BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493997
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39870.1 | Symbols: | Protein of unknown function (DUF1216)... 994 0.0
> AT5G39870.1 | Symbols: | Protein of unknown function (DUF1216)
| chr5:15968622-15970046 REVERSE LENGTH=908
Length=908
Score = 994 bits (538), Expect = 0.0
Identities = 686/757 (91%), Gaps = 12/757 (2%)
Strand=Plus/Plus
Query 1 GTAAAACAAAATTGTCAATCTACGTTTCTCATACAATGCCAAGATTTCAACtttttttCT 60
|||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||
Sbjct 1 GTAAAACAAAATTGTCAATCTATGTTTCTCATACAATGCCTAGATTTCAACATTTTCTCT 60
Query 61 GTTTTACCATCCTTGTTGCAACCATAACCTTCTTCAATGTAGCTTCAGCTCACGTGAAAA 120
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 61 GTTTTACCATCCTTGTTGCAACCATAACCTTTTTCAAGGTAGCTTCAGCTCACGTGAAAA 120
Query 121 TTAAACCTGCTTTACCACAGATTGAAGATCCATCAACCGTAAAAGATGTCGAGTCTTATA 180
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TTAAACCTGCTTTACCGCAGATTGAAGATCCATTGACCGTAAAAGATGTCGAGTCTTATA 180
Query 181 CCATTAAAGTTGTGACAACCTTCCTGGTTGACCTCGAGAAGGAATGCCCCAAAACAGAGA 240
|||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 181 CCATAAAAGTTGTGACAACGTTCCTGGTTGAGCTTGAGAAGGAATGCCCCAAAACAGAGA 240
Query 241 AGTTTAAGGTCTTCTTCGAAAAACTTAAGGCGTATTCCAAGTACGTGTGCCC-GATCTCT 299
| |||||||| || |||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 241 AATTTAAGGTATTTTTCGAAAAACTTAAGGCGTATTCCAAGTACTTGTGCCCAG-TCTCT 299
Query 300 AAAGCAAAAGGCTATGAATCTGACATGAAGGCCAAGGCTGGTAGCCTTTTCGAGGCAATG 359
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 AAAGCAAAAGGCTACAAATCTGACATGAAGGCCAAGGCCGGTAGCCTTTTCGAGGCAATG 359
Query 360 TCAGCTCTCGGT-TCCGTTAAAAACAGATCTAGAGAAGGATCAGTGACTAAGAGTCTACA 418
||||| ||| | ||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct 360 TCAGCCCTCA-TCTCCGTTAAACACAGATCTAAAGAAGGATCAGTGAATAAGAGTCTACA 418
Query 419 ACGGGGAAAAACGGAGGCCATGAATACCGTAAAATTACTGCAATCCATTGGTGAGAAGAT 478
||||| ||||| ||| |||||||||||| |||| |||||||||||| ||||||| |||||
Sbjct 419 ACGGGAAAAAATGGAAGCCATGAATACCATAAATTTACTGCAATCCGTTGGTGAAAAGAT 478
Query 479 TGCGGGTGGGCGAAATAACAAAACAGAGA-TAAACGGAACCGCGAAACTAACTATAGAGC 537
|||||||||| ||| |||||||||||||| ||| ||| ||||||||||||| |||| |
Sbjct 479 TGCGGGTGGGAGAAGTAACAAAACAGAGACTAAT-GGAGTCGCGAAACTAACTGTAGAAC 537
Query 538 AACAAAAAGAAATCAAAGATGGGATATTGAAATGGCTTCAAGTAATTACTCGAATCGCAA 597
|||| |||||||| |||||||| || ||||||||||||||||||||||||||||||| ||
Sbjct 538 AACAGAAAGAAATGAAAGATGGAATCTTGAAATGGCTTCAAGTAATTACTCGAATCGTAA 597
Query 598 AGACAACCGAAGAAATCAACTCAAAATCTTCATTAAAATCTCAAACAATGCAAGAGAGCA 657
|||||| || |||||| || | ||||||||||| |||||||||||| | ||||| ||||
Sbjct 598 AGACAAACGTAGAAATAAATTTAAAATCTTCATCAAAATCTCAAACGACACAAGAAAGCA 657
Query 658 GAGAAGAAAAATCTTCAACACAAA------TCAAAAGAGGAAGTCAAAGAGAAAATGCTC 711
||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct 658 AAGAAGAAAAATCTTCAACACAAACACAAATCAAAAGAAGAAGTGAAAGAGAATATGCTC 717
Query 712 AAATCACAGCGTTACCTAGAGGTAGCCGCGTGACAAA 748
|||||||||||||||| ||||||||||||||||||||
Sbjct 718 AAATCACAGCGTTACCGAGAGGTAGCCGCGTGACAAA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5