BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493983
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40020.1 | Symbols: | Pathogenesis-related thaumatin superf... 1269 0.0
> AT5G40020.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr5:16022753-16024316 REVERSE LENGTH=936
Length=936
Score = 1269 bits (687), Expect = 0.0
Identities = 772/814 (95%), Gaps = 1/814 (0%)
Strand=Plus/Plus
Query 1 GTCAAGTTACAACCAAATTCCAATGAAATTCCACTCTACCTCCCTGTTACAACTTTTCAT 60
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 GTCAAGTTACAACCAAATTCCAATGAAATTCCAGTCTACCTCCTTGTTACAACTTTTCAT 60
Query 61 AATATCGAGTTGTATAGTATATGGCAAAGTTACAAGTCATGAGGTAACATTTTATGTGCA 120
|||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 61 AATATCGAGTTGTATAGTATATGGCAAAGTAACAAGCCATGAGGTAACGTTTTACGTGCA 120
Query 121 AAATAAATGTTCATTTCCGATTTGGCCGGCCGTTGCCCCCAACTCCGGCCATCCGGTGCT 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AAATAAATGTTCATTTCCGATTTGGCCGGCCGTTGCCCCAAACTCCGGCCATCCGGTGCT 180
Query 181 AGCCTCTGGTGGATTTTACCTGCCATGTGGAGGTATTAAACGCATTGATGCTCCTTGGGG 240
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 181 AGCCTCTGGTGGATTTTATCTGCCATGCGGAGGTATTAAACGCATTGATGCTCCTTTGGG 240
Query 241 TTGGAGTGGTCGCATTTGGGCTAGAACAGGCTGTGACTTCACTTCAAACTGGAAACAAGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TTGGAGTGGTCGCATTTGGGCTAGAACAGGCTGTGACTTCACTTCAAACTCGAAACAAGC 300
Query 301 TTGTGAAACAGGTGATTGTGATGGACATTTGGAGTGTAATGGATTGATCGGAAAACCTCC 360
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 301 TTGTGAAACAGGTGATTGTGATGGACATCTGGAGTGTAATGGATTAATCGGAAAACCTCC 360
Query 361 AGCAACCCTTATTCAAATTGCTGTAGAAGCCGACAAATCCAAACCTAATTTCTATGATGT 420
||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 361 GGCAACACTTATTCAAATTGCGGTACAAGCCGACAAATCCAAACCTAATTTCTACGATGT 420
Query 421 AAGCCTCGTGGACGGTTACAATCTCCCCGTCGCAGTGAACTCGAAACCCGTATCATCCAA 480
|||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 421 AAGCCTCGTGGACGGTTATAATCTTCCCGTCGTAGTGAACTCGAAACCCGTATCATCCAA 480
Query 481 ATGCAACATCTTAGGATGCCATAAAGATCTCAAAACCACATGTCCTGAAGAACTACAGGT 540
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGCACCATCTTAGGGTGCCATAAAGATCTCAAAACCACATGTCCTGAAGAACTACAGGT 540
Query 541 CTTGAACGAAGAGGGACAAATCGTGGCTTGCAAGAGTGCATGCTTAGCATTTGATAACGA 600
|||||||||||||||| | | ||||| |||||||||||||| ||||| |||||||||||
Sbjct 541 TTTGAACGAAGAGGGACGAGTTGTGGCGTGCAAGAGTGCATGTTTAGCGTTTGATAACGA 600
Query 601 CAGGTTTTGTTGCCGGAATGCGTATGGAACGCCGGAGAAGTGCAAAAGAAACACGTACTC 660
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 601 CAGATTTTGTTGCCGGAATGCATATGGAACGCCGGAAAAGTGCAAAAGAAACACGTACTC 660
Query 661 TATGTTGTTTAAAGAAGCTTGTCCCAATTATTACAGTTATGCGTACGACACACCTCCTCC 720
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 661 TATGTTGTTTAAAGAAGCTTGTCCCAACTATTACAGTTATGCCTACGAGACACCTCCTCC 720
Query 721 TTTGGTCACTTGCTCCGCCAAGGAATATCTTATCACATTTTGTCCATCAAATTGGGGTCA 780
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 721 TTTGGTCACTTGCTCCGCCAAGGAATATCTTATCACGTTTTGTCCATCAAACTGGGGCCA 780
Query 781 TAGTTCCACGTAAAAAACTTTCAAAAATACGATA 814
|||||||||||||||| ||| ||||||||||||
Sbjct 781 TAGTTCCACGTAAAAATTTTT-AAAAATACGATA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41192000540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5