BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493981
Length=550
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40040.1 | Symbols: | 60S acidic ribosomal protein family |... 809 0.0
> AT5G40040.1 | Symbols: | 60S acidic ribosomal protein family
| chr5:16029752-16030313 REVERSE LENGTH=562
Length=562
Score = 809 bits (438), Expect = 0.0
Identities = 516/553 (93%), Gaps = 7/553 (1%)
Strand=Plus/Plus
Query 1 CTAATCGCAGTCGATTTGCTTCTTTCAtttttttCAGTAAACAAAAagagagagagagCG 60
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||
Sbjct 1 CTAATCGCAGTCGATTTGCTTCTTTCATTTTTTTCAG-AAA-AAAAAGAGAGAGA-A-CG 56
Query 61 ATGAAGGTTGTTGCGGCGTACCTCCTTGCCAAACTCGGCGGCAAAGAGAATCCATCCGTC 120
||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct 57 ATGAAGGTTGTTGCGGCGTACCTCCTTGCTAAACTCAGTGGCAATGAGAATCCATCCGTC 116
Query 121 GCTGATCTGAAGAAGGTCTTCGAATCTGTTGGTGCAGAGATTGACCAAGAGAAGATAGAT 180
||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 117 GCTGATCTGAAGAAGATCGTCGAATCTGTTGGTGCAGAGATCGACCAAGAGAAGATAGAT 176
Query 181 CTGTTCTTCTCTCTGATCAAAGATCACGATGTGACTGAGCTTATCGCTATTGGACGTGAG 240
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct 177 CTGTTCTTCTCTCTGATCAAAGATCGCGATGTGACTGAGCTTATCGCTGTTGGACGAGAG 236
Query 241 AAGATGGCGGCTCTTTCTTCCGGTGGTCCTGCGGTTGCGGTTGCTTCTGGTGGAGGCGGT 300
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 237 AAGATGGCGGCTCTATCTTCCGGTGGTGGTGCGGTTGCGGTTGCTTCTGGTGGAGGAGGT 296
Query 301 GGTGCTGCTCCAGCCACTGAGCCTGCGGCGGCTGAGGCAAAGAAGAAGGAAGAGGAGAAA 360
||||||||||||||| |||||||||| ||| |||| | |||||||||||||||||||||
Sbjct 297 GGTGCTGCTCCAGCCGCTGAGCCTGCCTCGGTTGAGTCCAAGAAGAAGGAAGAGGAGAAA 356
Query 361 GAGGAATCAGAAGATGACGGTGGAATGATGAGTCTCTTTGATTGATCATGTGATGATGGT 420
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 357 GAGGAATCAGAAGATGACGGTGGAATGATGAGTCTCTTCGATTGATCTTGTGATGATGGT 416
Query 421 AGAATCTTTCGATCTGCGT-ATTATCTTATCGTGTTTTATGTCTTTTT-CTTAATTAGGG 478
|| | ||| ||||||| | |||||||||||||||||||||| ||||| |||||||||||
Sbjct 417 TGATTGTTTTGATCTGCATTATTATCTTATCGTGTTTTATGTTTTTTTTCTTAATTAGGG 476
Query 479 TTTCTGGATTTT-GTTGTTTCCATGGATTATTATCGTCTTTGGTAACTTGAGTTTGGTGC 537
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 477 TTTCTGGATTTTTGTGGTTTCCATGGATTATTATTGTCTTTGGTAACTTGAGTTTGGTGC 536
Query 538 GAATAAATGATTT 550
|||||||||||||
Sbjct 537 GAATAAATGATTT 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26372927175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5