BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493988
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39990.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2573 0.0
> AT5G39990.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:16004281-16006740
FORWARD LENGTH=1869
Length=1869
Score = 2573 bits (1393), Expect = 0.0
Identities = 1578/1663 (95%), Gaps = 30/1663 (2%)
Strand=Plus/Plus
Query 2 TCCTTCTTCAATCTCT-T-CTCTTTTACTAACGTTATTTCTTCAATCTCATTGATC--AA 57
|||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||
Sbjct 22 TCCTTCTTCAATCTCTCTATTCTCTTACTAACGTTATTTCTTCAATCTCATTGATCAAAA 81
Query 58 GAAACAAAAACCCTAATC-GCAAAAATCTCAAATTTCTTCCAAAAGTTTCAGTTTTTAAA 116
|||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 82 AAAACCAAAACCCTAATCTGCAAAAATCTC-AATTTCCTCCAAAAGTTTCAGTTTTTAAA 140
Query 117 AATGTGTTTTCTTCTTTTGTAACGTAAAAATGTGTCAAACTTTGAATTGACCA--ttttt 174
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 141 AATGGGTTTTCTTCTTTTGTAACGAAAAAATGTGTCAAACTTTGAATTGACCATTTTTTT 200
Query 175 tt-tGA-GATTCGATGAAGAAATTGAGAAGCTATTACTCAAATGTGAGAcatcatcagaa 232
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TTATAAGGATTCGATGAAGAAATTGAGAAGCTATTACTCAAATGTGAGACATCATCAGAA 260
Query 233 t---catcatcatcatcatcatcatAACAATGTTGTTTCTTCAGAGAGGAAATGGATTA- 288
| ||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 261 TCACCATCATCATCACCATCATCATAGCAACATTGTTTCTTCAGAGAGGAAATGGA-TAT 319
Query 289 TATTCCCTCTTTTGATTGGTTCAATCTTCGCTTTGTTCTTACTCTTCCTCACAACAACCC 348
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TTTTCCCTCTATTGATTGGTTCAATCTTCGCTTTGTTCTTACTCTTCCTCACAACAACCC 379
Query 349 TAACTTCACCAACC---GGAGTCCGATTTCTCCCTTTTACCCGACCCGTTTTGTTAACCG 405
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TAACTTCACCAACCGGAGGAGTCCGATTTCTCCCTTTTACCCGACCCGTTTTGTTAACCG 439
Query 406 GATCTGGTTCTTCAGCTTTCGTTGAATCCAAGATCAAACCTCAACCAATCTCATCACTCC 465
|||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 440 GATCTGGTTCATCAGCTTTCGTTGAATCCAAAATCAAACCTCAACAAATCTCATCACTCC 499
Query 466 CATCGCCACCGCGTTTTGCTTACTTGATTTCTGGATCCGCCGGTGACGGGAAATCTCTCC 525
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 500 CGTCGCCACCGCGTTTTGCTTACTTGATTTCTGGATCCGCCGGCGACGGGAAATCTCTCC 559
Query 526 GGCGAACTCTTTTGGCTCTTTACCATCCGAATAATCGGTATGTTGTTCATTTAGATAGAG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GGCGAACTCTTTTGGCTCTTTACCATCCGAATAATCGGTATGTTGTTCATTTAGATAGAG 619
Query 586 AATCTTCCAAG-GAAGAGAGAGAGGAGCTTCATGGATATATCAAAAACTCGTCTTTGTTT 644
|||||| | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AATCTT-CGCGTGAGGAGAGAGAGGAGCTTCATGGATATATCAAAAACTCGTCTTTGTTT 678
Query 645 CGAAGGTTTATGAATGTTCATATGATTGAGAAAGCTAATCTTGTTACGTATCGTGGACCT 704
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 679 CGAAGGTTTATGAATGTTCATATGATTGAGAAAGCTAATCTTGTCACGTATCGTGGACCT 738
Query 705 ACCATGGTTGCGAATACACTTCACGCCGCGGCGATTTTGCTTAGAGAAGGAGCTGATTGG 764
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 739 ACTATGGTTGCCAATACACTTCACGCCGCTGCGATTTTGCTTAGAGAAGGAGCTGATTGG 798
Query 765 GATTGGTTTATTAATCTTAGCTCTTCTGATTATCCTCTAGTGACTCAAGATGATTTGTTG 824
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 799 GATTGGTTTATCAATCTTAGCTCTTCTGACTATCCTTTAGTGACTCAAGATGATTTGTTG 858
Query 825 CATATCTTTTCGCATTTGCCGCGGGATTTGAACTTCATTGATCATACTAGTAACATTGGA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CATATCTTTTCGCATTTGCCGCGGGATTTGAACTTCATTGATCATACTAGTAACATTGGA 918
Query 885 TGGAAAGCATCACAAAGAGCAAAACCGGTAATTATAGATCCTGGACTGTATTTGAACAAG 944
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 919 TGGAAAGCATCACAAAGAGCAAAACCGGTGATTATAGATCCTGGACTGTATTTGAACAAG 978
Query 945 AAATCTGATGTTTTTTGGGTTACGCAAAGACGAAGCATCCCAACAGCATTCAAGCTTTTC 1004
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 979 AAATCTGATGTTTTTTGGGTTACGCAAAGACGGAGCATCCCAACAGCATTCAAGCTTTTC 1038
Query 1005 ACAGGCTCTGCTTGGATGGCGTTATCTCGGCCATTCATCGACTACTGTATTTGGGGTTGG 1064
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 1039 ACAGGCTCTGCTTGGATGGCGTTATCTCGGCCATTCGTCGACTATTGTATATGGGGTTGG 1098
Query 1065 GATAATCTACCTCGTACCGTCTTAATGTATTACTCGAATTTTCTCTCTTCCCCAGAAGGA 1124
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1099 GATAATCTACCTCGTACGGTCTTAATGTATTACTCGAATTTTCTCTCTTCTCCAGAAGGA 1158
Query 1125 TATTTTCACACTGTTCTCTGCAACGCTGAGGAATTCAGAAACACAACAGTAAATAGCGAC 1184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1159 TATTTTCACACTGTTCTCTGCAACGCTGAGGAATTCAGAAACACAACGGTAAATAGCGAC 1218
Query 1185 CTGCACTTCATATCATGGGACAATCCGCCTAAGCAGCATCCACACCATCTCACTCTTGCA 1244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1219 CTGCACTTCATATCGTGGGACAATCCGCCTAAGCAGCATCCACACCATCTCACTCTTACA 1278
Query 1245 GACATGACTAAAATGGTAGACAGCAATGCCCCGTTTGCAAGAAAATTCAGAAGAGAAGAT 1304
|||||||| ||||||||| | ||||||||||||||||| ||||| |||||||||||||||
Sbjct 1279 GACATGACCAAAATGGTAAATAGCAATGCCCCGTTTGCTAGAAAGTTCAGAAGAGAAGAT 1338
Query 1305 CCTGTCCTTGACAAGATCGATGATGAGCTCCTTAACAGAGGTCCTGGGATGGCTA-CACC 1363
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1339 CCTGTCCTTGACAAGATCGATGATGAGCTCCTTAACAGAGGTCCTGGGATGA-TAACACC 1397
Query 1364 TGGCGGTTGGTGCATTGGAAGCTATGAGAATGAGAGTGATCCTTGTGCTGTTATTGGTGA 1423
|||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 1398 TGGCGGTTGGTGCATTGGAAGCCATGAGAATGGGAGTGACCCTTGTGCTGTTATTGGTGA 1457
Query 1424 TACTGATGTTATCAGGCCTGGTCCAGGCGCTAGACGGCTCGAGAATCTGGTAACTTCGTT 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TACTGATGTTATCAGGCCTGGTCCAGGCGCTAGACGGCTCGAGAATCTGGTAACTTCGTT 1517
Query 1484 ATTATCAACTGAGAATTTCCGATCAAAACAGTGCAAGTGATCTGA-ATATCTAGAGAACG 1542
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1518 ATTATCCACTGAGAATTTCCGATCAAAACAGTGTAAGTGATCTGATATATCTAGAGAACG 1577
Query 1543 ACATCA-A-AGAGATTGAATGTAGCAGCCTTGATTATTGGGATTAGATGTGATTTAGGAT 1600
|||||| | |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1578 ACATCACATAGAGATGGAATGTAGCAGCCTTGATTATTGGGGTTAGATGTGATTTAGGAT 1637
Query 1601 CTTATAGCA-TCCCTCTTTTACTTAGTCAAGATTATAAGTGAA 1642
|| |||| | ||||||||||| ||||||| ||||||||||
Sbjct 1638 CTGATAGAAATCCCTCTTTTA----GTCAAGAATATAAGTGAA 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81124080720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5