BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494014
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39760.1 | Symbols: AtHB23, HB23, ZHD10 | homeobox protein 2... 1797 0.0
AT3G28920.1 | Symbols: AtHB34, HB34, ZHD9 | homeobox protein 34... 449 2e-125
> AT5G39760.1 | Symbols: AtHB23, HB23, ZHD10 | homeobox protein
23 | chr5:15911416-15912830 FORWARD LENGTH=1415
Length=1415
Score = 1797 bits (973), Expect = 0.0
Identities = 1138/1213 (94%), Gaps = 30/1213 (2%)
Strand=Plus/Plus
Query 58 ATATTAATGTTTTAAGCTATGATGGATATGACTCCTACAATAACAACAACAAC-A-A-CT 114
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 110 ATATTAATGTTTTAAGCTATGATGGATATGACTCCTACAATAACAACAACAACAACACCA 169
Query 115 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 229
Query 175 ATTTCCTTTAGCAACGGCATCATCAAACG------CCACCACCACCATCCTCTCCTCTTT 228
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 230 ATTTCCTTTAGCAACGGCATCATCAAACGCCACCACCACCACCACCATCCTCTCCTCTTT 289
Query 229 ACTTACAAAGAATGTCTCAAAAACCACGCGGCGTCGTTAGGTGGTCATGCTCTCGACGGT 288
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 290 ACTTACAAAGAATGTCTCAAAAACCACGCGGCGGCTTTAGGTGGTCACGCTCTCGACGGT 349
Query 289 TGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCCTCCGATCCAACTTCTCTCAAATGT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCCTCCGATCCAACTTCTCTCAAATGT 409
Query 349 GCTGCTTGTGGCTGCCACCGTAATTTCCACCGCCGTGATCCAGACAACAACAACGACTCA 408
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 410 GCTGCTTGTGGCTGCCACCGTAATTTCCACCGCCGTGATCCAGATAACAACAACGACTCT 469
Query 409 TCCCCAATCCATCCTCCTCCTTCTACCGCCGTAGAGTATCAacctcaccaccgtcatcat 468
|||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 470 TCCCAAATCCCTCCTCCTCCTTCCACCGCCGTAGAGTATCAACCTCACCACCGTCATCAT 529
Query 469 ccaccaccaccactacctccaccaccgccacGTAGTCCTAACTCTGCTTCTCCTCCACCA 528
||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 530 CCACCACCACCACCACCTCCTCCACCACCACGTAGTCCTAACTCAGCTTCTCCTCCACCA 589
Query 529 ATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGAACTAATAACAACAACAACAACTTA 588
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 590 ATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGTACTAATAACAACAACAACAACTTA 649
Query 589 GCTTCTTTCTCCGATCTCAATTTCTCCGGCGGAAACAACCACCACCACCACCA--A-CAT 645
||||||||||||||||| || ||||||| |||||||||||||||||||||||| | |||
Sbjct 650 GCTTCTTTCTCCGATCTTAACTTCTCCGCCGGAAACAACCACCACCACCACCACCAACAT 709
Query 646 ACTCTTCACGGTTCTCGTAAAAGATTCCGAACAAAATTCAGTCAGTTTCAGAAAGAGAAG 705
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 710 ACTCTTCACGGATCTCGTAAAAGATTCCGAACAAAATTCAGCCAGTTTCAGAAAGAGAAG 769
Query 706 ATGCATGAATTCGCCGAACGACTTGGTTGGAAGATGCAGAAACGTGACGAAGACGATGTT 765
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 770 ATGCATGAATTCGCCGAACGTGTTGGTTGGAAGATGCAAAAACGTGACGAAGACGATGTT 829
Query 766 CGTGATTTTTGCCGGCAGATCGGAGTTGATAAAAGTGTTCTTAAAGTTTGGATGCATAAC 825
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 830 CGTGATTTTTGCCGGCAGATCGGAGTTGATAAAAGTGTTCTCAAAGTTTGGATGCATAAC 889
Query 826 AACAAAAACACTTTTAACCGCCGTGATCTCGCCGGAAACGAGATCCGG-AAGATCGATAA 884
||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 890 AACAAAAACACCTTTAACCGCCGTGATATCGCCGGAAACGAGATCCGGCAA-ATCGATAA 948
Query 885 CGGCGGAGGAAACCATACTCCGATTCTAACCGGCGAGATTAACAACAATAACAATGGACA 944
||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 949 CGGCGGAGGAAACCACACTCCGATTCTCGCCGGCGAGATTAATAACCATAACAATGGACA 1008
Query 945 CCACGA---CGGCGGAGGAGGAGAGCTTCACCACAGTATTAGTAGCGGCGGTGG---CGG 998
||||| ||| |||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 1009 CCACGGTGTCGGAGGAGGAGGAGAGCTTCACCAGAGTGTTAGTAGCGGCGGTGGTGGCGG 1068
Query 999 AGGATTTGATAGTGATAGCGGCGGAGCTAACGGCGGTAACGTTAACGGATCGTCGTCGTC 1058
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1069 AGGATTTGATAGTGATAGCGGCGGAGCTAACGGTGGTAACGTTAACGGATCATCGTCGTC 1128
Query 1059 GTGAAGTTAAAGATGAGAGTATCAGATTAATAAGAAGCTTAAGAGTAAGCTTATTCGTAT 1118
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct 1129 GTGAAGTTAAAGATGAGAGTGTCAGGTTAATAAGAAGCTTA-GAGTAAGCTTATTCGTAT 1187
Query 1119 TATCATCGTTAATAACtttttattaa-tattaattgaa-atatttagttatgtgtgtttg 1176
||||||||||||||||||| |||||| |||||||| || || ||||| | | ||| || |
Sbjct 1188 TATCATCGTTAATAACTTTCTATTAAATATTAATT-AAGATCTTTAGCT-T-TGT-TT-G 1242
Query 1177 tttttgcattattattttaGCTTTAATTAAATGTTCTTTACCACGTCGGTGTCTCGCTCA 1236
|||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1243 TTTTTGCATTATTATT--AGTTTTGATTTAATGTTCTTTACCACGTCGGTGTCTCGCTCG 1300
Query 1237 ATGAGGAATAATA 1249
|||||||||||||
Sbjct 1301 ATGAGGAATAATA 1313
> AT3G28920.1 | Symbols: AtHB34, HB34, ZHD9 | homeobox protein
34 | chr3:10940446-10941833 REVERSE LENGTH=1388
Length=1388
Score = 449 bits (243), Expect = 2e-125
Identities = 590/749 (79%), Gaps = 58/749 (8%)
Strand=Plus/Plus
Query 115 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 174
||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 325 ACTCCAAAATCACCAGAACCCGAATCCGAAACTCCGACCCGGATCCAACCAGCTAAACCA 384
Query 175 ATTTCCTTT-AGCAACGGCATCATCAAACGCCACCACCACCA--TCCTC-TC--C-TC-- 225
|| | |||| || ||||| ||||||||||||||||||||||| || | | | |
Sbjct 385 ATCT-CTTTCAGTAACGGAATCATCAAACGCCACCACCACCACCACCACAACAACAACAA 443
Query 226 -TTTACTTACAAAGAATGTCTCAAAAACCACGCGGCGTCG-TTAGGTGGTCATGCTCTCG 283
| |||||||||||||||||||| |||||||||||| || || |||||||| || || |
Sbjct 444 AGTCACTTACAAAGAATGTCTCAAGAACCACGCGGCGGCGATT-GGTGGTCACGCGCTTG 502
Query 284 ACGGTTGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCC-TCCGATCCAACTTCTCTC 342
|||||||||||||||| ||||||||||| ||||||| | || ||||||||||||||||||
Sbjct 503 ACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAA-CACCTTCCGATCCAACTTCTCTC 561
Query 343 AAATGTGCTGCTTGTGGCTGCCACCGTAATTTCCACCGCCGTGATCCAGACAACAACAAC 402
|| ||||| |||||||| || |||||||| |||||||||||||| | ||| | | |
Sbjct 562 AAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCTCC 621
Query 403 GAC--T-CATCC-CC-AATC--CATCC-TCCTC--CTTCTACCGCCG---TAGAGTATCA 449
| | | || || || || | ||| || || | | ||||||| | ||||||||
Sbjct 622 GCCGTTCCA-CCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATCA 680
Query 450 acctcaccaccgtcatcatccaccaccaccactacctccaccaccgccacGTAGTCCTAA 509
||||| |||||||||||||| || || || ||| |||| || ||||||||||||||
Sbjct 681 GCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCGTTACCACGTAGTCCTAA 740
Query 510 CTC-TGCTTCTCCTCCACCAATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGAACTA 568
|| | ||||||| || || ||||||||||| |||||||| ||| |||||||||| ||
Sbjct 741 TTCAT-CTTCTCCGCCGCCTATCTCTTCCTCCTACATGCTTTTAGCTCTCTCCGG---TA 796
Query 569 ATAACAACAACAACAACTTAGCTTCTTTCTCCGATCTCAATTTCTCCGGCGGAAAC-AAC 627
|||| || ||| | | | | | ||||| ||||| || ||| || || | | |||
Sbjct 797 ATAATAA-AAC--C-GC--A-C--CGTTCTCAGATCTAAACTTCGCC-GCCGCGGCTAAC 846
Query 628 CACCACCACCACCAACATACTCTTCACGGTTCTCGTAAAAGATTCCGAACAAAATTCAG- 686
|| | | || || || | | | || || | || ||||| | || || || ||
Sbjct 847 CATC-TCTCCGCC-AC--GC-C-T---GGCTCGAGGAAGCGATTCAGGACGAAGTTTAGC 897
Query 687 TCAGTTTCAGAAAGAGAAGATGCATGAATTCGCCGAACGACTTGGTTGGAAGATGCAGAA 746
||| |||||||||||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 898 TCA-AATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAGATTCAGAA 956
Query 747 ACGTGACGAAGACGATGTTCGTGATTTTTGCCG-GCAGATCGGAGTTGATAAAAGTGTTC 805
||||||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 957 ACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTG-AGATCGGAGTTGATAAAGGTGTTC 1015
Query 806 TTAAAGTTTGGATGCATAACAACAAAAAC 834
| ||||||||||||||||| |||||||||
Sbjct 1016 TCAAAGTTTGGATGCATAATAACAAAAAC 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5