BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493993
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39930.1 | Symbols: CLPS5 | CLP1-similar protein 5 | chr5:15... 1932 0.0
AT5G39920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Pre-mRNA ... 178 1e-43
> AT5G39930.1 | Symbols: CLPS5 | CLP1-similar protein 5 | chr5:15985025-15987339
REVERSE LENGTH=1598
Length=1598
Score = 1932 bits (1046), Expect = 0.0
Identities = 1285/1400 (92%), Gaps = 17/1400 (1%)
Strand=Plus/Plus
Query 1 AACTTTTCGTCTTCCTCTCCAGCATTTGAGCCTCTTTAAATCCAAACTT-AGTTCCATCA 59
|||||||| ||||||||||||| | |||| |||||||||||| ||||| ||| ||||||
Sbjct 2 AACTTTTCATCTTCCTCTCCAGAAATTGA-ACTCTTTAAATCCGAACTTAAGTCCCATCA 60
Query 60 AACTTCTTATCTTTCTTGAGAAATCTGACAAGAAACAAAACATGTTTGGTCCTCAAATAA 119
||||| || || |||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 AACTTTTTGTC-TTCTTGAGAAATCTGA-TAGAGACAAAACATGTTTGGTCCTCAAATAA 118
Query 120 GAAGAGTCG-ATTTAGAGAATCAGAGCGAACTCAGAATCAAAGTGCAACGTACTTCGCCT 178
|| |||| | | || ||||| |||||||||||||||||| || |||||| |||||| |||
Sbjct 119 GACGAGT-GAAGTTGGAGAAACAGAGCGAACTCAGAATCGAATTGCAACCTACTTCACCT 177
Query 179 CTCAGACTCCGTTTGCTCGATGGAAAAGCTGAGATTTTCGGCTATGAACTTCCACATGAA 238
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 178 CTCAGACTCCGTTTGCTCGATGGCAAGGCTGAGATTTTCGGCTATGAACTTCCACATGAA 237
Query 239 GCTTGGATCACATTTCCACCTCTCATGACATTTGCGGTTTTTACATGGTATGGTGCAACT 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTTTGGATCACATTTCCACCTCTCATGACATTTGCGGTTTTTACATGGTATGGTGCAACT 297
Query 299 ATTGAAATCGATGGTACCATC-GAAAATGAATATATATCATGTGAGACACCTATGGCGAA 357
|||||||| ||||||| || | | |||||||||||||||||||||||| ||||||| |||
Sbjct 298 ATTGAAATAGATGGTATCA-CAGGAAATGAATATATATCATGTGAGACGCCTATGGTGAA 356
Query 358 CTATCTTGAAGTGCACAACTCTCTACTAGTACAAAGACATCGTGTTACTTGCTCAACAAG 417
|||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 357 CTATCTTGGACTGCACAACTCTCTACAAGTACAAAGACATCGTGTTACTTCCTCAACAAG 416
Query 418 AGATTCTGTATCTTCACAGG-G--ACCAAGGATTGTCATTGTAGGGGATACAGACTCTGG 474
|||||||| ||||||||||| | ||||||| || ||||||||||||||| |||||||||
Sbjct 417 AGATTCTGCATCTTCACAGGAGGGACCAAGGGTTATCATTGTAGGGGATATAGACTCTGG 476
Query 475 GAAGAGTACATTGGCTAAAATGCTTCTGAATTGGGCAGCAAAAGATGGTTGGAAACCAAC 534
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 477 GAAGAGCACATTGGCTAAAATGCTTCTGAATTGGGCTGTAAAAGATGGTTGGAAACCGAC 536
Query 535 GTTTGTTGATCTTAACATTGGACAAAGCTCGATAACCATACCGGGAACTGTTTCTGCTAC 594
|||||||||||||| | || ||||||||||| |||||||| |||||| | ||||| |
Sbjct 537 ATTTGTTGATCTTAATGTCGGTCAAAGCTCGATTACCATACCAGGAACTATCGCTGCTGC 596
Query 595 TCCTATCAAGATGCCTGTGGATCCTGTTGAAGGGTTTCCTCTTGATAAGGCTCTTGTGCA 654
||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 597 TCCTATCAAAATGCTTGTGGATCCTGTTGAAGGGTTTCCTCTTGATAAGGCTCTTATTCA 656
Query 655 CTACTTTGGTCACGCAAATCCAAATGTAAACCTTAGACTGTACAGAACCCTTGTGGAAGA 714
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 657 CTACTTTGGTCTCACAAATCCAAGTGTAAACCTTAGACTGTACAGAACCCTTGTGGAAGA 716
Query 715 GCTTGCCAGAGAATTAAAAGAAGAGTTTTCTGGTAACTCTGAATCTCGAGCTTCGGGGAT 774
||||||||||||||||||||||||||||| | ||| |||||||| ||||||| |||||
Sbjct 717 ACTTGCCAGAGAATTAAAAGAAGAGTTTTCCGCAAACGCTGAATCTAGAGCTTCTGGGAT 776
Query 775 GGTGTTTGACACGATGGGATTTATCGTTCGTGAAGGCTATACGCTGCTTCTCCATGCAAT 834
|||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 777 GGTGATTGACACTATGGGATTTATCGTTCGTGAAGGCTATGCGCTGCTTCTCCATGCAAT 836
Query 835 AAGGACGTTTAATGCATCTTTAGTTATTGTCCTTGGTCAAGAGGAAAAACTCGTCAATGA 894
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 837 AAGGACGTTTAATGCGTCTTTAGTTATTGTCGTTGGTCAAGAGGAAAAACTCGTCTATGA 896
Query 895 TCTGAAGAAAGATCTCAAATTCAAGAAGAATCTACAATTCTTGAATCTTGAGAAGTCAGC 954
|||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 897 TCTGAAGAAAAATCTAAAATTCAAGAAGAATCTACAAGTCTTGAATCTTGAGAAGTCAGA 956
Query 955 TGGAGTCTTCTCTAGGAGCTCGGACTTCCGCAAAACATTGAGGAACAGTAATATTCAGAA 1014
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 957 AGGAGTCTTCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGAA 1016
Query 1015 TTATTTCTATGGAGTCACGAACGATCTCAAC-GTCTACACCAAAACAGTAAAGTTCACTG 1073
|||||||||||||||||| |||||||||| | |||||||| ||||| || ||||||| ||
Sbjct 1017 TTATTTCTATGGAGTCACCAACGATCTCA-CTGTCTACACAAAAACCGTTAAGTTCAGTG 1075
Query 1074 ATGTGCAAGTATATCAAATCGGTGATTTTCGAGAGAGTAGTTCAACTTCTGCTCATCAAA 1133
||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 1076 ATGTGCAAGTATATCGAATCGGTGATTTTAGAGTGAGTGGTTCAACTTCTGCTCATCAAA 1135
Query 1134 GAGGAAACAACCCTTTGAAGATCATACCTGTGACAATTGACGAACATCTTGTGAACAAAG 1193
||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1136 GAGGAAATGACCCTTTGAAGATCACACTTGTGACAATTGACGAACATCTTGTGAACAAAG 1195
Query 1194 TTCTTGCTATCTCATACACCA-AACAACCTCATCAGATCATCTCAAGCATTGTTGCTGGA 1252
||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1196 TTCTTGCTATCTCATACGCCATAA-AACCTGATCAGATCATCTCAAGCATTGTTGCTGGA 1254
Query 1253 TTTGTGTGTATCAAAAATGTTGATATT-GTTGAAGAGAGAATTACATATATCTCTCCATC 1311
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 1255 TTTGTGTGTATCAAAAATGTTGATATTAGT-GAAGAGAGAATTACATATGTCTCTCCATC 1313
Query 1312 AGCTGCGGAATTGCCTAGCAAGACACTGATCATGGGGACTTTGACTTGGCATGTAACTTG 1371
||||||||||||||||||||| | | ||||| | ||||||||||| ||||||||||||||
Sbjct 1314 AGCTGCGGAATTGCCTAGCAAAATATTGATCCTAGGGACTTTGACATGGCATGTAACTTG 1373
Query 1372 AGAAGCAAGAAACTAAAGAT 1391
||||||||||||||||||||
Sbjct 1374 AGAAGCAAGAAACTAAAGAT 1393
> AT5G39920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Pre-mRNA
cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis
thaliana protein match is: CLP1-similar protein 5 (TAIR:AT5G39930.1);
Has 25 Blast hits to 25 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:15982173-15983136 REVERSE LENGTH=377
Length=377
Score = 178 bits (96), Expect = 1e-43
Identities = 124/137 (91%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 1238 AGCATTGTTGCTGGATTTGTGTGTATCAAAAATGTTGATATTGTTGAAGAGAGAATTACA 1297
||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 243 AGCATTGTTGCTGGAATTGTGTGTATCAAAAATGTTGATATTGGTGAAGAGAGATTTACA 302
Query 1298 TATATCTCTCCATCAGCTGCGGAATTGCCTAGCAAGACACTGAT-C-ATGGGGACTTTGA 1355
||| ||||||||||||||||||||||||||||||| | | | || | | |||| ||||||
Sbjct 303 TATGTCTCTCCATCAGCTGCGGAATTGCCTAGCAAAATATTTATTCTA-GGGG-CTTTGA 360
Query 1356 CTTGGCATGTAACTTGA 1372
| |||||||||||||||
Sbjct 361 CATGGCATGTAACTTGA 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5