BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494007
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39830.1 | Symbols: DEGP8, DEG8 | Trypsin family protein wit... 2226 0.0
> AT5G39830.1 | Symbols: DEGP8, DEG8 | Trypsin family protein with
PDZ domain | chr5:15942797-15945827 FORWARD LENGTH=1584
Length=1584
Score = 2226 bits (1205), Expect = 0.0
Identities = 1331/1392 (96%), Gaps = 7/1392 (1%)
Strand=Plus/Plus
Query 18 TCGACTGATCTCAGAGTTTTCTTGA-ATTTTGTGGAAAGATGCAGGTAATAGCATCTTTC 76
||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 48 TCGACTGGTCTCAGAGTTTTCTCGATTTTTTTTGGAAAGATGCAGGTAATAGCATCTTTC 107
Query 77 TCTTTGAAACCTAATGAGAATGAATTTGTGGGTCGACGACAACTTCTTTCCTCCGCCTGT 136
| || |||||||||||||||||||||||| |||||||||||||||||||| || | ||||
Sbjct 108 TGTTCGAAACCTAATGAGAATGAATTTGTTGGTCGACGACAACTTCTTTCTTCAGTCTGT 167
Query 137 TCCAGAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCAGTCAAGATTACT 196
|||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 168 TCCAAAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCTGTCAAGGTTACT 227
Query 197 CGAGATTGGAAGTCGAATTTACATGAGTTAGCTATGAAAAGTGTCCCTTCGACGACAAGG 256
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 228 CAAGATTGGAAGTCGAATTTACATGAGTTAGCTGTGAAAAGTGTCCCTTCGACGACAAGG 287
Query 257 CGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCA 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCA 347
Query 317 GCCTTAGCACTTGGTGATCCATCTGTTGCGACCGTTGAAGATGTTAGTCCACCTGTTTTC 376
||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 348 GCCTTAGCACTTGGTGATCCATCCGTTGCAACCGTTGAAGATGTTAGTCCAACTGTTTTC 407
Query 377 CCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTCCAATTGTTTGAGAAAAACACT 436
|||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||
Sbjct 408 CCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTGCAACTGTTTGAGAAGAATACT 467
Query 437 TATTCCGTTGTCAACATATTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTG 496
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TATTCCGTTGTCAACATCTTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTG 527
Query 497 GTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGATGGACAGGGATACATCGTG 556
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 528 GTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGACGGACAAGGATACATCGTG 587
Query 557 ACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAACCCCGGGGATGTGGTT 616
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 588 ACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAGCCCCGGGGATGTAGTT 647
Query 617 GGTCGTGTGAATATTCTGGCATCTGATGGGGTACAAAAGAACTTTGAAGGAAAACTTGTT 676
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 648 GGTCGTGTGAATATTCTGGCATCTGATGGGGTACAGAAGAACTTTGAAGGAAAACTTGTT 707
Query 677 GGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTAGATGC-CCCTGAAACCCTCCT 735
|||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||
Sbjct 708 GGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTGGATGCTCCC-GAAACTCTCCT 766
Query 736 GAAACCGATTAAAGTTGGGCAGTCAAACTCTCTAAAGGTTGGGCAGCAGTGTTTAGCAAT 795
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 767 GAAACCGATTAAAGTTGGGCAGTCAAATTCTCTAAAGGTTGGACAGCAGTGTTTAGCAAT 826
Query 796 TGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGGGTCATCAGCGGTCTTAACCG 855
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 827 TGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGTGTCATCAGCGGTCTTAACCG 886
Query 856 TGACATATTTAGTCAAACCGGAGTGACCATTGGTGGTGGAATTCAAACAGATGCAGCCAT 915
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 887 TGACATATTTAGTCAAACTGGAGTTACCATTGGTGGTGGAATTCAAACTGATGCTGCCAT 946
Query 916 TAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAA 1006
Query 976 CACGGCCATAGTCACACAGACAGGAACATCTGCGGGTGTCGGATTTGCAATTCCGTCATC 1035
||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1007 CACGGCCATTTTCACACAGACAGGAACATCTGCGGGTGTTGGATTTGCTATTCCGTCATC 1066
Query 1036 GACTGTATTAAAGATTGTTCCTCAACTAATCCAATTCAGCAAAGTCCTTCGAGCTGGTAT 1095
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1067 AACAGTATTAAAGATTGTTCCTCAACTAATACAATTCAGCAAAGTCCTTCGAGCTGGTAT 1126
Query 1096 TAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCT 1186
Query 1156 TGTCCTTCAGGTACCCGGAAATAGTCTAGCAGAAAAAGCTGGATTACATCCGACATCCCG 1215
||||||||||||||| || || |||||||| |||||||| ||||||||||||||||||||
Sbjct 1187 TGTCCTTCAGGTACCGGGTAAGAGTCTAGCGGAAAAAGCAGGATTACATCCGACATCCCG 1246
Query 1216 GGGTTTTGCTGGTAACATAGTACTTGGAGATATCATTGTTGCAGTTGATGACAAACCCGT 1275
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1247 GGGTTTTGCTGGTAATATAGTGCTTGGAGATATCATTGTTGCAGTTGATGACAAACCTGT 1306
Query 1276 GAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGA- 1334
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 GAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGAC 1366
Query 1335 ATCTTAAGATCAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCACTTG-AAGAGAAA 1393
| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1367 A-CTTAAGATTAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCA-TTGGAAGAGAAA 1424
Query 1394 AGTTCATGAAAA 1405
||||||||||||
Sbjct 1425 AGTTCATGAAAA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5