCAGCTTCCGCTGCATTCTCTGCTGTCGGAAGCCTACCTCAACTCCAAAGC 2060
|||||| ||||||||| ||||| || | |||||| | |||| |||||| |||||||| |
Sbjct 2035 GCATTTGCCTCAGCTTTTGCTGCTTTGTTTGCTGTTGAAAGCTTACCTCGACTCCAAAAC 2094
Query 2061 ACAAGTCTTCTCTGTTGATCAAACAAGAGCCAAGCTATGCCGATTTGTGTGTTCGCATTG 2120
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 2095 ACAAGTCTTCTCTGTTGATCAAACAAGAGCCAAGCAATGCCGATCGGTGTGTTCTTATTG 2154
Query 2121 ATACAGGATGCATCCAGATAACAG-TAATATTGACT-AGTTGGAACTAAAGGATGCACCT 2178
|||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||
Sbjct 2155 ATACAGGATGCATCCAGATAACAGGTT-TATTGAGTTAGTTGGAACTAAAGGATGCACCT 2213
Query 2179 GAAATGGTTGCAGATTGCCTCCAATTTTGTAGTCTGTAGCAATTCCAAGAGTTTGAGCAG 2238
|||| |||||||||||||| | ||||||||| ||||||| |||| ||||||||||| |
Sbjct 2214 GAAACGGTTGCAGATTGCCAC-AATTTTGTATTCTGTAGTAATTGTAAGAGTTTGAGAAT 2272
Query 2239 GATTGTCTTTTTTAATCCTTGCCTCATGTCTTCTGGTTT-GCTTATTTCCATGGATTTGA 2297
|||||||| || | ||||| || |||||| |||||| | || ||||||||||| |||
Sbjct 2273 GATTGTCTATTGGACCCCTTGTCTTGTGTCTTGTGGTTTCG-TTCTTTCCATGGATGTGA 2331
Query 2298 AAGT-AAAGTATCAAACTTTGTGTAGTTGAAGCAATTTCTTTGTAACTCT 2346
| || |||||| || ||||||||||||| |||| |||||||||||||||
Sbjct 2332 A-GTTAAAGTA--AA-CTTTGTGTAGTTGCAGCAGTTTCTTTGTAACTCT 2377
> AT4G13885.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr4:8028911-8030754 REVERSE
LENGTH=792
Length=792
Score = 198 bits (107), Expect = 2e-49
Identities = 142/158 (90%), Gaps = 6/158 (4%)
Strand=Plus/Plus
Query 333 ATGTTGGTAACTACTGTTTGTTGCTTCACATTCTTGCTTCGTCTAAGAAGTTTCCTTTAG 392
||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 311 ATGTTGGTAACTACTGTTTGTTGCTTCACATTCTTCCTTCGTCCAAGAAGTTTACTTTAG 370
Query 393 CTATGCAATTTCTCTGTGAGTTGATTGAATT-GACATCTAAGAAAGAAGAAGAGGATGTG 451
||||||||||||| |||||||||||||| || |||||||||| |||||||||| ||||
Sbjct 371 CTATGCAATTTCTGTGTGAGTTGATTGA-TTCGACATCTAAGGAAGAAGAAGA---TGTG 426
Query 452 TTCAGTGTTTTGGTTTCTGCTTCTGATGAATGTAATTG 489
||||| |||||||||| |||| |||||||| || |||
Sbjct 427 TTCAGAGTTTTGGTTTATGCTAGTGATGAAT-TACTTG 463
Score = 67.6 bits (36), Expect = 5e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1434 TACTTGATGTCAAGACATACCGAGCTCTTATTGGCTGCT 1472
||||||||||||||||||||||||||||||| |||||||
Sbjct 458 TACTTGATGTCAAGACATACCGAGCTCTTATAGGCTGCT 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116465264400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5