BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493978
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40090.1 | Symbols: | Disease resistance protein (TIR-NBS c... 1640 0.0
> AT5G40090.1 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr5:16041919-16043494 REVERSE LENGTH=1576
Length=1576
Score = 1640 bits (888), Expect = 0.0
Identities = 1018/1080 (94%), Gaps = 11/1080 (1%)
Strand=Plus/Plus
Query 230 AAAAAGGTTCACTCATGGTCATACCCATTTTTCTTAAAGA-TTACTCTTTTAATGTGGAA 288
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 293 AAAAAGGTTCACTCATGGTCATACCCATTTTTCTTACAGATTTA-TCTTTTAATGTGGAA 351
Query 289 GAAATCTACCGACAATATCCGGAGAAGGCACCAAGTTGGAGAATTGCACTTACCAAATTG 348
||||| | | ||||| ||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 352 GAAATATGCAGACAACATCCGGAGAAGGCGCCAAGTTGGAGAACTGCACTTACCAAATTG 411
Query 349 ACCAACTTTGCTGCTGAGTATCCATTTTCTCAAAATCTTGCAGGAATGGATCAGTCAGAT 408
|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 412 ACCAACCTTGCCGCTGAGTATCCATTATCTCAAAATCTTGCAGGAATGGATCAGTCAGAT 471
Query 409 CGGCTCAACCAAATTGTTCATGACATATCTCTTGTCGTGTTCTACTCCGCATCAAACGAT 468
| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 472 CTACTCAACCAAATTGCTCGTGACATATCTCTTGTCGTGTTCTACTCCGGATCAAACGAT 531
Query 469 TCGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTAGTTTATGACTTGTTGGCTTTA 528
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 532 TCGAATGCCCTTGTTGCAATGGATCGTCACATGAAAGTGGTTTATGACTTGTTGGCTTTA 591
Query 529 GAAGTTAACAAAGAGGTTCGTACCATTGGCATTTGGGGTAGTGCTGGTGTTGGGAAGACA 588
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 592 GAAGTTAACAAAGAGGTTCGTACAATTGGCATTTGGGGTAGTGCTGGTGTTGGGAAGACA 651
Query 589 ACACTTGCAAGGTACATTTATTCAGAGATCTTTGTTAACTTTCGGACAAATGTTTTCCTA 648
||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||
Sbjct 652 ACACTTGCAAGGTACATTTATGCAGAGATCTTTGTAAACTTTCAGACACATGTTTTCCTA 711
Query 649 GATAATGTTGAAAATATGAAAGACAAGCTTCTAAAGTTTGAAGGGGAAGAAGATCCAACG 708
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 712 GATAATGTTGAAAACATGAAAGACAAGCTTCTAAAGTTTGAAGGAGAAGAAGATCCAACG 771
Query 709 GTAATAATAAGCTCATAT---GATGGGCATGAAATTACCGAAGCAAGGCGTAAACACCGG 765
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 772 GTAATAATAAGCTCATATCACGATGGACATGAAATTACCGAAGCAAGGCGTAAACACCGG 831
Query 766 AAAGTTCTCCTTATCGCTGATGATGTGAACAACATCAAACAAGGGAAGTGGATCATTGAA 825
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 832 AAAATTCTCCTTATCGCTGATGATGTGAACAACATGGAACAAGGGAAGTGGATCATTGAA 891
Query 826 TATGCTAACTGGTTTGCTCCAGGAAGCAGAGTCATTCTTATTAGCCAGAACAAGCATTTG 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 892 TATGCTAACTGGTTTGCTCCAGGAAGCAGAGTCATTCTTATTAGCCAGAACAAGAATTTG 951
Query 886 CTTGTTGACGCCGGAGTGA-GCCATGTGTATGAAGTCAGATCTTTAAGATATGATGAAGC 944
||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 952 CTTGTTGACGCCGGAGTGATG-GATGTGTACGAAGTCAGATCTTTAAGATATGATGAAGC 1010
Query 945 TCTTCAAGTCTTCTCTCATTTTGCTTTCAAGCAGCCTTATCCACCTTCTGATTTCGAACA 1004
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1011 TCTTCAAGTCTTCTCTCATTTTGCTTTCAAGCAGCCTTATCCACCTTCTGATTTCGAAGA 1070
Query 1005 GCTTGCAGTTCGTGCTGTCCATCTCGCAGGCTTTCTTCCTTTGGGCCTTAGACTGTTAGG 1064
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GCTCGCAGTTCGTGCTGTCCATCTCGCAGGCTTTCTTCCTTTGGGCCTTAGACTGTTAGG 1130
Query 1065 ATCGTTTTTATCTGGTAAAGGTCGAGAGGAGTGGGTAGCTGCACTGCTCAAACTCAAGGC 1124
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GTCGTTTTTAGCTGGTAAAGGTCGAGAGGAGTGGGTAGCTGCACTGCTCAAACTCAAGGC 1190
Query 1125 AAAGCAAGGTGGAAATATAATGGAAGTGTGGAAACTTATGGA-GCCATCAGACGATAAAG 1183
||||||||||||| |||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1191 AAAGCAAGGTGGACATATAATGGAAGTGTGGAAACTTATGGAAGCAA-CAGACGATAAAG 1249
Query 1184 GCCAAGAGGAGTGGGAAACTGCAGCAGACATAGTGGAAGGGAAGGAATTATCACAAGACA 1243
||| ||||||||||||||||||||| || ||||||||| ||||||||| ||||||||| |
Sbjct 1250 GCCTAGAGGAGTGGGAAACTGCAGCCGATATAGTGGAAAGGAAGGAATCATCACAAGATA 1309
Query 1244 AAGGTCAAGAGGAGAGGGAAGTTGCTGCAGGCATAACGGA-AGGGAAGGAATCATCACAA 1302
|| ||||| | ||||| ||||||||||||| ||| | | ||| |||||||||||||||
Sbjct 1310 AAAGTCAACAAGAGAGTGAAGTTGCTGCAGACATTTTG-ATAGGAAAGGAATCATCACAA 1368
Score = 148 bits (80), Expect = 1e-34
Identities = 100/109 (92%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 4 TCTTCTTCTCCATCTTCTTCTGCTTCTTTGTTGCTAATTGGAACGGAGGTGGATGTCTTC 63
||| ||||| |||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct 7 TCTGCTTCTTCATCTTCTGCTGCTTCTTTGTTGC---TTGGAAGGGAGGTGGATGTCTTC 63
Query 64 CTGAGTTTCTGCTGCGAGACTAGCCATGGATATTTTCATAATATTTTGA 112
||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 64 CTGAGTTTCTGCTGCCAGACTAGCCATGGATATTTTCAAAATATTTTGA 112
Score = 137 bits (74), Expect = 2e-31
Identities = 104/117 (89%), Gaps = 8/117 (7%)
Strand=Plus/Plus
Query 113 ATGCTTGGAGACGAGATTCGGACCAATTGCTCAACGGACTTACGGACACTCAAGGCTTTG 172
||||||||||| ||||||||||||||||| | | | |||||||||||||||||||
Sbjct 147 ATGCTTGGAGAAGAGATTCGGACCAATTGGT---C--A---ACGGACACTCAAGGCTTTG 198
Query 173 GAAGAGTCGAGAGTCGCGATTGTTATGACCTCTGCGACGAAACCTTGTTCCGTTGGC 229
|||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct 199 GAAGAGTCGAGAGTCGCGGTTGTTATGACCTCTACGACGAAACCTTGCTCCGTTGGC 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5