BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494022
Length=2317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR)... 3321 0.0
> AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:15884001-15886388 REVERSE LENGTH=2388
Length=2388
Score = 3321 bits (1798), Expect = 0.0
Identities = 2030/2145 (95%), Gaps = 4/2145 (0%)
Strand=Plus/Plus
Query 1 TTTGGCGCCATGTCAGCCTTGTCTGTGATCGAACAACGATTGCTAAAGTGGGACAAGCTC 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 12 TTTGGCGCCATGTCAGCCTTGTCTGTGATCGAACAACGATTGTTAAAGTGGGACAAGCTC 71
Query 61 GCGTCTTTAGTACCCAAACCAAAGAAACCT-CTGTTTCCGATTGATCGTCTTAACGAGCT 119
|||||||||||||||||| |||| ||| || || ||||||||||||||||| ||||||||
Sbjct 72 GCGTCTTTAGTACCCAAATCAAAAAAAACTCCT-TTTCCGATTGATCGTCTAAACGAGCT 130
Query 120 TTTGAAAGTCTGTGCTAATTCAAGTTATCTAAGAACTGGAGAATCGATTCACGGTCATTT 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 131 TTTGAAAGTCTGTGCTAATTCAAGTTATCTAAGAATTGGAGAATCGATTCACGCTCATTT 190
Query 180 GATTGTTACCAACCAATCATCTAGAGCTAAAGACGTGTATCAGATCAATTCTTTGATTAA 239
|||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||
Sbjct 191 GATTGTTACCAACCAATCATCTAGAGCTGAAGACGCGTATCAGATCAATTCTCTGATCAA 250
Query 240 TCTCTATGTGAAATGCGGAGAAACTGTTCGTGCACGCAAGGTGTTCGATTTAATGCCTGA 299
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 251 TCTCTATGTGAAATGCAGAGAAACTGTTCGTGCACGCAAGCTGTTCGATTTAATGCCTGA 310
Query 300 GAGAAATGTGGTTTCTTGGTGTGCGATGATGAAGGGTTATCAAAATTCTGGGTTTGATTT 359
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 311 GAGAAATGTTGTTTCTTGGTGTGCGATGATGAAGGGATATCAAAATTCTGGGTTTGATTT 370
Query 360 TGAAGTTTTGAAGCTTTTTAAAAGTATGGTTTTTTCTGATGAATCGAGACCTAATGAGTT 419
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 371 TGAAGTTTTGAAGCTTTTTAAAAGTATGTTTTTTTCTGGTGAATCGAGACCTAATGAGTT 430
Query 420 TGTAGCTACTGTGGTTTTTAAGTCTTGTTCAAGCTCTGGGAGGATTGAAGAAGGTAAACA 479
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 431 TGTAGCTACTGTGGTTTTTAAGTCTTGTTCAAACTCTGGGAGGATTGAAGAAGGTAAACA 490
Query 480 GTTTCATGGTTGTTTTCTTAAATCTGGTTTGATGTCTCATGAGTTTGTACGGAATACTCT 539
||||||||| ||||||||||| | ||||||||| |||||||||||||||||||| |||||
Sbjct 491 GTTTCATGGATGTTTTCTTAAGTATGGTTTGATTTCTCATGAGTTTGTACGGAACACTCT 550
Query 540 TGTCTACATGTATTCTTTGTGTTCGGGTAATGGAGAAGCTATACGAGTTTTGGATGATCT 599
||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 551 TGTTTACATGTATTCTTTGTGTTCGGGGAATGGCGAGGCTATACGAGTTTTGGATGATCT 610
Query 600 TCCTTATTGTGATCTTTCTGTGTTTAGTTCAGCTCTTAGTGGTTATTTAGAGTGTGGTGC 659
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 611 TCCTTATTGTGATCTTTCTGTGTTTAGTTCTGCTCTTAGTGGTTATCTAGAGTGTGGTGC 670
Query 660 TTTTAAAGAAGGGGC-TGAGGTTTTGAGAAGGATGGCTAAGGAAGATTTGGTTTGGGACA 718
|||||||||| |||| ||| |||||||||| || ||||| |||||||| |||||| |||
Sbjct 671 TTTTAAAGAA-GGGCTTGATGTTTTGAGAAAGACAGCTAACGAAGATTTTGTTTGGAACA 729
Query 719 ACATTACGTATTTGTCTTGTTTACGGCTTTGCTCCAATCTCAGAGATTTGAATTTGGCTA 778
|| | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 730 ACCTCACGTATTTGTCTTCTTTACGGCTTTTCTCCAATCTCAGAGATTTGAATTTGGCTC 789
Query 779 GGCAGATTCATAGCCGAATGGTGAGGTTAGGTTTCAACTCTGAAGTTGAGGCATGTGGTG 838
|||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||
Sbjct 790 TGCAGGTTCATAGCCGAATGGTGAGGTTTGGTTTCAACGCTGAAGTTGAGGCTTGTGGTG 849
Query 839 CAATCATTAATATGTATGGGAAATGTGGTAAAGTCCTATATGCCCAGAGAGTTTTCGACA 898
|| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 850 CACTCATTAATATGTATGGCAAATGTGGTAAAGTCCTTTATGCTCAGAGAGTTTTCGATG 909
Query 899 ATACACACGCTCAGAACATTGTCTTGAATACAACGATAATGGATGCTTACTTCCAGGATA 958
||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 910 ATACACACGCTCAAAACATTTTCTTGAATACAACGATCATGGATGCTTACTTCCAGGATA 969
Query 959 AGTCTTTTGAGGAAGCTCTGAATCTGTTTTCAAAGATGGACACTAAAGAGGTTCCTCCGA 1018
||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 970 AGTCTTTCGAGGAGGCTCTGAATCTGTTTTCAAAGATGGATACTAAAGAGGTTCCACCAA 1029
Query 1019 ATGAGTACACCTTTGCTATTTCGTTGAATTCAATTGCAGAGCTTTCCCTTCTAAAACATG 1078
||||||||||||||||||||| | ||||||||||||||||||| || ||||||||||| |
Sbjct 1030 ATGAGTACACCTTTGCTATTTTGCTGAATTCAATTGCAGAGCTATCGCTTCTAAAACAGG 1089
Query 1079 GCGATCTTTTACATGGACTTGTTTTGAAATCTGGTTATAGGAACCATGTAATGGTGGGCA 1138
|||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1090 GCGATCTTCTACATGGACTTGTTTTGAAATCCGGCTATAGGAACCATGTAATGGTAGGCA 1149
Query 1139 ATGCATTGGTTAACATGTACGCTAAAAGTGGCAGCATTGAGGATGCAAGGAAAGCATTCT 1198
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1150 ATGCATTGGTTAACATGTACGCCAAAAGTGGCAGCATTGAGGATGCAAGGAAAGCATTCT 1209
Query 1199 CAGGCATGACTTTTAGAGATATAGTTACTTGGAACACAATGATATGTGGATTCTCACATC 1258
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1210 CAGGCATGACTTTTAGAGATATAGTTACTTGGAACACAATGATATCTGGATGCTCACATC 1269
Query 1259 ATGGATTGGGGAGGGAAGGGCTTGAAGCCTTTGATAGAATGATGATTGCTGGAGAGATTC 1318
|||||||||||||||||| |||||||||||||||||||||||| || | ||||||||||
Sbjct 1270 ATGGATTGGGGAGGGAAGCGCTTGAAGCCTTTGATAGAATGATTTTTACAGGAGAGATTC 1329
Query 1319 CCAATCGCATAACTTTTATCGGCGTTTTGCAGGCTTGTAGCCATGTTGGTTTTGTGGAGC 1378
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1330 CCAACCGCATAACTTTTATCGGCGTTTTGCAGGCTTGTAGCCATATTGGTTTTGTGGAGC 1389
Query 1379 AAGGGCTTTATTACTTTAATCAGCTAATGAAGAAATTTGATGTTCAGCCTGATCTACAGC 1438
|||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1390 AAGGGCTTCATTACTTTAATCAGCTGATGAAGAAATTTGATGTCCAGCCTGATATACAGC 1449
Query 1439 ATTATACATGCATTGTTGGACTTTTGAGCAAGGCTGGAATGTTCAAGGATGCTGAGGATT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 ATTATACATGCATTGTTGGACTTTTGAGCAAGGCTGGAATGTTCAAGGATGCTGAGGATT 1509
Query 1499 TCATGAGAACAGCTCCGATTGAATGGGACGTTGTTGCGTGGAGAGCTTTGCTAAATGCTT 1558
|||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 1510 TCATGAGAACAGCTCCAATTGAATGGGATGTTGTTGCATGGAGAACTTTGCTAAATGCTT 1569
Query 1559 GTTATGTTCGCCGGAATTTCAGGTTAGGAAAGAAGGTAGCAGAATATGCCATTTATAAGT 1618
|||||||||||||||||| |||||||||||| || |||||||||||||||||| | ||||
Sbjct 1570 GTTATGTTCGCCGGAATTACAGGTTAGGAAAAAAAGTAGCAGAATATGCCATTGAGAAGT 1629
Query 1619 ATCCAAACGATTCGGGAGTTTACGTGTTGTTATCCAATATCCATGCCAAGTCGAGGGAGT 1678
|||||||||| || ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1630 ATCCAAACGACTCAGGAGTTTACGTATTGTTATCCAATATCCACGCCAAGTCAAGGGAGT 1689
Query 1679 GGGAAGGCGTGGCAGAAGTGCGTTCTTTGATGAATAAAAGAGGTGTTAAGAAGGAGCCTG 1738
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1690 GGGAAGGTGTGGCAAAAGTGCGTTCTTTGATGAATAACAGAGGTGTTAAGAAGGAGCCTG 1749
Query 1739 GAGTCAGCTGGATAGGGATACGTAATCAAACCCATGTGTTTCTTGCAGAGGAAAATCAAC 1798
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1750 GAGTAAGCTGGATAGGGATACGTAATCAAACCCATGTGTTTCTTGCAGAGGATAATCAAC 1809
Query 1799 ACCCCGAGATTACGCTGATTTATGCAAAGATTAAGGAAGTTTTGTCAAAGATTAGGCCAT 1858
||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||
Sbjct 1810 ACCCCGAGATTACGCTGATTTATGCAAAGGTTAAGGAAGTTATGTCGAAGATTAAACCAT 1869
Query 1859 TAGGGTATTCGCCTGATGTTGCTGGAGTTTTCCATGATGTCGATGAAGAACAGAGAGAAG 1918
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1870 TAGGGTATTCGCCTGATGTTGCTGGAGCTTTCCATGATGTCGATGAAGAACAGAGAGAAG 1929
Query 1919 ATAACCTCTCTTATCATAGTGAGAAGCTAGCTGTGGCATATGGTCTGATGAAAACGCCAG 1978
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1930 ATAACCTCTCTTATCATAGTGAGAAGCTAGCTGTGGCATATGGTCTGATAAAAACGCCAG 1989
Query 1979 AGAACTCACCATTGTACGTGACTAAAAACGTGAGGATATGTGATGATTGTCACTCTGCAA 2038
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 AGAAATCACCATTGTACGTGACTAAAAACGTGAGGATATGTGATGATTGTCACTCTGCAA 2049
Query 2039 TTAAGCTTATCTCGAAGATCTCAAAACGATACATAGTTATCAGAGATTCCAATCGGTTCC 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 TTAAGCTTATCTCGAAGATCTCAAAACGATACATAGTTATCAGAGATTCCAATCGGTTCC 2109
Query 2099 ATCATTTCCGAGATGGTCAGTGTTCTTGCTGTGATTACTGGTGAA 2143
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2110 ATCATTTCCTAGATGGTCAGTGTTCTTGCTGTGATTACTGGTGAA 2154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115009448595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5