BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494019
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39730.1 | Symbols: | AIG2-like (avirulence induced gene) f... 1074 0.0
> AT5G39730.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr5:15901679-15902870 FORWARD LENGTH=826
Length=826
Score = 1074 bits (581), Expect = 0.0
Identities = 712/773 (92%), Gaps = 18/773 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaacagagtaaaaagattgaaaaaaaaaaaaTGAGTAACTCCGATTTTCCTCA 60
|||||||||||||||| | ||||||| |||||||||||||||| |||||||| ||||||
Sbjct 27 AAAAAAAAAACAGAGT--AGAGATTGATAAAAAAAAAATGAGTAGCTCCGATTCTCCTCA 84
Query 61 GCTTCACAATATCTTCGTCTATGGTAGCTTTCAAGAGCCTGACGTCATCCATGTCATGCT 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 85 GCTTCACAATATCTTCGTCTATGGTAGCTTTCAAGAGCCTGACATCATCCATGTCATGCT 144
Query 121 TAATCGTATTCCTGAGATCGTCTCTGCAACACTTCATGGCTTTCAGAGGTTTAGGCTTAA 180
|||||||||||||||||| |||||||||||||||| ||||||| |||| |||||||||||
Sbjct 145 TAATCGTATTCCTGAGATTGTCTCTGCAACACTTCCTGGCTTTAAGAGATTTAGGCTTAA 204
Query 181 AGGACGCTTGTATCCATGTATTGTTCCCTCTGAGAATGGACAAGTTCATGGAAAGGTACT 240
|||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 205 AGGACGTTTGTATCCATGTATTATCCCCTCTGAGAATGGAGAAGTTCATGGAAAGGTACT 264
Query 241 AATGGGATTAACGAATGATGAACTTGAGAATGTAGATTGGGTTGAAGGAAATGAATATGA 300
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 265 AATGGGATTGACTAATGATGAACTTGAGAATGTAGATTGGGTTGAAGGAAACGAATATGA 324
Query 301 AAGAGTGACTGTTGAAGTTGTAAGAAAAGACAATTCTGAGAAGATGACAGTGGAAACATA 360
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 325 AAGAGTGTTTGTTGAAGTTGTAAGAAAAGACAATTCTGAGAAGATGAGAGTGGAAACATA 384
Query 361 TCCATGGATTAACAAGAATGATCCTGATATTGGTGGAGAATGGGATTTCGAGGAATGGAA 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TCCATGGATCAACAAGAATGATCCTGATATTGGTGGAGAATGGGATTTCGAGGAATGGAA 444
Query 421 ACGATTGCACATGAAGAAATTCATAGAGGCGTTCACGGAGATTATGGAGAGGAAGAGGAA 480
|||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 445 ACGATTACACATGAAGACATTCATAGAGGCGTTCACGGAGATCATGGAAAGGAAGAGGAA 504
Query 481 TCCACTGGGAAAGGGAAGAGATGATTTCAGCCATGTCCTAAAAGAAGATGGTTCCGGGAA 540
||||| |||||||| ||||||||||||||| |||| || |||||||| | | ||| |||
Sbjct 505 TCCACAAGGAAAGGGTAGAGATGATTTCAGCAATGTACTCAAAGAAGAAGATCCCGCGAA 564
Query 541 TGCTCCATCGTCTTGAATGGATTTGTGTTTAGTATAATCTATATATCAACTTTGGGTCTA 600
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 565 TGCTCCATCGTCTTGAATGGATTTGTGTCGAGTATGTTCTATATATCACCTTTGTGTCTA 624
Query 601 AACTCCGA-ATTAAATAAAAAA-GCTGGAGAGTCTAGCTAGGT-ATTGTGGAGACTAATG 657
|||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 625 AACTCC-ATATTAAATAAAAAAAGCTGGAGAGTCTAGCTAGGTTATTGTGGAGACTAATG 683
Query 658 ACAAGAATAGTTTT-GTCATGTTGTATTGTAAGATTTGAGTTATA-AT---GTGGATTGT 712
|||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 684 ACAAGAAT-GTTTTTGTCATGTTGTATTGTAAGATTTGAGTTATATATCATGTGGATTGT 742
Query 713 ATTATTGTGTTTTAAGTCATTAAGAGTCTTGAAGATATTTTGGCATCTTACTT 765
||||||||||| || || | ||||||| |||| |||||||||||||||||
Sbjct 743 ATTATTGTGTTATA---CA--A-GAGTCTTTAAGAGATTTTGGCATCTTACTT 789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5