BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493978 Length=1305 Score E Sequences producing significant alignments: (Bits) Value AT5G40090.1 | Symbols: | Disease resistance protein (TIR-NBS c... 1640 0.0 > AT5G40090.1 | Symbols: | Disease resistance protein (TIR-NBS class) | chr5:16041919-16043494 REVERSE LENGTH=1576 Length=1576 Score = 1640 bits (888), Expect = 0.0 Identities = 1018/1080 (94%), Gaps = 11/1080 (1%) Strand=Plus/Plus Query 230 AAAAAGGTTCACTCATGGTCATACCCATTTTTCTTAAAGA-TTACTCTTTTAATGTGGAA 288 |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| Sbjct 293 AAAAAGGTTCACTCATGGTCATACCCATTTTTCTTACAGATTTA-TCTTTTAATGTGGAA 351 Query 289 GAAATCTACCGACAATATCCGGAGAAGGCACCAAGTTGGAGAATTGCACTTACCAAATTG 348 ||||| | | ||||| ||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 352 GAAATATGCAGACAACATCCGGAGAAGGCGCCAAGTTGGAGAACTGCACTTACCAAATTG 411 Query 349 ACCAACTTTGCTGCTGAGTATCCATTTTCTCAAAATCTTGCAGGAATGGATCAGTCAGAT 408 |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 412 ACCAACCTTGCCGCTGAGTATCCATTATCTCAAAATCTTGCAGGAATGGATCAGTCAGAT 471 Query 409 CGGCTCAACCAAATTGTTCATGACATATCTCTTGTCGTGTTCTACTCCGCATCAAACGAT 468 | ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct 472 CTACTCAACCAAATTGCTCGTGACATATCTCTTGTCGTGTTCTACTCCGGATCAAACGAT 531 Query 469 TCGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTAGTTTATGACTTGTTGGCTTTA 528 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 532 TCGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTGGTTTATGACTTGTTGGCTTTA 591 Query 529 GAAGTTAACAAAGAGGTTCGTACCATTGGCATTTGGGGTAGTGCTGGTGTTGGGAAGACA 588 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 592 GAAGTTAACAAAGAGGTTCGTACAATTGGCATTTGGGGTAGTGCTGGTGTTGGGAAGACA 651 Query 589 ACACTTGCAAGGTACATTTATTCAGAGATCTTTGTTAACTTTCGGACAAATGTTTTCCTA 648 ||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||| Sbjct 652 ACACTTGCAAGGTACATTTATGCAGAGATCTTTGTAAACTTTCAGACACATGTTTTCCTA 711 Query 649 GATAATGTTGAAAATATGAAAGACAAGCTTCTAAAGTTTGAAGGGGAAGAAGATCCAACG 708 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 712 GATAATGTTGAAAACATGAAAGACAAGCTTCTAAAGTTTGAAGGAGAAGAAGATCCAACG 771 Query 709 GTAATAATAAGCTCATAT---GATGGGCATGAAATTACCGAAGCAAGGCGTAAACACCGG 765 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 772 GTAATAATAAGCTCATATCACGATGGACATGAAATTACCGAAGCAAGGCGTAAACACCGG 831 Query 766 AAAGTTCTCCTTATCGCTGATGATGTGAACAACATCAAACAAGGGAAGTGGATCATTGAA 825 ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 832 AAAATTCTCCTTATCGCTGATGATGTGAACAACATGGAACAAGGGAAGTGGATCATTGAA 891 Query 826 TATGCTAACTGGTTTGCTCCAGGAAGCAGAGTCATTCTTATTAGCCAGAACAAGCATTTG 885 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 892 TATGCTAACTGGTTTGCTCCAGGAAGCAGAGTCATTCTTATTAGCCAGAACAAGAATTTG 951 Query 886 CTTGTTGACGCCGGAGTGA-GCCATGTGTATGAAGTCAGATCTTTAAGATATGATGAAGC 944 ||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| Sbjct 952 CTTGTTGACGCCGGAGTGATG-GATGTGTACGAAGTCAGATCTTTAAGATATGATGAAGC 1010 Query 945 TCTTCAAGTCTTCTCTCATTTTGCTTTCAAGCAGCCTTATCCACCTTCTGATTTCGAACA 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1011 TCTTCAAGTCTTCTCTCATTTTGCTTTCAAGCAGCCTTATCCACCTTCTGATTTCGAAGA 1070 Query 1005 GCTTGCAGTTCGTGCTGTCCATCTCGCAGGCTTTCTTCCTTTGGGCCTTAGACTGTTAGG 1064 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1071 GCTCGCAGTTCGTGCTGTCCATCTCGCAGGCTTTCTTCCTTTGGGCCTTAGACTGTTAGG 1130 Query 1065 ATCGTTTTTATCTGGTAAAGGTCGAGAGGAGTGGGTAGCTGCACTGCTCAAACTCAAGGC 1124 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 GTCGTTTTTAGCTGGTAAAGGTCGAGAGGAGTGGGTAGCTGCACTGCTCAAACTCAAGGC 1190 Query 1125 AAAGCAAGGTGGAAATATAATGGAAGTGTGGAAACTTATGGA-GCCATCAGACGATAAAG 1183 ||||||||||||| |||||||||||||||||||||||||||| || | |||||||||||| Sbjct 1191 AAAGCAAGGTGGACATATAATGGAAGTGTGGAAACTTATGGAAGCAA-CAGACGATAAAG 1249 Query 1184 GCCAAGAGGAGTGGGAAACTGCAGCAGACATAGTGGAAGGGAAGGAATTATCACAAGACA 1243 ||| ||||||||||||||||||||| || ||||||||| ||||||||| ||||||||| | Sbjct 1250 GCCTAGAGGAGTGGGAAACTGCAGCCGATATAGTGGAAAGGAAGGAATCATCACAAGATA 1309 Query 1244 AAGGTCAAGAGGAGAGGGAAGTTGCTGCAGGCATAACGGA-AGGGAAGGAATCATCACAA 1302 || ||||| | ||||| ||||||||||||| ||| | | ||| ||||||||||||||| Sbjct 1310 AAAGTCAACAAGAGAGTGAAGTTGCTGCAGACATTTTG-ATAGGAAAGGAATCATCACAA 1368 Score = 148 bits (80), Expect = 1e-34 Identities = 100/109 (92%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 4 TCTTCTTCTCCATCTTCTTCTGCTTCTTTGTTGCTAATTGGAACGGAGGTGGATGTCTTC 63 ||| ||||| |||||||| ||||||||||||||| |||||| |||||||||||||||| Sbjct 7 TCTGCTTCTTCATCTTCTGCTGCTTCTTTGTTGC---TTGGAAGGGAGGTGGATGTCTTC 63 Query 64 CTGAGTTTCTGCTGCGAGACTAGCCATGGATATTTTCATAATATTTTGA 112 ||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 64 CTGAGTTTCTGCTGCCAGACTAGCCATGGATATTTTCAAAATATTTTGA 112 Score = 137 bits (74), Expect = 2e-31 Identities = 104/117 (89%), Gaps = 8/117 (7%) Strand=Plus/Plus Query 113 ATGCTTGGAGACGAGATTCGGACCAATTGCTCAACGGACTTACGGACACTCAAGGCTTTG 172 ||||||||||| ||||||||||||||||| | | | ||||||||||||||||||| Sbjct 147 ATGCTTGGAGAAGAGATTCGGACCAATTGGT---C--A---ACGGACACTCAAGGCTTTG 198 Query 173 GAAGAGTCGAGAGTCGCGATTGTTATGACCTCTGCGACGAAACCTTGTTCCGTTGGC 229 |||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| Sbjct 199 GAAGAGTCGAGAGTCGCGGTTGTTATGACCTCTACGACGAAACCTTGCTCCGTTGGC 255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64206497055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5