BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494030
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39590.1 | Symbols: | TLD-domain containing nucleolar prote... 2876 0.0
AT5G39600.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal... 65.8 2e-09
> AT5G39590.1 | Symbols: | TLD-domain containing nucleolar protein
| chr5:15851392-15853990 FORWARD LENGTH=1942
Length=1942
Score = 2876 bits (1557), Expect = 0.0
Identities = 1805/1922 (94%), Gaps = 27/1922 (1%)
Strand=Plus/Plus
Query 1 ATTTCCAATCATGGACTCCAATTTCTCTGATTATTCCCTCTAATTTCGAATTTTTGCATC 60
||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 10 ATTTCTAATCATGGACTCCAATTTCTCTGATCATTCCCTCTAATTTCGGATTTTTGCATC 69
Query 61 TTCTCCGATCATCTTCACCACTATGGGTGCTTCATCTTCAACAGACAACAAAGAATCATC 120
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 70 TTCTCCGATCATCTTCACCACTATGGGTGCTTCATCTTCTACAGACGACAAAGAATCATC 129
Query 121 GGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTCAACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 130 GGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTAAACG 189
Query 181 ATCTTTCTCCAAACT-TTCCGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTCAAGC 239
||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 190 ATCCTTCTCCAAACTCGT-CGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTGAAGC 248
Query 240 AAAGTTTTGGTTTGAGCTACGATTCAATTACTACTGAAGGAG-GTCAAAAAGTTGGAGAC 298
||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||
Sbjct 249 AAAGTTTTGGTTTGAGCTACGATACAATTACTACTGAAGGAGAG-CAAAAAGTTTCAGAC 307
Query 299 TTGTTTCCCAGATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCT 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTGTTTCCCAAATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCT 367
Query 359 GATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGAGGTTATGTCAAATGTTGTGGAAGA 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 368 GATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGTGGTTATGTCAAATGTTGTGGAAGA 427
Query 419 ATGTCGGCTTCGATGTCTTTCAACACTTTGTTGAGAGTTTATTATGTGACAGCTAAAAAT 478
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 428 ATGTCGAATTCGATGTCTTTCAACACTTTGTTGAGAGTTTACTATGTGACAGCTAAAAAT 487
Query 479 GCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAAATTAACGGG 538
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 488 GCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAGATTAACGGG 547
Query 539 TCGATTTCGATTAGAGAATTGCTTGTGTTTCTGTGGATTTGTTGGACAATGTCGTGGGAT 598
||||||||| |||| ||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 548 TCGATTTCGGTTAGTGAATTGCTTGTGTTTCTTTGGATGTGTTGGACAATGTCTTGGGAT 607
Query 599 GGTCGAAGTTCTAAAGCCGCTGAAATG-AAGGGTTGTTTGTTTCTTCCGGATATAAGTCA 657
|||||||| |||||||| ||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 608 GGTCGAAGCTCTAAAGCTGCTGAAATGAAAGGG-TGTTTGTTTCTTCCGGATATTAGTCA 666
Query 658 TTTGATTCTATCAGCAGTTGTGGCTTGCACTGATTCTGAATCTGGAAAGAGTTTGGATGT 717
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 667 TTTGATTCTATCAGCAGTGGTGTCTTGCACTGATTCTGAATCTGGAAATAGTTTGGATGT 726
Query 718 TTGGGAGACTGATGTTTCTGGATTAGAACTCGAACTTCCTATCGGGAAATTCTTAACGTG 777
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 727 TTGGGAGACTGATGTTTCTGGTTTAGAACTTGAACTTCCTATCGGGAAATTCTTAACGTG 786
Query 778 GGCGTTGATGACAGTGCCTAGCCTCACTGAGTGCCTTTCTCACTTTTGTAATTCGAGACT 837
||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 787 GGCTTTGATGACAGTTCCTTGCCTCACTGAGTGCCTTTCTCACTTTTGTAACTCGAGGCT 846
Query 838 TCAAAATTTGACAAGTGTTGAGGATGGTTCTGGACCTTCGAAGTCCACTGCTGTAGATGA 897
||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 847 TCAAAATGTGACAAGTGCAGAGGATGGATCTGGACCTTCAAAGTCCACTGCTGTAGATGA 906
Query 898 TTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCAATTTC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 907 TTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCGATTTC 966
Query 958 TTTGACGAGCAAAAGTATAATAAGCGAGGAGATTTTGAGCTCATGCTTTCCCTGCAATAG 1017
||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct 967 TTTGACGAGCAAAAGTACAATAAGCGAGGAGATTTTGAGCTCATGTTTTCCCGGCAATAG 1026
Query 1018 CAATGAAACC-AATGAACATCTTCTATACCGCTCATACCATCACGGGAAAGGCATGAATC 1076
| || |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1027 CGGTG-AACCAAATGAACATCTTCTATACCGCTCATATTATCACGGGAAAGGCATGAATC 1085
Query 1077 GACTGTGGTCCAACGTTGAAGGGTATCATGCTCCGATACTAGTGATAATTTCTGCAAGCT 1136
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1086 GACTGTGGTCCAACGTTGAAGGGTATCATGCTCCTATACTAGTGATAATTTCTGCAAGTT 1145
Query 1137 GTGAAGTCGAACATGAGGGTACTTCAAGCAAGAGGAAGTGGGTTATTGGTGCAATCTTGC 1196
|| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1146 GTAAAGTCGAACATGAGGCTACTTCAAGCGAGAGGAAGTGGGTCATTGGTGCAATCTTGC 1205
Query 1197 AGCATGGTTTTGAAAACAGGGACGCATTTTATGGAAGCTCTGGGAATTTGTTCTCCATTA 1256
|||| |||||||| ||||| || ||||||||||||||||||||||| ||||||||||| |
Sbjct 1206 AGCAAGGTTTTGAGAACAGAGATGCATTTTATGGAAGCTCTGGGAACTTGTTCTCCATAA 1265
Query 1257 GTCCAGTCTTTCACGCATTCTCATCTTCTGGCAAGGAGAAAAACTTTGCGTATAGCCATC 1316
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1266 GTCCAGTCTTTCACGCATTCTCATCTTCTGGTAAGGAGAAAAACTTTGCGTATAGCCATC 1325
Query 1317 TGCATCCCT-CTGGTGGAGTCTACGACGCACGCCCCAAGCCTGTTGGAATTGGATTCGGG 1375
|||| |||| |||| ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1326 TGCA-CCCTGCTGGCGGAGTGTACGACGCACATCCCAAGCCTGTTGGAATTGGATTCGGG 1384
Query 1376 GGAACACTTGGAAACGAGAGAATTTTCATTGGTGAAGACTTTGCTAAAATCACAGTCCGT 1435
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1385 GGAACACTTGGAAATGAGAGAATTTTCATTGATGAAGACTTTGCTAAAATCACAGTCCGT 1444
Query 1436 CATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTA 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 CATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTA 1504
Query 1496 CCAGTAGAGGCTTTGGTTTTAGATATTGAAGCATGGGGGTTAGGTGGAAATAAGGCTAGG 1555
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1505 CCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAGGTGGAAACAAGGCTAGG 1564
Query 1556 GAAATTCAACAAGCATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATC 1615
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 GAAATTCAACAAAAATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATC 1624
Query 1616 GACTTGAAAACATTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATG 1675
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 GACTTGAAAACGTTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATG 1684
Query 1676 GGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAATGAA-------CGA-A---G-TTT 1723
|||||||||||||||||||||||||||||||||||||||| ||| | | |||
Sbjct 1685 GGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAATGAATGAAAGACGAGAACTGGTTT 1744
Query 1724 GATATATATACACACATACGTTTTTGTCTGT-AAAATATATAAGCAAGAAACTCTTCTGC 1782
|||||||| ||||| ||||||| |||||| | |||||||||| ||||||||||||| |||
Sbjct 1745 GATATATACACACATATACGTTGTTGTCTCTTAAAATATATATGCAAGAAACTCTTTTGC 1804
Query 1783 TATTTATGTA-CTCGTGGATTCAATGTGTAAGTTATGTATACTATTGTTGCCCAAACTCG 1841
| || ||| | ||| ||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 1805 TGTTCATG-AGCTCTTGGATTCAATGTGTAAGTTATGTATACTAGTGTTGCCAAAACTTG 1863
Query 1842 AACCGGCCTGTTGATT--ATATCTGCCCATAAAAATTGGTTTTTATTCCCAGAGCTTCCA 1899
|||| ||| ||||||| |||| |||| |||||||||||||||||||||||||||||| |
Sbjct 1864 AACCAGCCAGTTGATTTGATATTTGCCTATAAAAATTGGTTTTTATTCCCAGAGCTTCAA 1923
Query 1900 TA 1901
||
Sbjct 1924 TA 1925
> AT5G39600.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal
protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast
hits to 50 proteins in 19 species: Archae - 0; Bacteria
- 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr5:15853929-15855192
REVERSE LENGTH=781
Length=781
Score = 65.8 bits (35), Expect = 2e-09
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1858 ATATCTGCCCATAAAAATTGGTTTTTATTCCCAGAGCTTCCATA 1901
|||| |||| |||||||||||||||||||||||||||||| |||
Sbjct 780 ATATTTGCCTATAAAAATTGGTTTTTATTCCCAGAGCTTCAATA 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94126021875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5