BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493953
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40270.1 | Symbols: | HD domain-containing metal-dependent ... 2586 0.0
AT5G40290.1 | Symbols: | HD domain-containing metal-dependent ... 1694 0.0
> AT5G40270.1 | Symbols: | HD domain-containing metal-dependent
phosphohydrolase family protein | chr5:16093172-16097232 REVERSE
LENGTH=1783
Length=1783
Score = 2586 bits (1400), Expect = 0.0
Identities = 1650/1769 (93%), Gaps = 23/1769 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctctcCGCAGCTCTTAAAATCGCTTTCTCAATTCTCGTCGTTGTA-CCA 59
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||
Sbjct 12 TCTCTCTCTCTCTCTCTGCAGCTTTTAAAATCGCTTTCTCAATTCTCGTCGTTGTACCCA 71
Query 60 TTTCGGTTTCTCTCAACGTAACTGCATCACGGCGGCGAGTGACTGAGTTCGACGTGAAAT 119
|||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 72 TTTCAGTTTCTCTCAACGTAACTGCTTCACGGCGGCGAGTGAGTGAGTTCGACGTGAAAT 131
Query 120 TTCAACTGATGGGAGCGTATTGCAACGAAGACCTAAGTAGTTTACCGGTGTTCTCCGCCG 179
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 132 TTCAACTGATGGGAGCGTATTGCGACGAAAACCTAAGTAGTTTACCGGTGTTCTCCTCCG 191
Query 180 GTGCTCCGTCGAACGAGCTCCGGTTCAGCAAGCATGTCTACGATAACGTTCATGGAAACA 239
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GCGCTCCGGCGAACGAGCTCCGGTTCAGCAAGCATGTCTACGATAACGTTCATGGAAACA 251
Query 240 TCTATCTCGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTTCAAAGGCTTCGTG 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 252 TCTATCTCGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTTCAGAGGCTTCGTG 311
Query 300 AACTAAAGCAACTTGGAGTGACAAACATGGTATATCCTGGAGCTGTACATTCTAGATTTG 359
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 312 AACTAAAGCAACTTGGAGTGACAAACATGGTATATCCAGGAGCTGTACATTCGAGATTTG 371
Query 360 AGCACTCTTTAGGCGTGTATTGGCTTGCAGGCGAAACTGTTCAGAGGCTAAAAAGTTTCC 419
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 372 AGCACTCTCTAGGCGTGTATTGGCTTGCAGGCGAAACTGCTCAGAGGCTAAAAAATTTCC 431
Query 420 AGGGAATGGAGCTTGGTATTGACAATCATGATCTTCAGACTGTGAGACTTGCTGGACTTC 479
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 432 AGGGAATGGAGCTTGGTATTGACAATTATGATCTTCAGACTGTGAGACTTGCTGGACTTC 491
Query 480 TCCATGACATTGGCCATGGGCCTTTCAGTCATATGTTCGAGCGTGAGTTCCTCCCAAAGG 539
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 492 TCCATGATATTGGCCATGGGCCTTTCAGTCATATGTTTGAGCGTGAATTCCTTCCAAAGG 551
Query 540 TCATAAGTGGCTGTC-GTTGGTCTCATGAGTCAATGTCTGTTAACATGATTGACCATATA 598
||||||||| ||||| || |||||||||||| ||||||||| |||||||||||||||||
Sbjct 552 TCATAAGTGACTGTCAGT-GGTCTCATGAGTTAATGTCTGTAAACATGATTGACCATATG 610
Query 599 GTTGATACACATCACATCGATATTGATGCACAAATGCTGAAAAGAGTAAAGGACATGATA 658
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 611 GTTGATACACATCACATCGATATTGATGCTCAAATGCTGAAAAGAGTGAAGGACATGATA 670
Query 659 CTAGCTAGTACTGAATTTTCTCAGCTGAAAAGCAACGCAGAGAAACGTTTCTTGTATGAC 718
|||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||
Sbjct 671 CTAGCTAGTACTGAATTTTCACAGCTGAAAGGCAATGCAGAGAAGCGTTTCTTGTATGAT 730
Query 719 ATTGTTGCTAATGGTCGAAATGGGATTGATGTGGACAAGTTTGACTATCTTGTCCGTGAT 778
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 731 ATTGTTGCTAATGGTCGAAATGGGATTGATGTGGACAAGTTTGACTACCTTGTCCGTGAT 790
Query 779 TCTCGAGCTTGTGGTCTGGGATGCAATTTTCAGTTCCAAAGACTGACAGAGACAATGAGA 838
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 791 TCTCGAGCTTGTGGACTGGGATCCAATTTTCAATTCCAAAGACTGACAGAGACGATGAGA 850
Query 839 GTCATGGACAATGAAATCTGCTACCGCGCTAAGGAGTATCGTAATGTCCACAAGCTATTT 898
||| |||||||||||||||||| |||||| |||||||||| || |||||||||| |||||
Sbjct 851 GTCCTGGACAATGAAATCTGCTTCCGCGCCAAGGAGTATCTTAGTGTCCACAAGTTATTT 910
Query 899 GCGACTCGAGCTGATCTTTATCGAACTGTCTACACGCATCCAAAAGTAAAGGCGATAGAG 958
|| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 911 GCAACTCGAGCTGATCTTTATCGAACCGTCTACACGCATTCGAAAGTAAAGGCGATAGAG 970
Query 959 CTTATGATAGTAGATGCCATGGTCAAAGCTAACGATT-TCTTGGGGATTTCTTCTTTCAT 1017
|| |||||||||||||||||||||||||| ||| || | |||| ||||||||| | ||
Sbjct 971 CTGATGATAGTAGATGCCATGGTCAAAGCCAACAATCAT-TTGGAAATTTCTTCTATGAT 1029
Query 1018 TAGTGACCCATCTGAATACTGGAAGTTAGACGACACAATCCTCAAAACCATCGAAATAGC 1077
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1030 TAATGACCCATCTGAATACTGGAAGTTAGACGACACAATCCTCAAAACTATCGAAATAGC 1089
Query 1078 TCCAGATCCAGAACTTGCAGAAGCTAAAGAGCTGATACTCCGTGTTCGCAGAAGGCAGTT 1137
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1090 TCCAGATCCAGAACTTGCAGAAGCGAAAGAGCTGATACTCCGTGTTCGCAGAAGGCAGTT 1149
Query 1138 GTACCAATTCTGTAACGAGTATGCGGTTCCAAAGGAGAACATCGATCATTTCAAAGCCGT 1197
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||
Sbjct 1150 GTACCAATTCTGTAACGAATATGCGGTTCCAAAGGACAAAATCGATCATTTCAAAGCTGT 1209
Query 1198 CACTGCTCAGGATATCATCTGTTCTCAGAAGCACACAAGCTTGACACTAAAAGAAGATGA 1257
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1210 CACTCCTCAAGATATCATCTGTTCTCAGAAGCACACAAGCTTGACACTAAAAGAAGAAGA 1269
Query 1258 TATCGCTGTTACGAACGTCAAGATTGATTTAGCTCGTGGGAGAGAGAATCCTCTTGAATG 1317
||| |||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 1270 TATAGCTGTTACAAACGTCAAGATTGACTTGGCTCGTGGGAGAGAAAATCCGCTTGAATG 1329
Query 1318 CATCAACTTCTTTGAGGATTATGATAGTGCAGAGAAGTTTG-GTATACCTGAGGACCGAG 1376
||||||||||| | ||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 1330 CATCAACTTCTATAAGGATTATGATAGTGCAGAGAAGTTTGTG-ATACCTGAGGACAGAG 1388
Query 1377 TCAGTCACTTGTTACCAACAACATATCAAGACATGATAGTGAGAGTTTATGCCAAAAAAC 1436
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1389 TCAGTCACTTGTTACCAACAACATATCAAGACATGATAGTGAGAGTATATGCCAAAAAAC 1448
Query 1437 CAGAATTGGTAGAAGCAGTTTCTGAGGCGTTTGAAAACTTCCAAATGAGAACGTATGGGG 1496
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1449 CAGAATTGGTAGAAGCAGTTTCTGAGGCATTTGAAAACTTCCAAATGAGAACGTATGGAA 1508
Query 1497 TCAAAACTCAAGTACACGCAACACCTGAGAAAAAGAAAAGGCGTGTGATGTAACTAC-CG 1555
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1509 TCAAAGCTCAAGTACACGCAACACCTGAGAAAAAGAAAAGGCGTGTGATGTAATTACACG 1568
Query 1556 TGGCCTTTAATTCATTTCATTTCTTACGGTTTTATATTGGTGTTTA-GCGTCTTGAAACT 1614
||||||| ||||||||||||||| |||||||||| ||||| |||| | |||||||||||
Sbjct 1569 TGGCCTT-AATTCATTTCATTTCAAACGGTTTTATTTTGGTTTTTAAG-GTCTTGAAACT 1626
Query 1615 TTAAATACGGATA--TGTATATAATCTCTACTTC-TTAGACTTACGATATCGAAGCCTTG 1671
||| ||| |||| |||| ||| | | | | | |||| ||||||||||||||||||||
Sbjct 1627 TTAGATATGGATGCGTGTACATA-TAGC-A-TGCCTTAGTCTTACGATATCGAAGCCTTG 1683
Query 1672 GATTTAAACCAGCCT-TT-ATACGTAAGAGAAAAGGAAAAGCAAGGCACCATTTTCTTAA 1729
|||| | || ||| | || |||||||||| ||| |||||||||||||||||||| |||||
Sbjct 1684 GATTCAGAC-AGCGTGTTTATACGTAAGA-AAA-GGAAAAGCAAGGCACCATTT-CTTAA 1739
Query 1730 GATTTCGGATTTCGTACGGTTTTATTTTA 1758
||||||||||||||||||||||||| |||
Sbjct 1740 GATTTCGGATTTCGTACGGTTTTATCTTA 1768
> AT5G40290.1 | Symbols: | HD domain-containing metal-dependent
phosphohydrolase family protein | chr5:16105259-16108501 REVERSE
LENGTH=1347
Length=1347
Score = 1694 bits (917), Expect = 0.0
Identities = 1204/1337 (90%), Gaps = 42/1337 (3%)
Strand=Plus/Plus
Query 184 TCCGTCGAACGAGCTCCGGTTCAGCAAGCATGTCTACGATAACGTTCATGGAAACATCTA 243
|||| |||| || |||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct 36 TCCGGCGAATGAACTCCGGTTCAGCAAACATGTCCACGACAACGTTCATGGAAACATCTA 95
Query 244 TCTCGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTTCAAAGGCTTCGTGAACT 303
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 96 TCTTGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTCCAAAGGCTTCGTGAACT 155
Query 304 AAAGCAACTTGGAGTGACAAACATGGTATATCCTGGAGCTGTACATTCTAGATTTGAGCA 363
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 156 AAAGCAACTTGGAGTGACAAACATGGTATATCCAGGAGCTGTACATTCTAGATTTGAGCA 215
Query 364 CTCTTTAGGCGTGTATTGGCTTGCAGGCGAAACTGTTCAGAGGCTAAAAAGTTTCCAGGG 423
|||| |||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 216 CTCTCTAGGTGTGTATTGGCTTGCAGGTGAAACTGTTCAGAGGCTCAAAACTTTCCAGGG 275
Query 424 AATGGAGCTTGGTATTGACAATCATGATCTTCAGACTGTGAGACTTGCTGGACTTCTCCA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 AATGGAGCTTGGTATTGACAATCATGATCTTCAGACTGTGAGACTTGCTGGACTTCTCCA 335
Query 484 TGACATTGGCCATGGGCCTTTCAGTCATATGTTCGAGCGTGAGTTCCTCCCAAAGGTCAT 543
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 336 TGACATTGGCCATGGGCCTTTCAGTCATATGTTTGAGCGTGAGTTCCTCCCAAAGGTCAT 395
Query 544 AAGTGGCTGTC-GTTGGTCTCATGAGTCAATGTCTGTTAACATGATTGACCATATAGTTG 602
||||||||||| || |||||||||||| ||||||| | |||||||||||| ||||||| |
Sbjct 396 AAGTGGCTGTCAGT-GGTCTCATGAGTTAATGTCTATAAACATGATTGACTATATAGTCG 454
Query 603 ATACACATCACATCGATATTGATGCACAAATGCTGAAAAGAGT-AAAGGACATGATACTA 661
||||||||||||| ||| |||||||| ||||||| |||||||| |||| |||||||||||
Sbjct 455 ATACACATCACATAGATGTTGATGCAAAAATGCTAAAAAGAGTCAAAG-ACATGATACTA 513
Query 662 GCTAGTACTGAATTTTCTCAGCTGAAAAGCAACGCAGAGAAACGTTTCTTGTATGACATT 721
|||||||||||| |||| |||||||| |||| |||||||| ||||||||||||||||||
Sbjct 514 GCTAGTACTGAAGTTTCAGAGCTGAAAGGCAATGCAGAGAAGCGTTTCTTGTATGACATT 573
Query 722 GTTGCTAATGGTCGAAATGGGATTGATGTGGACAAGTTTGACTATC-TTGTCCGTGATTC 780
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||| || ||
Sbjct 574 GTTGCTAATGGTCGAAATGGGATTGATGTGGATAAGTTTGACTA-CATTGTCCGAGACTC 632
Query 781 TCGAGCTTGTGGTCT-GGGATGCAATTTTCAGTTCCAAAGACTGACAGAGAC-AATGAGA 838
|||||||||||| || ||| ||||| |||||||| |||||||| ||||| || |||||||
Sbjct 633 TCGAGCTTGTGGACTAGGG-TGCAACTTTCAGTTTCAAAGACTAACAGA-ACCAATGAGA 690
Query 839 GTCATGGACAATGAAATCTGCTACCGCGCTAAGGAGTATCGTAATGTCCACAAGCTATTT 898
||||| ||||||||||||||||||| ||| ||||| ||||||| |||||||||| | |||
Sbjct 691 GTCATAGACAATGAAATCTGCTACCCCGCCAAGGAATATCGTACTGTCCACAAGTTGTTT 750
Query 899 GCGACTCGAGCTGATCTTTATCGAACTGTCTACACGCATCC-AAAAGTAAA-GGCGATAG 956
|| |||||||||||||||| | |||| ||||||| |||||| |||| ||| ||| ||||
Sbjct 751 GCAACTCGAGCTGATCTTTGTGGAACCGTCTACATGCATCCCAAAA--AAATGGCCATAG 808
Query 957 AGCTTATGATAGTAGATGCCATGGTCAAAGCTAACGATTTCTTGGGGATTTCTTCTTTCA 1016
||||||||||||||||||| ||||||||||| ||| || |||||| |||||||||| | |
Sbjct 809 AGCTTATGATAGTAGATGCAATGGTCAAAGCCAACAATGTCTTGGAGATTTCTTCTATGA 868
Query 1017 TTAGTGACCCATCTGAATACTGGAAGTTAGACGACACAATCCTCAAAACCATCGAAATAG 1076
||| ||| || ||| |||||||||||||||||||||||||||||||||| || |||| |
Sbjct 869 TTAATGATCCTTCTCAATACTGGAAGTTAGACGACACAATCCTCAAAACGATTGAAAGAT 928
Query 1077 CTCCAGATCCAGAACTTGCAGAAGCTAAAGAGCTGATACTCCGTGTTCGCAGAAGGCAGT 1136
||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 929 CTCCAGATCCAGAACTTGCAGAAGCTAAAGAGCTGATACTCCGCCTTAGCAGAAGGCACT 988
Query 1137 TGTACCAATTCTGTAACGAGTATGCGGTTCCAAAGGAGAACATCGATCATTTCAAAGCCG 1196
|||||||||||||||||||||||||||| |||||||| || ||||||||||||||| ||
Sbjct 989 TGTACCAATTCTGTAACGAGTATGCGGTACCAAAGGACAAAATCGATCATTTCAAA-CCT 1047
Query 1197 -TCACTGCTCAGGATATCATCTGTTCTCAGAAGCACACAAGCTTGACACTAAAAGAAGAT 1255
||||| || | ||||||||||||| || || | | | ||||||
Sbjct 1048 ATCACTCCTGAAGATATCATCTGTT-TCT----CA-----G----A-A------GAAGAT 1086
Query 1256 GATATCGCTGTTACGAACGTCAAGATTGATTTAGCTCGTGGGAGAGAGAATCCTCTTGAA 1315
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1087 -ATA--GCTGTTACAAACGTCAAGATTGATTTAGCTCGTGGGAGAGAAAATCCTCTTGAA 1143
Query 1316 TGCATCAACTTCTTTGAGGATTATGATAGTGCAGAGAAGTTTG-GTATACCTGAGGACCG 1374
||||||||||||| | |||||||| |||||||||||||||||| | |||||||||||| |
Sbjct 1144 TGCATCAACTTCTATAAGGATTATAATAGTGCAGAGAAGTTTGTG-ATACCTGAGGACAG 1202
Query 1375 AGTCAGTCACTTGTTACCAACAACATATCAAGACATGATAGTGAGAGTTTATGCCAAAAA 1434
||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1203 AGTTAGCCACTTGTTACCAACAACATATCAAGAAATGATAGTGAGAGTATATGCCAAAAA 1262
Query 1435 ACCAGAATTGGTAGAAGCAGTTTCTGAGGCGTTTGAAAACTTCCAAATGAGAACGTATGG 1494
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1263 ACCAGAATTGGTAGAAGCAGTTTCTGAGGCATTTGAAAACTTCCAAATGAGAACGTATGG 1322
Query 1495 GGTCAAAACTCAAGTAC 1511
||||| |||||||||
Sbjct 1323 AATCAAAGCTCAAGTAC 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5