BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494013
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39785.2 | Symbols: | Protein of unknown function (DUF1666)... 2765 0.0
> AT5G39785.2 | Symbols: | Protein of unknown function (DUF1666)
| chr5:15929188-15932276 FORWARD LENGTH=1954
Length=1954
Score = 2765 bits (1497), Expect = 0.0
Identities = 1806/1947 (93%), Gaps = 53/1947 (3%)
Strand=Plus/Plus
Query 1 ACAATTGTTGAAACCGACACAACAAAGACTCAG-TTTTTATTC-ATACTCgaagaatcag 58
||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||
Sbjct 1 ACAATTGTTGAAACCGACACAACAAAGACTC-GATTTTTA-TCTGTACTCGAAGAATCAG 58
Query 59 aagaagcgaagatgattgatttagaaaattctggaatcgatgaagaagaagaagaagTT- 117
|||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 59 TAGAAGCGAAGATGATTGAATTAGAAAATTCTGGAATC---GAAGATGAAGAAGAAGTTA 115
Query 118 GTCGAATCGCCGAAATTGGTTTTTAAATTCGCGTTTCAAACGGAAACTTTCGAGAGATTA 177
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 116 GT-GAATCGCCGAAATTGGTTTTTAAATTCGCGTTTCAGACGGAAACTTTCGAGAGATTA 174
Query 178 AGCAGAGAAGGGTATCA-ATCGGTCACTGATGATT-CTG-GT-GAGAGCGAGAGTAGTTT 233
||||||||||| ||| | |||| | | |||||||| | | || ||||||||||| |||||
Sbjct 175 AGCAGAGAAGGTTAT-AGATCGTTGAGTGATGATTGCGGTGTGGAGAGCGAGAGCAGTTT 233
Query 234 TTTG---TC---TTCTTCTCCGGCGGTTTTCACGGCGGCGGCGAGAAAATACGAGACACC 287
|||| || ||||||||||| | |||| |||||||||||||| ||||||||||||||
Sbjct 234 TTTGTCTTCTGATTCTTCTCCGGTGATTTTTACGGCGGCGGCGAGGAAATACGAGACACC 293
Query 288 GTCGGCGAAAAATCTCACTTTTGTCCTCGAAAACCCAAAGGCGGCGACTTTTA-----G- 341
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 294 GTCGGCGAAAAATCTCACCTTTGTCCTCGAAAACCCAAAGGCGGCGACTTTTAGGGTTGA 353
Query 342 -G---G-TT---------G-AAGAGAAAACAGAGGATTTAGATTACTCTGTTTTTGACGG 386
| | || | ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 354 AGATTGTTTGAAGGAGAAGCAAGAGAAAACAGAGGATTTAGGTTACTCTGTTTTTCACGG 413
Query 387 CGAGGAGAGAGCAAAAACAGAGGACTACTCTGTTTCTTCCATCGAGAAGaaaaaaaTCAG 446
|||||| | || |||||||||||| ||||||||||| ||| | ||||||||||||||||
Sbjct 414 CGAGGATAAAGTAAAAACAGAGGATTACTCTGTTTCATCCTTTAAGAAGAAAAAAATCAG 473
Query 447 ATTTTTAACTGAAGAAGATTTTTTGGAATCGGATTCTGATTTTGTTGATTCAAGTCAGAC 506
||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 474 ATTTTTAACAGAGGAAGATTTTTTGGAGTCGGACTCTGATTTTGTTGATTCAAGTCAGAC 533
Query 507 ATTCACAAGCAACGACGAAGATGGGTTTTTATCAGATTCAGATTTCGCAGAAGCATCACT 566
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 534 ATTCACAAGCAACGACGAAGATGGGTTTTTATCAGATTCAGATTTCGCAGAAACATCACT 593
Query 567 GGAGAAAGGACAAAACCGTAAAAACGACAATTCTGGTTCTGGTTCTGATTCAGAGgaaga 626
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 GAAGAAAGGACAAAACCGTAAAAGCGACAATTCTGGTTCTGGTTCTGATTCAGAGGAAGA 653
Query 627 agaagaagaagaTACAAATGGGTTTGAGAGTTTATGGGAACATCAAGATTTGATAGAACA 686
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 AGAAGAAGAAGATACAAATGGGTTTGAGAGTTTATGGGAGCATCAAGATTTGATAGAACA 713
Query 687 ACTTAAAATGGAGATGAAGAAAGTTAAAGCAATTGGTGGGCTTTCGACAATTCTTgaaga 746
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 714 ACTTAAGATGGAGATGAAGAAAGTTAAAGCAATTGGTGGGCTTACGACAATTCTTGAAGA 773
Query 747 agaagaagaagaagaTGATTGTCCTAAGATCATGGAAGATTTAAAACCATGGAAGATTGA 806
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 774 AGAAGAAGAAGATGATGATTGTCCTAAGATCATGGAAGATTTAAAACCATGGAGGATTGA 833
Query 807 AGAAGAGAAGAAATTTAAACATGTTGATACGATTGGTGAAGTTCATAAGTTCCATAGAAG 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AGAAGAGAAGAAATTTAAACATGTTGATACGATTGGTGAAGTTCATAAGTTCCATAGAAG 893
Query 867 TTACAGAGAAAGAATGCGAAAACTTGATATCTTGAGTTTTCAAAAGTCTTATGCTCTTGG 926
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTACAGAGAAAGAATGCGAAAGCTTGATATCTTGAGTTTTCAAAAGTCTTATGCTCTTGG 953
Query 927 GCTTCTTCAGTCAAAGAACCCTCAACAAGCAACCTCTG-CCGTTGGATCCAATCCTTCGC 985
||||||||| ||||||| |||||||||||||||||| | || ||||||||||||||||||
Sbjct 954 GCTTCTTCAATCAAAGAGCCCTCAACAAGCAACCTC-GACCCTTGGATCCAATCCTTCGC 1012
Query 986 AGACGTCATTTTCATCGGTTTTCTCAGTTAATGGAT--GGTTATGGAAAGCGAAGAAATC 1043
|||| || ||||| ||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 1013 AGACATCGTTTTCGTCGGTTTTCTCGGTTAAT--ATCCGGTTATGGAAAGCGAAGAAATC 1070
Query 1044 GGAAACCGAACCAATGGTTCAATTCATAAAAGAGATTCAGGGGGAATTAGAGAACGTATA 1103
|||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1071 TGAAATCGAACCAATGGTTCAATTTGTAAAAGAGATTCAAGGGGAATTAGAGAACGTATA 1130
Query 1104 CGTTGGTCAAATGTGTTTGTCGTGGGAAATACTTCACTGGCAATACGAAAAGGCCATTGA 1163
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CGTAGGTCAAATGTGTTTGTCGTGGGAAATACTTCACTGGCAATACGAAAAGGCCATTGA 1190
Query 1164 ATTACTGGAATCTGATGTGTATGGATCTCGTCTGTACAACGAAGTCGCCGGAGAATTTCA 1223
||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1191 GTTACTAGAATCTGATGTGTATGGATCTCGTCGGTACAACGAAGTCGCCGGAGAGTTTCA 1250
Query 1224 ACAGTTTCAGGTTTTGCTTCAAAGGTTTCTTGAAAACGAGCCGTTTGAAGAGCCTAGAGT 1283
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1251 ACAGTTTCAGGTTTTGCTTCAAAGGTTTCTTGAAAACGAGCCATTCGAAGAGCCTAGAGT 1310
Query 1284 ACAACATTACATCAAGAGACGATGTGTTCTTCGTAATCTCCTTCAGGTCCCGGTTATTCG 1343
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1311 ACAACATTACATCAAGAGACGTTGTGTTCTTCGTAATCTCCTTCAGATCCCGGTTATTCG 1370
Query 1344 AGAAGATGGAAACAAGGACAAAAAGAATGGAAGAAGAAAAGATTACGAGGGAAATGATGA 1403
|||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||
Sbjct 1371 AGAAGATGGAAACAAGGACAAAAAGAATGGCAGAAGAAGAGATTACGAGGAAAATAATGA 1430
Query 1404 TGGTGCGACTAAAAGCGATCAGCTAGTGGAAATAATGGAAGAAACAATTCGATTATTCTG 1463
|||| || |||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 1431 CGGTGTGATTAAAAGCGATCAACTAGTGGAAATAATGGAGGAAACAATTCGATTATTTTG 1490
Query 1464 GCGATTTGTACGGTGTGATAAGCTTACTAGCTCGATTCATGATCAGAAATCGCGAACTAA 1523
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1491 GCGATTTGTTCGGTGTGATAAGCTTACTAGCTCGATACATGATCAGAAATCGCGAACCAA 1550
Query 1524 ATCTCAGATAGAACCGGATCATGAAGAAGACTCAGAAGATCTAGAGATGTTCGCCGAGGT 1583
||| || |||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1551 ATCACAAATAGAACCGGATCATGAAGAAGACTCGGAAGACCTAGAGATGTTCGCAGAGGT 1610
Query 1584 TAAATCACAACTTCAAAATGTAAGTGAGAAAAGGTTGAAAGATGTGTTGAAGAGTGAGAG 1643
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1611 TAAATCACAACTTCAAAATGTAAGTGAGAAAAGGTTGAGAGATGTGTTGAAAAGTGAGAG 1670
Query 1644 ATGTATTATAAGAAGATTCCAAAAGCACAAGGAAGAAGAATC-AGCAGAAGATCAAGTAC 1702
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 1671 ATGTATTATAAGAAGATTCCAAAAGCACAAGGAAGAAGATTCGA-CAGAAGATCAAGTAC 1729
Query 1703 TTCACTTCTTCTCACAAGTAGACATGAAACTTGTGACAAGGGTCTTGAATATGTCCAAAT 1762
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1730 TTCACTTCTTCTCACAAGTAGACATGAAACTTGTGACAAGAGTCTTGAATATGTCTAAAT 1789
Query 1763 TGACTAGGGACCATTTGGTTTGGTGTCATAATAAGTTAACCAAGATTAACTTTGTAAATA 1822
|||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||
Sbjct 1790 TGACTAGGGACCATTTGGTTTGGTGTCACAATAAGTTGACTAAGATTAACTTCGTAAATA 1849
Query 1823 GAAGGTTACATTTAGATCCTTCCTTTTGT-TTATTCCCTTGTTGAGATTTTTGATATTGA 1881
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1850 GAAGGTTACATTTAGATCCTTCCTTTTGTCTT-TTCCCTTGTTGAGATTTTTGATATTGA 1908
Query 1882 CAAAA--GTACATTGGAGTAATAATGA 1906
|||| ||||||||||||||||||||
Sbjct 1909 CAAATTTGTACATTGGAGTAATAATGA 1935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94377024600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5