BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493949
Length=2747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40390.1 | Symbols: SIP1 | Raffinose synthase family protein... 4303 0.0
> AT5G40390.1 | Symbols: SIP1 | Raffinose synthase family protein
| chr5:16161515-16165357 FORWARD LENGTH=2829
Length=2829
Score = 4303 bits (2330), Expect = 0.0
Identities = 2605/2735 (95%), Gaps = 30/2735 (1%)
Strand=Plus/Plus
Query 1 TTACATGTCGACCAATAAATCTATAAGTATATAATGACATTTCCAAACTTTCTTTCAATC 60
|||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||
Sbjct 19 TTACATGTCGACCAATAATTCTATAAGTATCTAATGACATTTCCTATCTTTCTTTCAATC 78
Query 61 CATAATCTTATCAAATAATCAAATTTGGGAAAGTTTTTAAGATTCATAATCTCTATAAAT 120
||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 79 CATAATCTTATCATATAATCAAATTCGGGAAAGTTTTTAAGTTTCATAAACTCTATAAAT 138
Query 121 TACTCTCTACCATCTTAACCT-AAAAA-A----C-AT-C--T-T-C--AATCTT--TTAT 164
||||||||||||||||||||| ||||| | | || | | | | |||||| |||
Sbjct 139 TACTCTCTACCATCTTAACCTAAAAAACATTCTCAATCCTTTGTCCAAAATCTTGCATAT 198
Query 165 CGGCAAAATGGCTCCACCGAGTTTAACCAAGTCCGATTCCGGTACCAACGGCGTTTACTT 224
||||||||||||| | ||| |||| ||||||||||||||||||| ||| |||||| ||||
Sbjct 199 CGGCAAAATGGCTTCGCCGTGTTTGACCAAGTCCGATTCCGGTATCAATGGCGTTGACTT 258
Query 225 TACCGGAAAACCTCTTTTCCGGTTAGAAGATTCCAATCTCTTAGCAAATGGTCAAGTCGT 284
|||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 259 TACC-GAAAA-----ATTCCGGTTAGAAGATTCCACTCTCTTAGCCAATGGTCAAGTCGT 312
Query 285 CTTAACCGATGTTCCGGTTAACGTTACTCTCACCACTTCACCTTACCTAACCGACAAAGA 344
|||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 313 CTTAACCGATGTTCCGGTTAACGTTACTCTCACCTCTTCACCTTACTTAGTCGACAAAGA 372
Query 345 CGGCCTACCAATCGACGTCTCCGCCGGTTCATTCATCGGGTTTAACCTCGACGGAGAGCC 404
||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 373 CGGTGTACCACTCGACGTCTCTGCCGGTTCATTCATCGGGTTTAACCTCGACGGAGAGCC 432
Query 405 CAAAAGCCACCACGTGGCATCCATCGGAAAACTCAAGAACATTCGTTTCATGAGCATATT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CAAAAGCCACCACGTGGCATCCATCGGAAAACTCAAGAACATTCGTTTCATGAGCATATT 492
Query 465 CCGTTTCAAGGTTTGGTGGACCACTCATTGGGTCGGATCAAACGGACGTGACATCGAGAA 524
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 493 CCGTTTCAAGGTTTGGTGGACTACTCATTGGGTCGGATCAAACGGACGTGACATCGAGAA 552
Query 525 CGAGACCCAAATCATCATTCTTGATCAATCCGCGTCGGATTCTGGATCCGGATCCGGGTC 584
|||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 553 CGAGACTCAAATCATCATTCTTGATCAATCCGGGTCGGATTCTGGACCCGGATCCGGGTC 612
Query 585 GGGTCGTCCTTATGTTCTCCTGTTACCTCTTCTTGAAGGCTCCTTCCGTTCATCTTTCCA 644
||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 613 GGGTCGTCCTTATGTTCTCTTGCTACCTCTTCTTGAAGGCTCCTTCCGTTCATCATTCCA 672
Query 645 ATCTGGAGAAGACGATGATGTGGCGGTCTGTGTCGAATCCGGGTCAACCCAAGTAACCGG 704
||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 673 ATCCGGAGAAGACGATGACGTGGCGGTCTGTGTCGAATCCGGGTCGACCGAAGTAACCGG 732
Query 705 GTCGGAGTTTCGTCAGATTGTGTATGTCCACGCCGGAGATGACCCGTTTAAGCTCGTGAA 764
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 733 GTCGGAGTTTCGTCAGATTGTGTATGTCCATGCCGGGGATGACCCGTTCAAGCTCGTGAA 792
Query 765 GGACGCCATGAAAGTGATTAGGGTTCATATGAATACGTTCAAGCTTCTTGAAGAGAAATC 824
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AGACGCCATGAAAGTGATTAGGGTTCATATGAATACGTTCAAGCTTCTTGAAGAGAAATC 852
Query 825 GCCGCCGGGAATCGTCGATAAGTTCGGGTGGTGCACTTGGGACGCTTTTTACTTGACGGT 884
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 853 GCCGCCGGGAATTGTCGATAAATTCGGGTGGTGCACTTGGGATGCTTTTTACTTGACGGT 912
Query 885 GAATCCTGACGGAGTTCATAAAGGTGTTAAGTGTCTCGTCGACGGTGGTTGTCCTCCGGG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GAATCCTGACGGAGTTCATAAAGGTGTTAAGTGTCTCGTCGACGGTGGTTGTCCTCCGGG 972
Query 945 ATTGGTTCTTATCGACGACGGTTGGCAATCGATTGGACATGATTCCGATGGTATTGATGT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 ATTGGTTCTTATCGACGACGGTTGGCAATCGATTGGACATGATTCCGATGGTATTGATGT 1032
Query 1005 CGAAGGGATGAATATTACCGTCGCCGGTGAACAAATGCCTTGCAGGCTTCTGAAGTTTGA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CGAAGGGATGAATATTACCGTCGCCGGTGAACAAATGCCTTGCAGGCTTCTGAAGTTTGA 1092
Query 1065 AGAGAACCACAAATTCAAAGACTACGTGTCTCCAAAAGATCAAAACGACGTCGGAATGAA 1124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1093 AGAGAACCACAAATTCAAAGACTACGTTTCTCCAAAAGATCAAAACGACGTCGGAATGAA 1152
Query 1125 AGCTTTCGTCAGAGATCTGAAAGATGAATTCTCCACCGTTGATTACATCTACGTCTGGCA 1184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1153 AGCTTTCGTCAGAGATCTGAAAGATGAATTCTCCACCGTTGATTACATCTACGTTTGGCA 1212
Query 1185 CGCACTTTGCGGTTACTGGGGAGGTCTCCGTCCCGAAGCTCCGACTCTTCCGCCGTCGAC 1244
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 1213 CGCACTTTGCGGTTACTGGGGAGGTCTCCGTCCTGAAGCTCCGGCTCTGCCGCCGTCGAC 1272
Query 1245 TATTATCCGGCCAGAGCTCTCTCCAGGACTTAAACTCACAATGGAAGATCTCGCCGTCGA 1304
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1273 CATTATCCGGCCCGAGCTCTCTCCAGGACTTAAACTAACAATGGAAGATCTCGCCGTCGA 1332
Query 1305 TAAGATCATTGAGACCGGAATCGGACTTGTCTCGCCGGACTTGGCGAAAGAGGTCTACGA 1364
||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 1333 TAAGATCATAGAGACCGGAATCGGATTTGCCTCGCCGGACTTGGCGAAAGAGTTCTACGA 1392
Query 1365 AGGTCTTCACTCTCATCTTCAAAACGCCGGTATTGACGGCGTTAAAGTTGATGTCATCCA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AGGTCTTCACTCTCATCTTCAAAACGCCGGTATTGACGGCGTTAAAGTTGATGTCATCCA 1452
Query 1425 CATATTGGAGATGTTGTGCGAGAAATATGGCGGGAGAGTTGACTTGGCCAAAGCTTACTT 1484
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CATATTGGAGATGTTATGCCAGAAATATGGCGGGAGAGTTGACTTGGCCAAAGCTTACTT 1512
Query 1485 CAAGGCGCTAACGTCGTCAGTGAATAAGCATTTTAATGGTAACGGCGTTATCGCCAGCAT 1544
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1513 CAAGGCGTTAACGTCGTCAGTGAATAAGCATTTTAACGGTAACGGCGTTATCGCCAGCAT 1572
Query 1545 GGAGCACTGTAATGACTTCATGTTCCTTGGAACTGAAGCCATCGCTCTTGGTCGTGTCGG 1604
|||||| || |||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1573 GGAGCATTGCAATGACTTTATGTTCCTTGGAACTGAAGCCATCTCTCTTGGTCGTGTCGG 1632
Query 1605 TGATGACTTTTGGTGCACGGATCCATCAGGCGATCCAAACGGTACGTTTTGGCTACAAGG 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 TGATGACTTTTGGTGCACGGATCCATCAGGCGATCCAAACGGTACGTTTTGGCTACAAGG 1692
Query 1665 ATGTCACATGGTCCACTGTGCATACAACAGTCTCTGGATGGGAAATTTCATTCAGCCTGA 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 ATGTCACATGGTCCACTGTGCATACAACAGTCTCTGGATGGGAAATTTCATTCAGCCTGA 1752
Query 1725 TTGGGACATGTTTCAGTCCACTCATCCTTGTGCTGAGTTCCATGCTGCTTCTCGAGCCAT 1784
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1753 TTGGGACATGTTTCAGTCCACACATCCTTGTGCTGAGTTCCATGCTGCTTCTCGGGCCAT 1812
Query 1785 ATCGGGTGGGCCGATTTACATCAGTGATTGTGTGGGCAAGCATGATTTCGATCTCTTGAA 1844
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1813 TTCCGGTGGGCCGATTTACATCAGTGATTGTGTGGGCAAGCATGATTTTGATCTCTTGAA 1872
Query 1845 GCGTCTAGTTTTGCCCAACGGTTCGATTTTGAGGTGTGAGTACTATGCTCTCCCAACTCG 1904
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 GCGTCTTGTTTTGCCCAACGGTTCGATTTTGAGGTGTGAGTACTATGCTCTCCCAACTCG 1932
Query 1905 TGACCGCCTATTTGATGATCCTCTTCATGATGGCAAAACCATGCTCAAGATTTGGAACTT 1964
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 TGACCGTCTCTTTGAGGATCCTCTTCATGATGGCAAAACCATGCTCAAGATTTGGAACTT 1992
Query 1965 GAACAAGTACACTGGAGTTATTGGAGCATTCAACTGTCAAGGAGGAGGATGGTGCAGAGA 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 GAACAAGTACACTGGAGTTATTGGAGCATTCAACTGTCAAGGAGGAGGATGGTGCAGAGA 2052
Query 2025 AACCAGACGCAACCAATGTTTCTCTGAATGCGTTAACACGCTAACTGCCACAACAAGCCC 2084
||||||||| ||||||||||||||||||||||| |||||| |||| ||||| ||||||||
Sbjct 2053 AACCAGACGTAACCAATGTTTCTCTGAATGCGTCAACACGTTAACCGCCACCACAAGCCC 2112
Query 2085 TAAAGACGTTGAATGGAACAGTGGAAGCAGCCCAATCTCCATTGCAAACGTTGAAGAGTT 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2113 TAAAGACGTTGAATGGAACAGTGGAAGCAGCCCAATCTCCATTGCAAACGTTGAAGAGTT 2172
Query 2145 TGCTTTGTTCTTGTCTCAATCCAAGAAGCTTGTGTTGTCTGGACTAAATGATGATCTCGA 2204
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 2173 TGCTTTGTTCTTGTCTCAATCCAAGAAGCTTTTGTTGTCTGGACTAAACGATGATCTTGA 2232
Query 2205 GCTCACTTTAGAGCCTTTCAAGTTTGAGCTGATCACTGTCTCTCCTGTTGTGACCATTGA 2264
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2233 GCTGACTTTGGAGCCTTTCAAGTTTGAGCTGATCACTGTCTCTCCTGTTGTGACCATTGA 2292
Query 2265 GGGTAATTCAGTCCGGTTTGCTCCGATTGGACTGGTTAACATGCTAAACACAAGCGGTGC 2324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2293 GGGTAATTCAGTCCGGTTTGCTCCGATTGGACTGGTTAACATGCTAAACACAAGCGGTGC 2352
Query 2325 GATCCGGTCTCTGGTGTATAATGATGAAACTGTTCAGATCGGAGTTTTTGGTGCGGGAGA 2384
|||||||||| ||||||||||||||||| ||||| || |||||||||||||||| |||||
Sbjct 2353 GATCCGGTCTTTGGTGTATAATGATGAATCTGTTGAGGTCGGAGTTTTTGGTGCCGGAGA 2412
Query 2385 GTTTAGGGTTTATGCATCGAAAAAACCTGAGAGCTGCTTAATTGATGGTGAAGTTGTTGA 2444
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2413 GTTTAGGGTTTATGCATCGAAAAAACCTGTGAGCTGCTTAATTGATGGTGAAGTTGTTGA 2472
Query 2445 GTTTGGTTATGAAGACTCAATGGTGATGGTGCAAGTGCCTTGGTCTGGTCCAGAGGGTTT 2504
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2473 GTTTGGTTATGAAGACTCAATGGTGATGGTGCAAGTCCCTTGGTCTGGTCCAGATGGTTT 2532
Query 2505 GACTTCTATTGAGTATTTGTTTTAGAGAATTTGAAGGTCCTTATTTGTTTCCTTCTAAAC 2564
| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2533 GTCTTCTATTCAGTATTTGTTTTAGAGATTTTGAAGGTCCTTATTTGTTTCCTTCTTAAC 2592
Query 2565 TCCGTACCGTTCGTTGAGTTTTCCAAAGAACTCCGAGCCGttttttttATATGGTTT-TC 2623
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 2593 TCCGTACCGTTCGTTGAGTTTTTGAAAGAACTCCGAGCCGTTTTTT--ATATGGTTTCT- 2649
Query 2624 GAGAGTGAACAATTTATGTTGGGtttttttttgtcaaacaatttatgttggcttttttat 2683
|||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2650 GAGAGTAAACAATTTATGTTGG-TTTTTTTTTGTCAAACA-TTTATGTTGGCTTTTTTAT 2707
Query 2684 ttgaggatttt-tttt-ATCAGTGGTAGAATCTTT 2716
||||||||||| |||| |||| |||||||||||||
Sbjct 2708 TTGAGGATTTTCTTTTTATCATTGGTAGAATCTTT 2742
Score = 60.2 bits (32), Expect = 1e-07
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 2716 TTTTCATAATTTGTGACAGAATTGTTATCAAC 2747
||||||||||||||||||||||||||||||||
Sbjct 2783 TTTTCATAATTTGTGACAGAATTGTTATCAAC 2814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136454084960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5