BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494025
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39650.1 | Symbols: | Protein of unknown function (DUF679) ... 1260 0.0
AT1G09157.1 | Symbols: | Protein of unknown function (DUF679) ... 1005 0.0
> AT5G39650.1 | Symbols: | Protein of unknown function (DUF679)
| chr5:15875199-15876116 FORWARD LENGTH=918
Length=918
Score = 1260 bits (682), Expect = 0.0
Identities = 758/795 (95%), Gaps = 4/795 (1%)
Strand=Plus/Plus
Query 1 ACGAAAAAACTGTTTAATCACaaaa-aaaaaaTA-AGAGAGAAACACACAAAAATGGAGA 58
||| |||||||| | |||||||||| |||||| | |||||||||||||| ||||||||||
Sbjct 16 ACG-AAAAACTGGTAAATCACAAAAGAAAAAA-ACAGAGAGAAACACACGAAAATGGAGA 73
Query 59 AAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGGCGACTACGCCGCAAAAACCATCAC 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 74 AAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGGCGACTCCGCCGCAAAAACCATCAC 133
Query 119 CATCACCACCGTCTCGCTCACCAAAACCCGTCTCAATCTCTTCACTGCCTACACTTCCGG 178
|||||||||| ||||| |||||||||||||||| |||||||||| ||||| | || |||
Sbjct 134 CATCACCACCTTCTCGTTCACCAAAACCCGTCTTAATCTCTTCATTGCCTTCCCTCCCGT 193
Query 179 CAGGAGCCGCCGCCGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTAGCGCAAGGAGTTC 238
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 194 CAGGAGCCGCCGCTGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTGGCGCAAGGAGTTC 253
Query 239 AAAAAACAGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACTCTCTTGA 298
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 254 AAAAAACGGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACACTCTTGA 313
Query 299 TGTTCGAAATGGTTCTTCCATCAATCTACCGTGACGGAGACTGTAACGGAATCAACACAC 358
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 314 TGTTCGAAATGGTTCTTCCATCAATATACCGTGACGGAGACTGTAACGGAATCAACACAC 373
Query 359 TCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCATTTCACCG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 374 TCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCATTTTACCG 433
Query 419 ACAGTTTCAAAGCCTCAGATGGGAAAATCTACTACGGTTTCGTGACGCCACGTGGACTCG 478
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 434 ACAGTTTCAAAGCATCCGATGGGAAGATCTACTACGGTTTCGTGACGCCACGTGGACTCG 493
Query 479 CGGTGTTCATGAAACCGCCGCCTCCGGAGTTTGGAGGCGGAGATGTGATAGCGGAAGCGG 538
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |
Sbjct 494 CGGTGTTCATGAAACCGCCGCCTCCAGAGTTTGGTGGCGGAGATGTTATAGCGGAGGCAG 553
Query 539 AGATTCCGGTGACTGATGAGAGGTATAAGTTGAAGGTTAATGACTTTGTTCATGCAGTGA 598
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 554 AGATTCCGGTGACTGATGATAGGTATAAGTTGACGGTTAATGACTTTGTTCATGCAGTGA 613
Query 599 TGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCACTGGATGTTTGT 658
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 614 TGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCACGGGATGTTTGT 673
Query 659 TTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAA 733
Query 719 TTGTTTGCAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATACGGTGTTGGTTGCATGA 778
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 734 TTGTTTGTAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATATGGTGTTGGTTGCATGA 793
Query 779 CTGGTTGATTAATTT 793
|||||| ||| ||||
Sbjct 794 CTGGTTAATTTATTT 808
Score = 119 bits (64), Expect = 5e-26
Identities = 75/80 (94%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 793 TCTATTTCGTATTTTCCTTGTAATTTAGATTATCTGAATTAAACTCCATTGTTCTACTAT 852
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 840 TCTATTTCGTATTTTCCTTGTAATTTAGATTATCTGATTTAAACTCCAATGTTCTACTAT 899
Query 853 TTTCAGT-TATTGTATTGTT 871
||| | | ||||||||||||
Sbjct 900 TTTTA-TCTATTGTATTGTT 918
> AT1G09157.1 | Symbols: | Protein of unknown function (DUF679)
| chr1:2951665-2952396 REVERSE LENGTH=732
Length=732
Score = 1005 bits (544), Expect = 0.0
Identities = 670/730 (92%), Gaps = 11/730 (2%)
Strand=Plus/Plus
Query 52 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGGCGACTACGCCGCAAAAA 111
|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 1 ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGACGACAACGACGCAAAAT 60
Query 112 CCATCACCATCACCACCGTCTCGCTCACCAAAACCCGTCTCAATCTCTTCACTGCCTACA 171
|| |||||| | || ||||||| || || ||||| ||| | |||||||||||||||
Sbjct 61 CCGTCACCA--A-CATCGTCTCGGTCGCCCAAACCTGTCCCTCTCTCTTCACTGCCTATG 117
Query 172 CTTCCGGCAGGAGCCGCCGCCGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTAGCGCAA 231
|||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||| ||
Sbjct 118 CTTCCGGCAGGAGCCGCCGCGGGAGGAGGAAAAGGTAGAAAACGTCGCATGGTGGCGAAA 177
Query 232 GGAGTTCAAAAAACAGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACT 291
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 GGAGTTCAAAAAACGGTTTCGAAGACATCAATGCTCGTCAATTTCCTTCCGACAGGAACT 237
Query 292 CTCTTGATGTTCGAAATGGTTCTTCC-ATCAATCTACCGTGACGGAGACTGTAACGGAAT 350
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 238 CTCTTGATGTTCGAAATGGTTCTTCCGA-CAATCTACCGTGACGGAGACTGTAACGGAAT 296
Query 351 CAACACACTCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCA 410
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAACACACTCATGATTCATCTTCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCA 356
Query 411 TTTCACCGACAGTTTCAAAGCCTCAGATGGGAAAATCTACTACGGTTTCGTGACGCCACG 470
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||
Sbjct 357 TTTCACCGACAGTTTCAAAGCCTCCGATGGGAAAATTTACTACGGTTTTGTGACTCCACG 416
Query 471 TGGACTCGCGGTGTTCATGAAACCGCCGC-CTCCGGAGTTTGGAGGCGGAGATGTGATAG 529
|||||||||||||||||||||||| || | | |||| ||||||||||||||||||||| |
Sbjct 417 TGGACTCGCGGTGTTCATGAAACCACC-CTCGCCGGGGTTTGGAGGCGGAGATGTGATTG 475
Query 530 C-G-GAAGCGGAGATTCCGGTGACTGATGAGAGGTATAAGTTGAAGGTTAATGACTTTGT 587
| | |||| | ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 476 CAGAGAAG-G-AGATTCCGGTGACGGATGAGAGGTATAAGTTGAGGGTTAATGACTTTGT 533
Query 588 TCATGCAGTGATGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCAC 647
||| |||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 534 GCATTCAGTGATGAGTGTTTTGGTTTTTATGGCGATCGCGTTTTCGGATCGGAGAGTCAC 593
Query 648 TGGATGTTTGTTTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAAT 707
|| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 594 AGGGTGTTTGTTTCCAGGAAAAGAGAAGGAGATGGATCAAGTTATGGAGAGTTTTCCGTT 653
Query 708 AATGGTTGGAATTGTTTGCAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATACGGTGT 767
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 654 AATGGTCGGAATTGTTTGCAGTGCTTTGTTTCTTGTTTTTCCGACCAGTCGATACGGTGT 713
Query 768 TGGTTGCATG 777
|| ||||||
Sbjct 714 CGGATGCATG 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5