BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493964
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40260.1 | Symbols: SWEET8, AtSWEET8 | Nodulin MtN3 family p... 1105 0.0
> AT5G40260.1 | Symbols: SWEET8, AtSWEET8 | Nodulin MtN3 family
protein | chr5:16089758-16091753 FORWARD LENGTH=1030
Length=1030
Score = 1105 bits (598), Expect = 0.0
Identities = 790/878 (90%), Gaps = 32/878 (4%)
Strand=Plus/Plus
Query 1 ATTAGGTTTTCTTCTACACTTGGTCTTCTTCATTAGCGCTCTTCTTCAAtc--tctctct 58
|||||||||||||||||||||| ||||||||||| || ||||||||| ||| |||||||
Sbjct 2 ATTAGGTTTTCTTCTACACTTGTTCTTCTTCATTTGCTCTCTTCTTC-ATCAATCTCTCT 60
Query 59 ctctTTT-T--ACGGCGATTTCACAATGGTTGATGCGAAACAAGTTCGTTTCATCATCGG 115
|| |||| | |||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 61 CT-TTTTGTAAACGGCGATTTTAAAATGGTTGATGCAAAACAAGTTCGTTTCATCATCGG 119
Query 116 AGTTATCGGGAATGTTATCTCCTTTGGCCTCTTTGCCGCACCAGCGAAAACGTTT-TGGA 174
||||||||| ||||||||||||||||| |||||||||||||||||||| || ||| ||||
Sbjct 120 AGTTATCGGAAATGTTATCTCCTTTGGTCTCTTTGCCGCACCAGCGAAGAC-TTTCTGGA 178
Query 175 GGATCTTCAAGAAGAAATCAGTGGAGGAGTTTTCGTATGTGCCATACGTAGCAACGGTGA 234
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 179 GGATCTTCAAGAAGAAATCAGTGGAAGAGTTTTCGTATGTGCCGTACGTAGCAACGGTGA 238
Query 235 TGAATTGTATGTTGTGGGTGTTTTACGGTCTCCCTGTGGTTCACAAAGATAGTTA-TCTA 293
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 239 TGAATTGTATGTTGTGGGTGTTTTACGGTCTCCCTGTGGTTCACAAAGACAG-TATTCTA 297
Query 294 GTGTCTACCATTAATGGTGTTGGGTTAGTCATCGAACTTTTCTACGTTGGTGTCTACTTG 353
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 GTTTCAACCATTAATGGTGTTGGGTTAGTTATCGAACTTTTCTACGTTGGTGTCTACTTG 357
Query 354 ATGTACTGTGGTCACAAGCAGAACTATCGTAA-GAAGATTTTGCTATACTTA-CTTGGTG 411
|||||||||||||||||| ||||| |||| || ||| |||||| || |||| | | ||
Sbjct 358 ATGTACTGTGGTCACAAGAAGAACCATCG-AAGGAACATTTTGGGATTCTTAGC-TCTTG 415
Query 412 AAGTTGTTTCT-GTTGCGATTATCGTTCTTATTACGCTCTTCGTGATTAAGAATGATTTC 470
||||| ||| | || | | |||| |||||||||||||||| | | ||||| ||||||
Sbjct 416 AAGTTATTT-TGGTGGTGGCTATCATTCTTATTACGCTCTTTGCGCTTAAGGGTGATTTT 474
Query 471 ATTAAGCAAACATTTGTTGGTATTATTTGCGATATCTTCAACATTGCTATGTATGCATCT 530
|||||||||||||||||||| | ||||||||| ||||||||||||||||||||| | ||
Sbjct 475 GTTAAGCAAACATTTGTTGGTGTGATTTGCGATGTCTTCAACATTGCTATGTATGGAGCT 534
Query 531 CCTTCATTGGCCATTATTACAGTGGTAAAAACAAAGAGTGTTGAATACATGCCATTCTTG 590
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCTTCATTGGCCATTATTAAAGTGGTAAAAACAAAGAGTGTTGAATACATGCCATTCTTG 594
Query 591 TTGTCTTTGGTCTGTTTCGTTAATGCTGCAATTTGGACTTCTTACTCGCTCATCTTCAAG 650
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 595 TTGTCTTTGGTCTGTTTCGTTAATGCTGGAATTTGGACTACTTACTCGCTCATCTTCAAG 654
Query 651 ATCGATTACTACGTCCTCGCAAGTAATGGGATTGGAACGTTTTTGGCCCTTTCTCAGTTG 710
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 655 ATCGATTACTACGTCCTCGCAAGTAATGGGATTGGAACCTTTTTGGCACTTTCTCAGTTG 714
Query 711 ATAGTGTACTTTATGTACTACAAATCAACTCCAAAGAAGGAGAAGACGGTGAAGCCATCA 770
||||||||||| |||||||| || |||||||||||| | ||||||||||||||||||||
Sbjct 715 ATAGTGTACTTCATGTACTATAAGTCAACTCCAAAG--G-AGAAGACGGTGAAGCCATCA 771
Query 771 GAAGTTGAGATTCCGGCAACGAACAGGGTTT-G-A--------CTTTGGATTCAATCTTT 820
|||||||||||| | || ||| | ||||||| | | |||||||||| |||||
Sbjct 772 GAAGTTGAGATTTCTGCTACGGAGAGGGTTTAGGAGAATTGTGCTTTGGATTCTATCTTC 831
Query 821 TTACGTACATT--ACATACACAATTTGTGTGTAtgttt 856
||||||||||| |||||||||||||||||||||||||
Sbjct 832 TTACGTACATTTTACATACACAATTTGTGTGTATGTTT 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48124312826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5