BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493972
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40200.1 | Symbols: DegP9 | DegP protease 9 | chr5:16070330-... 3171 0.0
> AT5G40200.1 | Symbols: DegP9 | DegP protease 9 | chr5:16070330-16073314
FORWARD LENGTH=2064
Length=2064
Score = 3171 bits (1717), Expect = 0.0
Identities = 1935/2039 (95%), Gaps = 19/2039 (1%)
Strand=Plus/Plus
Query 1 AATTTCAAATTCGCTGAGAAGTTACAATCCAGAGGAAAAGATCATCTTTTTCCTTCTGGG 60
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 AATTTCAATTTCACTGAGAAGTTACAATCCAGAGGAAAAGATTATCTTTTTCCTTCTGGG 60
Query 61 TTGATGGAAAAGATGAAGACTTCTCAAAAGAGAGGACGCAAACACAAAAGACAAGATGCT 120
|||| |||||||||||||| |||| | ||||||||||| ||||||||||| |||||||||
Sbjct 61 TTGAGGGAAAAGATGAAGAATTCTGAGAAGAGAGGACGTAAACACAAAAGGCAAGATGCT 120
Query 121 TCATCGGCGGGAAACGCCGGCGGCGAAGTTGAAGAAGCTTCCGTTAACGAAGCATCGTTA 180
|||||||||| ||||||||||||||||||| |||||||||| | ||| ||||||||||||
Sbjct 121 TCATCGGCGGAAAACGCCGGCGGCGAAGTTAAAGAAGCTTCGGCTAATGAAGCATCGTTA 180
Query 181 TCTCAATCCCCTGAGCCTGTTTCAGCTTCTGAAGCAAACCCATCTCCGTCGCGACGCAGT 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CCTCAATCCCCTGAGCCTGTTTCAGCTTCTGAAGCCAACCCATCTCCGTCGCGACGCAGT 240
Query 241 CGTGGGAGAGGTAAAAAGCGTAGATTGAACAATGAATCAGAAGCTAATAACCAGAGGACT 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CGTGGGAGAGGTAAAAAGCGTAGATTGAACAATGAATCAGAAGCTGGTAACCAGAGGACG 300
Query 301 TCGTCACCAGAGCGTAGTAGATCTCGTCTTCATCATTCTGATTCGAAGAATGGTGATTGT 360
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 301 TCGTCACCAGAGCGTAGTAGATCTCGTCTTCATCACTCTGATACGAAGAATGGTGATTGT 360
Query 361 AGCAATGGGATGATTGTTTCAGCAACTACTGAATCGATTCCTGCTGCTCCGAGTTGGGAA 420
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AGCAATGGGATGATTGTTTCAACAACTACTGAATCGATTCCCGCTGCTCCGAGTTGGGAA 420
Query 421 ACAGTGGTTAAAGTTGTTCCTTCAATGGATGCTGTGGTTAAAGTCTTTTGTGTTCACACT 480
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 ACTGTTGTTAAAGTTGTTCCTTCAATGGATGCTGTTGTTAAAGTCTTTTGTGTTCACACT 480
Query 481 GAACCTAATTTCTCGTTGCCATGGCAAAGGAAAAGACAGTATAGTTCTGGTAGTAGTGGT 540
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 GAGCCTAATTTCTCGTTGCCATGGCAAAGGAAACGACAGTATAGTTCTGGTAGTAGTGGT 540
Query 541 TTTATTATTGGAGGAAGAAGAGTTTTGACTAATGCACATTCTGTTGAGCATCATACTCAA 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTATTATTGGGGGAAGAAGAGTTTTGACTAATGCACATTCTGTTGAGCATCATACTCAA 600
Query 601 GTTAAACTCAAGAAGCGTGGCTCTGATACTAAGTATTTGGCGACAGTCTTGGCCATTGGA 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GTTAAACTCAAGAAGCGTGGCTCTGATACTAAGTATTTGGCTACAGTCTTGGCCATTGGA 660
Query 661 ACTGAATGTGACATTGCTTTGTTGACTGTTACGGATGATGAGTTTTGGGAAGGAGTATCT 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 ACTGAATGTGACATTGCTTTGTTGACAGTTACGGATGATGAGTTTTGGGAAGGAGTATCT 720
Query 721 CCTGTGGAGTTTGGCGATTTACCAGCTTTGCAAGATGCTGTTACTGTTGTTGGTTATCCA 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCTGTGGAGTTTGGTGATTTACCAGCTTTGCAAGATGCTGTTACTGTTGTTGGTTATCCA 780
Query 781 ATTGGTGGTGATACAATCTCTGTCACAAGCGGTGTTGTTTCGCGGATGGAGATATTGTCG 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 ATTGGTGGTGATACAATCTCTGTCACAAGCGGTGTTGTTTCCCGGATGGAGATATTGTCG 840
Query 841 TATGTGCATGGATCAACCGAGCTTTTGGGATTACAGATTGATGCAGCTATTAATTCTGGG 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 TATGTGCATGGATCAACCGAGCTTTTGGGATTGCAGATTGATGCAGCTATTAATTCTGGG 900
Query 901 AATTCTGGTGGTCCTGCATTTAACGACAAAGGAAAGTGTGTTGGCATTGCGTTTCAGTCG 960
||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||
Sbjct 901 AATTCTGGTGGTCCTGCATTTAATGATAAAGGAAAATGTGTTGGTATTGCATTTCAGTCT 960
Query 961 TTGAAACACGAAGATGCTGAGAATATTGGTTATGTCATTCCCACACCAGTGATTGTACAT 1020
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 TTGAAACACGAAGATGCTGAGAATATTGGTTATGTCATTCCCACACCGGTGATTGTACAT 1020
Query 1021 TTCATTCAAGATTATGAGAAGCATGATAAATACACAGGTTTTCCTGTTCTTGGAATTGAG 1080
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1021 TTCATTCAAGATTATGAGAAGCATGATAAATACACAGGGTTTCCTGTTCTCGGAATTGAG 1080
Query 1081 TGGCAAAAGATGGAAAATCCTGATTTGCGTAAGTCAATGGGTATGGAATCTCATCAAAAG 1140
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 TGGCAAAAGATGGAAAATCCTGATTTGCGGAAGTCAATGGGTATGGAATCTCATCAAAAG 1140
Query 1141 GGAGTGCGGATAAGAAGAATCGAGCCAACCGCCCCAGAATCACAAGTTTTGAAGCCTTCC 1200
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 GGAGTGCGGATTAGAAGAATTGAGCCAACCGCCCCAGAATCACAAGTTTTGAAGCCGTCT 1200
Query 1201 GATATTATCCTTAGTTTTGACGGAGTTAATATCGCTAATGATGGAACTGTTCCGTTTAGG 1260
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1201 GATATTATCCTTAGTTTTGATGGAGTTAATATCGCTAATGATGGGACTGTTCCATTTAGG 1260
Query 1261 CATGGAGAAAGAATTGGCTTTAGCTATCTTATATCTCAAAAGTACACTGGAGATTCTGCT 1320
||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1261 CATGGAGAACGAATTGGCTTTAGCTACCTTATATCCCAAAAGTACACTGGAGATTCTGCT 1320
Query 1321 CTTGTGAAGGTTCTACGTAAA-AAAGAAATATTAGAATTCAACATAAAACTTGCAATCCA 1379
|| |||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1321 CTCGTGAAGGTTCTACG-AAACAAAGAAATATTAGAGTTCAACATAAAACTTGCAATCCA 1379
Query 1380 CAAGAGGCTAATCCCTGCACACATAAGTGGCAAACCTCCTTCGTACTTCATTGTTGCTGG 1439
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 CAAGAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGG 1439
Query 1440 CTTTGTTTTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGTATGGAAAAGAATATGA 1499
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGTATGGAAAAGAATATGA 1499
Query 1500 ATTTGACGCGCCTGTCAAGCTATTGGAAAAACATCTTCATGCAATGGCTCAATCCGTGGA 1559
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1500 ATTTGACGCACCTGTCAAGCTATTGGAGAAACATCTTCATGCAATGGCTCAATCCGTGGA 1559
Query 1560 CGAGCAGCTTGTTGTAGTTTCACAGGTTCTTGTTTCTGACATTAACATTGGATACGAGGA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1560 CGAGCAGCTTGTTGTAGTTTCACAGGTTCTTGTTTCTGACATTAACATTGGTTATGAAGA 1619
Query 1620 GATTGTCAACACCCAGGTTCTCGC-TTTCAATGGCAAACCTGTGAAAAACTTGAAAGGTT 1678
||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1620 GATTGTCAACACCCAGGTTGTCGCCTTT-AATGGCAAACCTGTGAAAAACTTGAAAGGTT 1678
Query 1679 TAGCTGAGATGGTGGAGAAGTGTGAGGATGAATATATGACGTTTAATCTAGATTATGATC 1738
|||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1679 TAGCTGGGATGGTGGAGAATTGTGAGGATGAATATATGAAGTTTAATCTGGATTATGATC 1738
Query 1739 AGATTGTTACTCTGGAAACTAAGACAGCAAAGGAAGCAACTTTAGATATTCTGACCACCC 1798
|||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1739 AGATTGTTGTTCTGGACACTAAGACAGCAAAGGAAGCAACATTAGATATTCTGACCACAC 1798
Query 1799 ATTGCATACCTTCTGCTATGTCTGATGATCTCAAGACTGAAGAAAGAAAGTGAAACAGGA 1858
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1799 ATTGCATACCTTCTGCTATGTCTGATGATCTCAAGACTGAAGAAAGAAACTGAAACAGAA 1858
Query 1859 GGCACAACCATACACC-GAAGGAGAGAAAGAGAGAGTTTGGTCCATTGGAAGGACAGAA- 1916
|| | | ||||| ||| |||||||||||||||||| ||| |||||| ||||||||| ||
Sbjct 1859 GG-A-A-CCATA-ACCAGAAGGAGAGAAAGAGAGATTTTTGTCCAT-GGAAGGACATAAA 1913
Query 1917 -GCAAATACAGTCATTGAAAAGACAAAGAGAAGCTCACACCATAATTTAATTTTTCTTGA 1975
|||||||||||||| |||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 1914 AGCAAATACAGTCATGGAAA-GACAAAGAGAAGCTCAAACCATAATTTGATTTTTCTTGA 1972
Query 1976 TTTCTGTTTGTTTTTGTATTTGGAAAAATATGCAGGAAGATATACGTTGGTTATTTTTT 2034
|| |||||| | ||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct 1973 TT-CTGTTT-T----GTATTTGGAAAAATATGCAAGAAGAAATACATTGGTTATTTTTT 2025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100802694360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5