BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493989
Length=2090
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39970.1 | Symbols: | catalytics | chr5:15998025-16000813 F... 3186 0.0
> AT5G39970.1 | Symbols: | catalytics | chr5:15998025-16000813
FORWARD LENGTH=2265
Length=2265
Score = 3186 bits (1725), Expect = 0.0
Identities = 1967/2084 (94%), Gaps = 16/2084 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCTCTCTGTTTTATAGAAATGTTTCTTTCTTTCCTTCTGTTGTTTCTTGCCAAA 60
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 131 ATGGGTTCTCTCTGTTCTATAGCCATGTTTCTTTCTTTTCTTCTGTTGTTTCTTGCCAAA 190
Query 61 AACTCCTTTTCACATCCTTTATGTAATGATTTGACTGCACCGTTTCATCTGAAGCAACCG 120
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 191 AAATCCTTGTCACATCCTTTATGTAATGATTTGACTGCACCGTTTAATCTGAAGCAACCG 250
Query 121 CTCGCTTTTTGTCAATTCAATGGAAGTGTATGCTGTAACTCCC-GAGACGACTTGAAGTT 179
|| | |||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 251 CTAGGTTTTTGTCAATTCAATGGAAGTGTATGCTGTAACTCCCTG-GAAGACTTGAAGTT 309
Query 180 GCAGAGAGAGTTTAAAGCGGTT-AACGTATCTGGCAGATGTTCTCCGCTTCTTAAATCAT 238
||||||| |||||||||| || || |||||||||||||||||||| ||||| |||||||
Sbjct 310 GCAGAGACAGTTTAAAGC-ATTCAATGTATCTGGCAGATGTTCTCCACTTCTCAAATCAT 368
Query 239 TACTTTGCTCAAAGTGTGATCCTTTCGCAGCAGAACTTTTCCGTGTTGAATCAGAATCTA 298
|||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 369 TACTTTGCTCGAAGTGTGATCCTTTCGCAGCAGAGCTTTTCCGCGTTGAGTCAGAATCTA 428
Query 299 GACAAGTTCCTGTGCTCTGCAACTCTACAGTTTCTTCTAGTAAATCAACACAATCGCTGG 358
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 429 GACAAGTTCCTGTGCTCTGCAACTCCACAGTTTCTTCTAGTAAATCAACACAATCGCTAG 488
Query 359 CAGACATTGATTTTTGTGCCACATTTTGGAATGAATGCCAGAATCTCTCTGTAACCAACA 418
| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 489 CCGACATTGATTTCTGTGCCACATTTTGGAATGAATGCCAGAGTCTCTCTGTAACCAACA 548
Query 419 CTCCTTTTGCTTCTCAAGCTGGAGATGGAGGCAACATCACTTCCACAATATCTGAAATAT 478
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CTCCGTTTGCATCTCAAGCTGGAGATGGAGGCAACATCACTTCCACAATATCTGAAATAT 608
Query 479 GGAAATCAAGCAATGACTTCTGCAAAATTTTTGGTGGAGCTTCAGATGAATCCTCTGTGT 538
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 609 GGAAATCAAGTAATGACTTCTGCAAGATTTTTGGTGGAGCTTCAGATGAATCCTCTGTGT 668
Query 539 GCTTTAACGGCCAAGCAGTTTCATTTAACATTTCAAAAGTTACTGGT-C--CATCTCCTT 595
|||| || || || | ||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 669 GCTTCAATGGTCAGGAAGTTTCATTTAACGTTTCAAAAGTTACTGGTCCATCATCTCCTT 728
Query 596 CAGGCATATGCCTCGAGAAGCTTGGAAATGGGTCTTATCTTAACATGGAACCTCATCCTG 655
||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 729 CAGGCATATGCATCGAGAAGATTGGAAATGGGTCTTATCTTAACATGGTACCTCATCCTG 788
Query 656 ATGGTTCTGATCGCGTCTTTCTGTCTGATCAACCCGGGAAGATATACTTGGCGATAGTTC 715
|||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 789 ATGGTTCTAATCGTGTCTTTCTGTCTGATCAACCCGGGAAGATATACTTGGTGACAGTTC 848
Query 716 CAGCTCAAGGATCTGGAGAAATTTTGAAAATAGACGAAACTAACCTGTTTCTTGATCTTA 775
||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||||||||
Sbjct 849 CAGCTCAAGGATCAGGAGAACTTTTGAAAATAGATGAAACTAACCCGTTTCTTGATCTTA 908
Query 776 CTGAAGAAGTGCACTTTGATGCTGAGCTTGGTCTCTTAGGAATAGCTTTCCATCCCGAAT 835
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 909 CTGAAGAAGTGCACTTTGATGCTGAGCTTGGTCTCCTAGGAATAGCTTTCCATCCTGACT 968
Query 836 TTTTGAAAAACGGTAGATTCTTTGCTTCTTTCAACTGCGATAGAGTTAAGTGGCCAGAAT 895
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 969 TCTTGAAAAACGGAAGATTCTTTGCTTCTTTCAACTGCGATAGAGTTAAGTGGCCCGAAT 1028
Query 896 GTTCTGGAAAATGCGCGTGCAACTCAGATATTGACTGTGACCCTGCAAAGCTAGATTCTG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 GTTCTGGAAAATGCGCGTGCAACTCAGATATTGACTGTGACCCTGCAAAGCTAGATTCTG 1088
Query 956 ATAATGGAGCAACCCCATGTCAATACCACAGTGTCATATCAGAATTCTTTACCAATGGGA 1015
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1089 ATAATGGAGCAACTCCATGTCAATACCATAGTGTCATATCAGAATTCTTTACCAATGGGA 1148
Query 1016 CTTATGTTAGACCGGTGGAGGTAAGAAGAATCTTTACAATGGGTCTTCCTTTTACATCGC 1075
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1149 CGTATGTTAGACCGGTGGAGGTAAGAAGAATCTTTACAATGGGTCTTCCTTTTTCATCGC 1208
Query 1076 ATCATGGTGGACAGATCTTGTTCGGACCAAAAGATGGGTACTTGTATTTCATGATGGGAG 1135
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1209 ATCACGGTGGACAGATCTTGTTCGGACCTAAAGATGGGTACTTGTATTTCATGATGGGAG 1268
Query 1136 ATGGAGGAAGTAAAGGAGATCCACACAACTTTGCACAGAACAAGAAATCATTGCTCGGGA 1195
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1269 ATGGAGGAAGTAAAGGAGACCCATACAACTTTGCACAGAACAAGAAATCATTGCTTGGGA 1328
Query 1196 AGATCATGAGACTTGATGTTAATAATGTTCTTGATGCAAAAATGATGAATGAGTTTCAGC 1255
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1329 AGATCATGAGACTTGATGTTAATAATGTTCTTGATGCAAAAGCGATGAATGAGTTTCAGC 1388
Query 1256 TATGGGGGAACTATTCTATACCAAAGGACAATCCGTTTTCGCAAGATAAGAATCTGTTGC 1315
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1389 TATGGGGAAACTATTCTATACCAAAGGACAATCCGTTTTCTCAAGATAAGAATCTGCTGC 1448
Query 1316 CTGAAATATGGGCCATGGGAGTAAGAAATCCATGGCGATGCAGTTTTGATTCAGAGAGGC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 CTGAAATATGGGCCATGGGAGTAAGAAATCCATGGCGATGCAGTTTTGATTCAGAGAGGC 1508
Query 1376 CGTCTTATTTCTTTTGCGCAGATGTTGGCGAGGACAAATATGAAGAAGTTGATATGATCA 1435
||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
Sbjct 1509 CGTCTTATTTCCTTTGCGCAGATGTTGGAGAGGACCAATATGAAGAAGTTGATATGATTA 1568
Query 1436 CTAAGGGAGGAAACTATGGTTGGCATTACTACGAGGGAACTTTGCCATTTAATCCCTCGA 1495
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1569 CTAAGGGAGGAAACTATGGTTGGCATTACTACGAGGGAACTTTGCCATTTCATCCCTCGA 1628
Query 1496 CTTCTTCTAAAAACAGCAACTCAACAACAAAGATTGCAAATCCGATCTTCCCGGTAATGT 1555
||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1629 GTTCTTCTAATATCAGCAACTCAACAACAAAGATTGAAAATCCGATCTTCCCGGTAATGT 1688
Query 1556 GGTACAATCATTCAGACATAAACCAACAAGAAGGATCA---GCATCAATAACTGGCGGAT 1612
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1689 GGTACAACCATTCAGACATAAACCAACAAGAAGGATCATCAGCATCAATAACTGGCGGAT 1748
Query 1613 ACTTTTACCGTTCCTCCACTGATCCATGC-TTGTATGGAACGTATCTCTTTGCAGACTTA 1671
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1749 ACTTTTACCGTTCCTCCACTGATCCATGCCTT-TATGGAACGTATCTCTTTGCAGACTTG 1807
Query 1672 TACGCTGGAATTATTTGGGGTGGAGCTGAAATTCCAGTTGGTAGTGGAAACTTCACGAGC 1731
||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1808 TACGCTGGAATGATTTTTGGTGGAGCTGAAACTCCAGTTGGTAGTGGAAACTTCACGAGC 1867
Query 1732 TCTCAAATCCCGTTACAATGCGCTTCGGATTCGCCAATCCCTTGCTCATCTGAAACAGAA 1791
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1868 TCTCATATTCCGTTACAATGCGCTTCGGATTCGCCAATCCCTTGCTCATCTGAAACAGAA 1927
Query 1792 CCTTCCTCTTCCTCATCTCCACCAATTGGCTTTGTATTCTCCTTTGGAGAAGACAACAAT 1851
||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1928 CCTTCCTCTTCTTCGTCTCCACCAATTGGCTTTGTATTCTCCTTTGGAGAAGACGACAAT 1987
Query 1852 AAAGACGTCTACTTACTTACAAGCACTGGTGTTTACAGAATCGTTC-CCTCGAGCCGCTG 1910
|||||| | ||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1988 AAAGACATATACTTACTTGCAAGCACTGGTGTTTACAGAATCGTTGGCC-CGAGCCGCTG 2046
Query 1911 TAACTTCCATTGCTCTCTTGAGAACACAACGTTCTTACCTCCTTCACAACAGCCTGATCG 1970
||||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||
Sbjct 2047 TAACTTCCATTGCTCTCTTGAAAACACAACGTCCTCACCTCCTTCAAAACAGCCTGATCG 2106
Query 1971 TTTTCCGCCGTCTTCATCATTGTCTAAACGACTACACAACATTGGTACTCTTGTTGTAAA 2030
|| ||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2107 TTCTCCACCGTCTTCGTCATTTTCTAAAAAACTACACAACATTGGTACTCTTGTTGTAAA 2166
Query 2031 TGT-CTTAGCTTGGTGTTTTCTTTTTGTAGTTATATAGAGAAAA 2073
| | ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 2167 T-TACTTAGCTTGGTGTGTTCTTTTGGTAGTTATATAGAGAAAA 2209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103613924880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5