BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493991
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39950.1 | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thi... 771 0.0
> AT5G39950.1 | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thioredoxin
2 | chr5:15990687-15991931 REVERSE LENGTH=650
Length=650
Score = 771 bits (417), Expect = 0.0
Identities = 577/647 (89%), Gaps = 40/647 (6%)
Strand=Plus/Plus
Query 1 GTCGTTCTTAAACGAAATCagagagagaagagagac--gaga-g--aATGGGAGGAGTTT 55
|||||||||||||| ||||||||||||||| ||||| |||| | ||||||||||| ||
Sbjct 4 GTCGTTCTTAAACGCAATCAGAGAGAGAAGCGAGACGAGAGACGATAATGGGAGGAGCTT 63
Query 56 TATCAACTGTGTTTGGAAGTGGAGAAGA--C-GCAGCTCCAGGGACTGAATCTGAGCCAA 112
|||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||
Sbjct 64 TATCAACTGTGTTTGGAAGTGGAGAAGATGCAACAGCTGCAGGGACCGAATCTGAGCCAA 123
Query 113 GTCGCGTCCTCAAGTTTAGCTCTTCTGCTCGATGGCAACTTCATTTCAACGAGATCAAAG 172
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 124 GTCGCGTCCTAAAGTTTAGCTCTTCCGCTCGGTGGCAACTTCATTTCAACGAGATCAAAG 183
Query 173 AATCTAACAAACTGCTGGTGGTTGATTTCTCGGCTTCATGGTGTGGACCATGTAGGATGA 232
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 184 AATCAAACAAACTGCTGGTGGTTGATTTCTCGGCCTCATGGTGCGGACCATGTAGGATGA 243
Query 233 TTGAGCCTGCGATTCATGCCATGGCTGATAAGTTCTCTGATGTTGATTTCGTCAAATTAG 292
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 244 TTGAGCCTGCGATTCATGCCATGGCTGATAAGTTCAATGATGTTGATTTCGTCAAATTAG 303
Query 293 ATGTTGATGAACTTCCTGATGTGGCTAAAGAGTTTAATGTGACGGCAATGCCAACTTTTG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 304 ATGTTGATGAACTTCCTGATGTGGCTAAAGAGTTTAATGTGACGGCAATGCCTACCTTTG 363
Query 353 TGCTGGTGAAAAGGGGTAAAGAAATTGAAAGGATCATTGGAGCCAAAAAGGATGAACTTG 412
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 364 TGCTGGTGAAAAGGGGTAAAGAAATTGAAAGAATCATTGGTGCCAAAAAGGACGAACTTG 423
Query 413 AGAAGAAAGTTAGCAAACTCAGAGCATA--G----T-G--AAC-----A-----T--T-T 450
|||||||||||||||||||||||||||| | | | ||| | | | |
Sbjct 424 AGAAGAAAGTTAGCAAACTCAGAGCATAATGAGCATTGTTAACGCCTTAACCAATAGTCT 483
Query 451 TGTGTAAACTCGATAATAAATGGTATGTTG-TGGGGAATGTGATGTTCTAT--T-TCTA- 505
||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 484 TGTGTAAACTCAATAATAAATGGTATGTTTATGGGGAATGTGATGTTCTATACTCTCTGC 543
Query 506 TA-T--AAGACCTTTTGTGTGATGCCGTGATTGATTAAAATGGTTTGTTGAAATCCTTAG 562
|| | |||||||| ||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 544 TAATGTAAGACCTTCTGTGTGATGCCATGATTGATTGAAATGGTTTGTTGAAATGCTTAG 603
Query 563 ACTCTGCTTT-AC-GGTTTATGATACAAAGTTGATGCCTTTTGAGCT 607
|||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct 604 ACTCTGCTTTCAGTGGTTTATGATACAAAGTTGACACCTTTTCAGCT 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5