BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493966
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40250.1 | Symbols: | RING/U-box superfamily protein | chr5... 2767 0.0
> AT5G40250.1 | Symbols: | RING/U-box superfamily protein | chr5:16085764-16087543
FORWARD LENGTH=1780
Length=1780
Score = 2767 bits (1498), Expect = 0.0
Identities = 1689/1780 (95%), Gaps = 18/1780 (1%)
Strand=Plus/Plus
Query 1 ATAGAAGAGAGAGAAAGCAAGAGGAAAGAGAGTTCCTTT-ACTCTCTCTTCTTCCTCTGC 59
||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATAGAAGAGAGAGAAAGGACGAAGAAAGAGAGTTCCTTTAACTCTCTCTTCTTCCTCTGC 60
Query 60 AAATCTGACATATTTGaa--aaaattaaaaaaGCCCTCTTTGATTAGGGTTTTGTCTCAC 117
|||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 61 AAATCTGACATA-TTGAACCAAACCAAAAAAAGCCCTCTTTGATTAGGGTTTTGTGTCA- 118
Query 118 TTTTTCTGAGAATCTGGAGGGAGCTTTTAGGTGAGTTTTGTGTATCTCTGATGTTGATGT 177
||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 119 --------AGATTCTGGAGAGAGCTTTTAGGTGAGTTTTGTGTATCTCTGATGTTGATGT 170
Query 178 TATTGAAATTGGAACTCTTCTCCACTTAACTTGGAGTTG-TTTG-TTTTTGATTGAGCTT 235
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 171 TATTGAAATTGGAACTCTTCTCCACTTAACTTGGAGTTGTTTTGTTTTTTGATTGAGCTT 230
Query 236 TTGAGATCTTGAAAATTGAGATCttttttttttttGTTTCTAAGTGACCTAAATCTTACA 295
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 231 TTGAGATCTTGAAAATTGAGATCTTGGAGTTGTTTGTTTCTAAGTGACCTAAATCTTACA 290
Query 296 AGATGTCTTGGGTTCGATTCAAAATTGAGCAAAAAGATGGGAACTTTGCGTACCCACCAC 355
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 291 AGATGTCTTGGGTTCGATTCACAATTGAGCAAAAAGATGGGAACTTTGCGTACCCACCAC 350
Query 356 CGTTTTACAAAGACCCAATTCTTTCTCCGCCGTCTCCTCCGCCACCGTCGTCCGGTAACA 415
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 351 CGTTTTACAAAGACCCAATTCTTTCTCCGCCGTCTCCTCCACCACCGTCGTCCGGTAACA 410
Query 416 GAATCAGTCCGGCGGTTTTGTTTGTAATTGTGATTCTAGCTGTCTTGTTCTTCATTTCTG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GAATCAGTCCGGCGGTTTTGTTTGTAATTGTGATTCTAGCTGTCTTGTTCTTCATTTCTG 470
Query 476 GGCTTCTTCATTTGCTGGTTAGGTTTCTTATTAAACATCCTTCTGCTACTTCTTCTTCAA 535
|||||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||
Sbjct 471 GGCTTCTTCATTTGCTCGTCAGGTTTCTTATTAAGCATCCTTCTGCTACTGCTTCTTCAA 530
Query 536 GGTCTAATAGATTCCCTGAGATTTCAACTAGTGATGCTCTTCAAAGGCAGCTTCAACAGC 595
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 531 GGTCTAATAGATTCCCAGAGATCTCAACTAGTGATGCTCTTCAAAGACAGCTTCAACAGC 590
Query 596 TTTTTCATTTGAATGATTCTGGTCTTGATCAAGCTTTTATTGACGCTTTACCTGTTTTTC 655
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 591 TTTTTCATTTGAATGATTCTGGTCTTGATCAAGCTTTTATCGATGCTTTACCTGTTTTTC 650
Query 656 ACTACAAAGAGATTGTTGGTAGTGGTAGTG-T--TGGTGGTAATGGTGCTGCTCAAGAGC 712
||||||| |||||||||||||||| | ||| | ||||||||||||||||||||||||||
Sbjct 651 ACTACAAGGAGATTGTTGGTAGTGCTGGTGGTGGTGGTGGTAATGGTGCTGCTCAAGAGC 710
Query 713 CATTTGATTGCGCGGTTTGTCTCTGTGAGTTTTCTGAGAAAGATAAGCTGAGATTGTTGC 772
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 711 CGTTTGATTGCGCGGTTTGTCTCTGTGAGTTCTCTGAGAAAGATAAGCTGAGGTTGTTGC 770
Query 773 CAATGTGTAGTCATGCTTTTCATTTGAACTGTATTGATACTTGGCTTCAGTCAAATTCGA 832
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CAATGTGTAGCCATGCTTTTCATTTGAACTGTATTGATACTTGGCTTCAGTCAAATTCGA 830
Query 833 CTTGTCCTCTTTGTCGTGGCACACTCTTTTCCCCTGGTTTCTCAATGGAGAACCCGATGT 892
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 831 CTTGTCCTCTTTGTCGTGGTACTCTCTTTTCCCCTGGTTTCTCAATGGAGAACCCGATGT 890
Query 893 TTGATTTCGATGATATAAGAGAAGATGAAGAGGGTGTGACAGAGAATGGAAGCCAGAAAA 952
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 891 TTGATTTCGATGATATAAGAGAAGACGAAGAGGGTGTGACCGAGAATGGAAGTCAGAAAA 950
Query 953 CTATGGAGATCCAAGAAATTGTTGTGGAGAAAGGAGTTTTACCGGTGAGATTGGGGAAAT 1012
|||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 951 CTATGGAGATTCAAGAAATCGTTGTGGAGAAAGGTGTTTTACCGGTTAGATTGGGGAAAT 1010
Query 1013 TCAAGAGGCTAGACAATGTTGGTAATGGTCAGGGTCAGGATGTTGTTGCTGGAGGAGAGA 1072
| |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1011 TTAAGAGGCTTGACAATGTTGGTAATGGCCAAGGTCAGGATGTTGTTGCCGGAGGAGAGA 1070
Query 1073 CTAGTAGCAGTAATTTGGATGCAAGGAGATGTTTCTCAATGGGTTCGTATCAGTATATAC 1132
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CTAGTAGTAGTAATTTGGATGCAAGGAGATGTTTCTCAATGGGTTCGTATCAGTATATAC 1130
Query 1133 TCGGTAACTCAGAACTTAAAGTCCCGTTTGCCAAAGATAGACTGCCGAGTTTGAAACCTC 1192
|||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 1131 TCGGTAACTCGGAACTTAAAGTCCCGTTTGCCAACGACAGACTGCCGCGTTTGAAACCTC 1190
Query 1193 AGGACAAAGAATCTGAGCAGACAGGGAATACATCATCAGAAGACAACAAAAAGATCAATA 1252
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1191 AGGACAAAGAATCTGAGCAGACAGGGAATTCATCATCAGAAGACAATAAAAAGATCAATA 1250
Query 1253 GTGTGGCTAAAGGCGAGAGCTTTTCGGTTTCGAAGATTTGGTTGTGGCCAAAGAAAGATA 1312
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1251 CTGTGGCTAAAGGAGAGAGCTTTTCGGTTTCGAAGATTTGGTTGTGGCCTAAGAAAGATA 1310
Query 1313 AATTCTCTTCAGATGCTCAAAGAAGGTTGCCTTCTTCATCACTTAACGTAGATGATCTTC 1372
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1311 AGTTCTCTTCAGATGCTCAAAGAAGGTTGCCTTCTTCATCACTTAACGTTGATGATCTTC 1370
Query 1373 CGAAACTTCCATGGATGGAAGAACATAAGAAGCTGGAGAACGACGAAAGGTAGTATCTTT 1432
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1371 CGAAACTTCCATGGATGGAAGAACATAAGAAGCTGGAGAACGACGGAAGGTAGTATCTTT 1430
Query 1433 TGCTCATTTTTCAATCAAAATCATCGATACTTAGGGTTGTTACTGATCATATTTTGGGGG 1492
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 TGCTCATTTTTCAACCAAAATCATCGATACTTAGGGTTGTTACTGATCATATTTTGGGGG 1490
Query 1493 GTTCACAATTATCTGTTGTACCATATTGTTCAAAAGGGTTTGATTCTTGATAAGAACTTC 1552
|||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1491 GTTCGTAATCATATGTTGTACCATATTGTTCAAAAGGGTTTAATTCTTGATAAGAACTTC 1550
Query 1553 AGTTGCATTATGCTTGTTAATCATATGAGATGAAATTAAATTACGTATGCTCAACAATAA 1612
||||| ||||||||||||||||||||||||| ||||| ||||| | ||||||||||| ||
Sbjct 1551 AGTTGGATTATGCTTGTTAATCATATGAGATCAAATTTAATTATGCATGCTCAACAAAAA 1610
Query 1613 TGGATTCCAAAAGACTGATGctttagctttatttttattatctttgtctcttttttcttc 1672
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1611 TGGATTCCAAAAGACTGATGCTTTAGCTTTATTTTCATTATCTTTGTCTCTTTTTTCTTC 1670
Query 1673 actttggagtcactggttctctttattttcttcttttccatatactttcctttACTCTCT 1732
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 ACTTTGGGGTCACTGGTTCTCTTTATTTTCTTCTTTTCCATATACTTTCCTTTACTCTCT 1730
Query 1733 CAACAAATTCACTGTTAACTTTATAAATATAAATGTATTT 1772
||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CAACAAATTCACTGTTAACTTTATAAATATAAATGTATTT 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87650151570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5