BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494005
Length=629
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39850.1 | Symbols: | Ribosomal protein S4 | chr5:15950022-... 1079 0.0
> AT5G39850.1 | Symbols: | Ribosomal protein S4 | chr5:15950022-15951425
FORWARD LENGTH=879
Length=879
Score = 1079 bits (584), Expect = 0.0
Identities = 614/629 (98%), Gaps = 0/629 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAGCAGCTATGGTAAACGTCAGATTCTACCGCAACTATGGGAAAACATTCAAGAA 60
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 19 AGCAGCAGCAGCTATGGTTAACGTCAGATTCTACCGAAACTATGGGAAAACATTCAAGAA 78
Query 61 GCCACGTCGTCCTTATGAGAAAGAGCGTCTTGATGCTGAGCTAAAGCTTGTAGGAGAATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 79 GCCACGTCGTCCTTATGAGAAAGAGCGTCTTGATGCTGAGCTAAAGCTTGTTGGAGAATA 138
Query 121 CGGTCTTCGTTGTAAGAGAGAGCTTTGGAGAGTTCAATATACACTTAGCCGAATCCGTAA 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 139 CGGTCTTCGTTGTAAGAGAGAGCTTTGGAGAGTTCAATATACACTTAGCAGAATCCGTAA 198
Query 181 TGCTGCAAGAGAACTTTTAACACTTGATGAGAAGAACCCTCGTCGTATCTTTGAAGGTGA 240
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 199 TGCTGCAAGAGAACTCTTAACTCTTGATGAGAAGAATCCTCGTCGTATCTTTGAAGGTGA 258
Query 241 AGCTCTTCTTAGGAGAATGAATCGATATGGTCTTCTTGATGAAAGCCAGAACAAGCTTGA 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 259 AGCTCTTCTTAGGAGAATGAATCGATATGGTCTTCTTGATGAAACCCAGAACAAGCTTGA 318
Query 301 TTATGTTCTTGCTTTGACTGTTGAGAATTTCCTTGAACGTCGTCTTCAAACTATTGTCTT 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 319 TTATGTTCTTGCTTTGACTGTTGAGAATTTCCTTGAACGTCGTCTCCAAACTATTGTCTT 378
Query 361 TAAGTCTGGTATGGCTAAGTCTATTCACCACGCTCGTGTCCTTATCCGACAAAGGCACAT 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 379 TAAGTCTGGTATGGCTAAGTCCATTCACCACGCTCGTGTCCTTATCCGACAAAGGCATAT 438
Query 421 CAGGGTTGGGAGGCAACTTGTGAACATTCCATCGTTTATGGTGAGAGTAGAGTCGCAGAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 439 CAGGGTTGGGAGGCAACTTGTGAACATTCCATCGTTTATGGTGAGAGTAGAGTCACAGAA 498
Query 481 GCACGTTGACTTTTCTCTAACCAGTCCATTCGGTGGTGGTCGACCTGGAAGAGTGAAGAG 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GCACGTAGACTTTTCTCTAACCAGTCCATTCGGTGGTGGTCGACCTGGAAGAGTGAAGAG 558
Query 541 AAGGAACGAGAGAGCTGGAGCTAAGAAAGCTTCTGGTGGTGATGGAGATGAGGATGATGA 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 AAGGAACGAGAGAGCCGGAGCTAAGAAAGCTTCTGGTGGTGATGGAGATGAGGATGATGA 618
Query 601 AGAGTGAAAAGTACCAAACCCCTAAAAAA 629
||||||||||||||||||||| |||||||
Sbjct 619 AGAGTGAAAAGTACCAAACCCTTAAAAAA 647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30341424788
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5