BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493950

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40382.1 | Symbols:  | Cytochrome c oxidase subunit Vc famil...   523    4e-148


> AT5G40382.1 | Symbols:  | Cytochrome c oxidase subunit Vc family 
protein | chr5:16155086-16155683 REVERSE LENGTH=475
Length=475

 Score =  523 bits (283),  Expect = 4e-148
 Identities = 361/395 (91%), Gaps = 19/395 (5%)
 Strand=Plus/Plus

Query  1    ATGGCTAATGTTCCGAAGATCGGAAAGGCTGTTTATAAAGGACCAAGCGTAGTTAAAGAG  60
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTAATGTTCAGAAGATCGGAAAGGCTGTTTATAAAGGACCAAGCGTAGTTAAAGAG  60

Query  61   ATCATATATGGAATAACACTAGGCCTTGCGGTTGGAGGGCTGTGGAAAATGCATCATTGG  120
            ||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct  61   ATCATATATGGAATAACGCTCGGCTTTGCGGTTGGAGGGCTGTGGAAAATGCATCATTGG  120

Query  121  AACAACCAAAGACGAACGAAGGAGTTCTATGATTTACTCGAGAAGGGAGAAATCAGTGTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  AACAACCAAAGACGAACGAAGGAGTTCTATGATTTACTCGAGAAGGGAGAAATTAGTGTT  180

Query  181  GTCGTCGAAGATGAGTAGTT-G----AA--G--ATC-----AA----GAACCAAAAGGAA  222
            |||||||||||||||||||| |    ||  |  |||     ||    |||||||||||||
Sbjct  181  GTCGTCGAAGATGAGTAGTTTGCGTGAATTGTTATCTTTGGAATCAAGAACCAAAAGGAA  240

Query  223  TGCGTCTTGGCTTGTGTGAGGTATGATTTCAATGGTTTTGTTTCAATAAATTTTAGAACA  282
            || |||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||
Sbjct  241  TGTGTCTTGGCTTGTGTGAGGTATGATTTCAAACGTTTTGTTTGAATATATTTTAGAACA  300

Query  283  A-TGAGAGTTTACAAGATATCTTTAATGGTTAGTGTTTTGTTGATGAAGGATATATTGTA  341
            | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AATGAGAGTCTACAAGATGTCTTTAATGGTTAGTGTTTTGTTGATGAAGGATATATTGTA  360

Query  342  ATCAGTTTGCAAAAGCTATGTTTGTACTGCTACCG  376
            |||||||| ||||| || |||||||||||||||||
Sbjct  361  ATCAGTTTACAAAATCTTTGTTTGTACTGCTACCG  395



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17694247648


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5