BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494028
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39610.1 | Symbols: ATNAC2, ORE1, ANAC092, ATNAC6, NAC2, NAC... 1637 0.0
> AT5G39610.1 | Symbols: ATNAC2, ORE1, ANAC092, ATNAC6, NAC2, NAC6
| NAC domain containing protein 6 | chr5:15858400-15859788
REVERSE LENGTH=1187
Length=1187
Score = 1637 bits (886), Expect = 0.0
Identities = 1033/1099 (94%), Gaps = 29/1099 (3%)
Strand=Plus/Plus
Query 61 aaaattcttACAAGAAGATCAAAACTTTTAGAAACCCTATTAGGATAAAATGGATTATGA 120
|||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 93 AAAAATCTTACAAGAAGATC---ATTTTTAGAAACCCTATTAGGATAAAATGGATTACGA 149
Query 121 GGCATCAAGAATCTG-CGAAATGGTTGAAGATGATGAACAAATTGATCTACCACCAGGAT 179
||||||||||||| | ||||||||| |||||||| ||||| || ||||||||||||||||
Sbjct 150 GGCATCAAGAATC-GTCGAAATGGTAGAAGATGAAGAACATATAGATCTACCACCAGGAT 208
Query 180 TCAGATTTCACCCTACTGATGAAGAACTCATAACTCACTACCTCAAACCAAAAGTTTTCA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 209 TCAGATTTCACCCTACTGATGAAGAACTCATAACTCACTACCTCAAACCAAAGGTTTTCA 268
Query 240 ACACTTTCTTCTCTGCTACTGCCATTGGTGAAGTTGATCTCAACAAGATCGAGCCTTGGG 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 269 ACACTTTCTTCTCTGCTACTGCCATTGGTGAAGTTGATCTCAACAAGATTGAGCCTTGGG 328
Query 300 ACTTACCATGGAAGGCTAAGATGGGTGAGAAAGAATGGTATTTCTTTTGTGTAAGAGACC 359
||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||
Sbjct 329 ACTTACCATGGAAGGCTAAGATGGGAGAAAAAGAATGGTATTTCTTCTGTGTGAGAGACC 388
Query 360 GGAAATACCCAACCGGTTTGAGGACAAACCGGGCGACAGAAGCCGGTTATTGGAAAGCCA 419
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 389 GGAAATACCCGACCGGTTTAAGGACAAACCGGGCGACAGAAGCCGGTTATTGGAAAGCCA 448
Query 420 CAGGTAAAGACAAAGAGATTTTCAAGGGAAAATCACTTGTGGGTATGAAGAAAACTTTGG 479
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CAGGAAAAGACAAAGAGATATTCAAGGGAAAATCACTTGTGGGTATGAAGAAAACTTTGG 508
Query 480 TTTTCTATAAAGGAAGAGCTCCTAAAGGAGTTAAAACCAATTGGGTTATGCATGAATATC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TTTTCTATAAAGGAAGAGCTCCTAAAGGAGTTAAAACCAATTGGGTTATGCATGAATATC 568
Query 540 GTTTAGAAGGCAAATATTCTATCGAAAATCTTCCCCAAACAGCTAAGAACGAATGGGTTA 599
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 569 GTTTAGAAGGCAAATATTGTATTGAAAATCTTCCCCAAACAGCTAAGAACGAATGGGTTA 628
Query 600 TATGTCGTGCTTTCCAAAAACGTGCCGATGGTACAAAGGTTCCAATGTCAATGCTTGATC 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 TATGTCGTGTTTTCCAAAAACGTGCCGATGGTACAAAGGTTCCAATGTCAATGCTTGATC 688
Query 660 CACACATTAACCGAATTGAACCAACCGGTTTACCTTCGTTGATGGATTGTTCTCAACGAG 719
|||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 689 CACACATTAACCGAATGGAACCAGCCGGTTTACCTTCGTTAATGGATTGTTCTCAACGAG 748
Query 720 ACTCCTTCACCGGTTCGTCGTCTCACGTGACCTGCTTCTCCGACCAAGAAACCGAAGACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 ACTCCTTCACCGGTTCGTCGTCTCACGTGACCTGCTTCTCCGACCAAGAAACCGAAGACA 808
Query 780 AGAGACTTGTCCAGGAGTCCAAAGGA-GGTTTTGGTTCTCTGTTTTACTCTGATCCTCTG 838
| ||||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 809 AAAGACTTGTCCACGAGTCCAAAG-ACGGTTTTGGTTCTCTGTTTTACTCGGATCCTCTG 867
Query 839 TTTTTACAAGACAATTATTCGCTAATGAAGCTGTTGCTTGACGGTCAAGAACCTCAATT- 897
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 868 TTTTTACAAGACAATTATTCGCTAATGAAGCTGTTGCTTGACGGTCAAGAAACTCAATTC 927
Query 898 TCCCGGTAGATCCTTT-GACGGTCGTGATCCGTCCGGTTTGGCCGGTACAGAAGAATTGG 956
||| || | | ||||| |||||||||||| || | | ||||||||||||||||||
Sbjct 928 TCC-GGCAAA-CCTTTCGACGGTCGTGAT---TC-G-T----CCGGTACAGAAGAATTGG 976
Query 957 ATTGCGTTTGGAATTTCTGAGTTGTATAACTTCTGTTGTAGA-TT-T-GTAGTCATGTGT 1013
||||||||||||||||||||||||||||| || ||||||||| || | ||||||||||||
Sbjct 977 ATTGCGTTTGGAATTTCTGAGTTGTATAAGTTATGTTGTAGACTTGTAGTAGTCATGTGT 1036
Query 1014 TCGTGTGTGTGAATGAATATTCTTGTTACATTTTTT-GTaaaaaaaaaaggagaaaaaaa 1072
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1037 TCGTGTGTGTGAATGAATATTCTTGTTACATTTTTTTGTAAAAAA----GGAGAAAAAAA 1092
Query 1073 TATGCTAGAAAGTCAATTGCTTTTGTTATGTAGCATTAGttttttttATTTTATTTAATA 1132
|||||||||||||||||||||||||||||||||||||||| |||||||| | | | ||||
Sbjct 1093 TATGCTAGAAAGTCAATTGCTTTTGTTATGTAGCATTAGTGTTTTTTATGT-ACTCAATA 1151
Query 1133 GACTTCCAAATTAATTAAA 1151
||||||| |||||| ||||
Sbjct 1152 GACTTCCTAATTAAATAAA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56475613125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5