BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494010
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39800.1 | Symbols: | Mitochondrial ribosomal protein L27 |... 641 0.0
AT5G40080.1 | Symbols: | Mitochondrial ribosomal protein L27 |... 636 0.0
AT4G09012.1 | Symbols: | Mitochondrial ribosomal protein L27 |... 307 6e-83
AT5G40090.1 | Symbols: | Disease resistance protein (TIR-NBS c... 137 8e-32
> AT5G39800.1 | Symbols: | Mitochondrial ribosomal protein L27
| chr5:15935464-15937132 FORWARD LENGTH=597
Length=597
Score = 641 bits (347), Expect = 0.0
Identities = 449/496 (91%), Gaps = 16/496 (3%)
Strand=Plus/Plus
Query 1 ATTTGGTGGAGAATGACGACGATAGGAGGATTGTTAATGGGGATTGGAAGATCATTCAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 ATTTGGTGGAGAATGACGACGATAGGAGGATTGTTAATGGGGATTGGAAGATCATTCAGA 164
Query 61 AGAAAGAGAGCTTCTTCTCTTGATATTCTCTCTCCCAAAAGAGCTCCAAGAGACTTCTAC 120
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 165 AGAAAGAGATCTTCTTCTCTTGACATTCTCTCTCCCAAAAGAGCTCCAAGAGACTTTTAC 224
Query 121 AAGGGCAGAAACTGCAAATCTT-TGGGTTTCCATACAAGAAAAGGAGGATATGTTGTGCA 179
||||||| |||||||||| || ||| |||||| || |||||||||||||||||||||||
Sbjct 225 AAGGGCAAAAACTGCAAACCTACTGG-TTTCCACACGAGAAAAGGAGGATATGTTGTGCA 283
Query 180 GCCAAATAAATTGCCGAATTACGTAGTCCCTGATCTCACCGGCTTTAAGCTGAAACCATA 239
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GCCAGATAAGTTGCCGAATTACGTAGTCCCTGATCTCACCGGCTTTAAGCTGAAACCATA 343
Query 240 TGTATCTCAGTGCCCTTTACAAGTCAACACAAACGAGTCAACCGAAGCTTCCAAGTGAAA 299
||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 344 TGTATCTCAATGCCCGATACAAGTCAACACAAACGAGTCAACTGAAGCTTCCAAGTGAAA 403
Query 300 A-TAGTCAGTCAGAAGA-A-ATATGGTTTCTTAAGTCTTCTTCATTAAGCTTTAAGTTAG 356
| ||||||||||||||| | ||||| ||| ||||||||||||||| |||||||||||||
Sbjct 404 AATAGTCAGTCAGAAGATATATATG-TTT-TTAAGTCTTCTTCATAAAGCTTTAAGTTAT 461
Query 357 GACTCTGTTCTTCTTTTATCCTTAATCCTTTTGTGCTATTCTCAAAATGGGAGATTTGGT 416
|| | ||||||||| || ||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 462 GATTATGTTCTTCTATTGTCCGTAATCCTTATGTGCTATTCTTAAAATGGGAGATTTGGT 521
Query 417 CTGATATATTCATGAAATGATAATCTAGAATTCCAAAATAATTGGTAACATGTTGATGTG 476
|||||| |||| |||| |||| | | | ||| |||||||||||||||| |||
Sbjct 522 TTGATATTTTCACGAAACGATA-T---G----C-AAAGTAATTGGTAACATGTTTATGCA 572
Query 477 GTGGAATATATATTCA 492
||||||||||||||||
Sbjct 573 GTGGAATATATATTCA 588
> AT5G40080.1 | Symbols: | Mitochondrial ribosomal protein L27
| chr5:16039945-16041623 REVERSE LENGTH=624
Length=624
Score = 636 bits (344), Expect = 0.0
Identities = 446/493 (90%), Gaps = 16/493 (3%)
Strand=Plus/Plus
Query 3 TTGGTGGAGAATGACGACGATAGGAGGATTGTTAATGGGGATTGGAAGATCATTCAGAAG 62
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 TTGTTGGAGAATGACGACGATAGGAGGATTGTTAATGGGGATTGGAAGATCATTCAGAAG 144
Query 63 AAAGAGAGCTTCTTCTCTTGATATTCTCTCTCCCAAAA-GAGCTCCAAGAGACTTCTACA 121
|||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||
Sbjct 145 AAAGAGAGCTTCTTCTCTTGATATCCTCTC-CCCAAAACGAGCTCCTAGAGACTTCTACA 203
Query 122 AGGGCAGAAACTGCAAATCTT-TGGGTTTCCATACAAGAAAAGGAGGATATGTTGTGCAG 180
|||||| |||||||||| || ||| |||||| || ||||||||||||||||||||||||
Sbjct 204 AGGGCAAAAACTGCAAACCTACTGG-TTTCCACACGAGAAAAGGAGGATATGTTGTGCAG 262
Query 181 CCAAATAAATTGCCGAATTACGTAGTCCCTGATCTCACCGGCTTTAAGCTGAAACCATAT 240
||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 263 CCAGATAAGTTACCGAATTACGTAGTCCCTGATCTCACCGGCTTTAAGCTGAAGCCATAT 322
Query 241 GTATCTCAGTGCCCTTTACAAGTCAACACAAACGAGTCAACCGAAGCTTCCAAGTGAAAA 300
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 323 GTATCTCAGTGCCCTCTACAAGTCAACACAAACGAGTCAACTGAAGCTTCCAAGTGAAAA 382
Query 301 -TAGTCAGTCAGAAGAAATATGGTTTCTTAAGTCTTCTTCATTAAGCTTTAAGTTAGGAC 359
|||||| |||| ||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 383 ATAGTCAATCAGGAGAAATATG-TTT-TTAAGTCTTCTTCATAAAGCTTTAAGTTAGGAC 440
Query 360 TCTGTTCTTCTTTTATCCTTAATCCTTTTGTGCTATTCTCAAAATGGGAGATTTGGTCTG 419
||||||||||| || ||| |||||||||||||||||||| ||||||||||||||| | ||
Sbjct 441 TCTGTTCTTCTATTGTCCGTAATCCTTTTGTGCTATTCTTAAAATGGGAGATTTGATTTG 500
Query 420 ATATATTCATGAAATGATAATCTAGAATTCCAAAATAATTGGTAACATGTTGATGTGGTG 479
|||| |||| |||| || | | | | ||| |||||||||||||||| ||| |||
Sbjct 501 ATATTTTCACGAAACGACA-T---G----C-AAAGTAATTGGTAACATGTTTATGCAGTG 551
Query 480 GAATATATATTCA 492
|||||||||||||
Sbjct 552 GAATATATATTCA 564
> AT4G09012.1 | Symbols: | Mitochondrial ribosomal protein L27
| chr4:5780470-5783464 REVERSE LENGTH=527
Length=527
Score = 307 bits (166), Expect = 6e-83
Identities = 240/275 (87%), Gaps = 8/275 (3%)
Strand=Plus/Plus
Query 27 AGGATTGTTAATGGGGATTGGAAGATCATTCAGAAGAAAGAGAGCTTCTTCTCTTGATAT 86
||| |||||| | |||||||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 257 AGGGTTGTTATTCGGGATTGGAAGAACATTCCGAAGAAAGAGAGCTTCTTCGCTTGATAT 316
Query 87 TCTCTCTCCCAAAAGAGCTCCAAGAGACTTCTACAAGGGCAGAAACTGCAAATCT-TTGG 145
||||||||||||| ||||||| |||||||| |||||||| | |||||| ||| || | |
Sbjct 317 TCTCTCTCCCAAACGAGCTCCCAGAGACTTTTACAAGGGAAAAAACTGTAAACCTCCT-G 375
Query 146 GTTTCCATACAAGAAAAGGAGGATATGTTGTGCAGCCAAATAAATTGCCGAATTACGTAG 205
||||||| || | || ||||||||||||||||||| |||||||||| || |||||||
Sbjct 376 GTTTCCACACTCG-TAA--AGGATATGTTGTGCAGCCAGATAAATTGCCAAACTACGTAG 432
Query 206 TCCCTGATCTCACCGGCTTTAAGCTGAAACCATATGTATCTCAGTGCCCTTTACAAGTCA 265
|||||||| | || ||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 433 TCCCTGATTTGACTGGCTTTAAGCTGAAACCATATGTATCTCAGTGCCCTTTAGACGTCA 492
Query 266 ACA---CAAACGAGTCAACCGAAGCTTCCAAGTGA 297
||| ||||||||||||| |||||||||||||||
Sbjct 493 ACAAAACAAACGAGTCAACTGAAGCTTCCAAGTGA 527
> AT5G40090.1 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr5:16041919-16043494 REVERSE LENGTH=1576
Length=1576
Score = 137 bits (74), Expect = 8e-32
Identities = 100/112 (89%), Gaps = 3/112 (3%)
Strand=Plus/Plus
Query 329 AAGTCTTCTTCATTAAGCTTTAAGTTAGGACTCTGTTCTTCTTTTATCCTTAATCCTTTT 388
||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1441 AAG-CTTCCTCACTAAGCTTTAAGTTAGGACTCTGTTCTTCTATTATCCTTAATCCTTTT 1499
Query 389 --GTGCTATTCTCAAAATGGGAGATTTGGTCTGATATATTCATGAAATGATA 438
|||||||||| ||||||| ||||||||| |||||| |||| |||| ||||
Sbjct 1500 TTGTGCTATTCTAAAAATGGTAGATTTGGTTTGATATTTTCACGAAACGATA 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5